Non-Coding RNA Search

Ss1.1-Ova1-OVR010031A08.5

Sequence:


               
               AGATTTGTCTGCTAACAGTAAAAATACTATAATAAATCGGTAACATATGTTGCCAGGCAA
GGAAAAGTGATATAAATAAAGAGACTAGGAGACCCAAACCAAGTACAATGTGAAAAGAAT
TTAACTTTCAATCTCTGCGTTGGTTAATTACCATTTGAAAAGTCATTTGAAAGTGTTACT
CTTATTTGCTTATATTCTTCCTCATTTTTTTTTTTTTTTTCTCTTCAGATTGCATTCTTA
CCCAAATACTCTTCGTGATGGCCTGCTTTGCGGCTTTGGGATTCTTTAGGGAATGGAGAT
CAGTTTCATGGATGACATCCCAGTTTTCTCATCATCAGAAAAGAAAAAAATCCTCTGGCC
AGTGGAAGAAACAGTCACCAAAACGTGAAACAGCCTGGTGAGACAGCAATATTCAACTAC
GAAAAGACCAACAGCATTGGTCATGCCATATTGTACCTGTCTTTCGGTGTTCCTGCTGCC
CACAGGCCTGGAAGCTTCAGACGGACAGGATCTTGCATTTTGGCTACTCCTGCACATGGC
CCAGAGTCTGGTAACCAGAATGAACTTGAGTTGCGGTTAAACAGACATGCGAATCCTGCA
CCCCCACTCCAAGCACTGAGTATATCTTCCAGAACCATAGCCTCTGCCTGGGGGAGGACT
GAGCCTGCCCAGCAAGCTCACCGCAAGCTGGGAGAAGCCCAGACTCTGCAGGCACGTGGT
TCTGCAGAACGAGCCCTGGATGGACTCAGGCAGGCACACCCAGTGATCTCTCCTAGATTC
AACAATCAGGCCAGCAGCTGGTGTGACACTAAATCTTCCCAGAGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGATTTGTCTGCTAACAGTAAAAATACTATAATAAATCGGTAACATATGTTGCCAGGCAA
GGAAAAGTGATATAAATAAAGAGACTAGGAGACCCAAACCAAGTACAATGTGAAAAGAAT
TTAACTTTCAATCTCTGCGTTGGTTAATTACCATTTGAAAAGTCATTTGAAAGTGTTACT
CTTATTTGCTTATATTCTTCCTCATTTTTTTTTTTTTTTTCTCTTCAGATTGCATTCTTA
CCCAAATACTCTTCGTGATGGCCTGCTTTGCGGCTTTGGGATTCTTTAGGGAATGGAGAT
CAGTTTCATGGATGACATCCCAGTTTTCTCATCATCAGAAAAGAAAAAAATCCTCTGGCC
AGTGGAAGAAACAGTCACCAAAACGTGAAACAGCCTGGTGAGACAGCAATATTCAACTAC
GAAAAGACCAACAGCATTGGTCATGCCATATTGTACCTGTCTTTCGGTGTTCCTGCTGCC
CACAGGCCTGGAAGCTTCAGACGGACAGGATCTTGCATTTTGGCTACTCCTGCACATGGC
CCAGAGTCTGGTAACCAGAATGAACTTGAGTTGCGGTTAAACAGACATGCGAATCCTGCA
CCCCCACTCCAAGCACTGAGTATATCTTCCAGAACCATAGCCTCTGCCTGGGGGAGGACT
GAGCCTGCCCAGCAAGCTCACCGCAAGCTGGGAGAAGCCCAGACTCTGCAGGCACGTGGT
TCTGCAGAACGAGCCCTGGATGGACTCAGGCAGGCACACCCAGTGATCTCTCCTAGATTC
AACAATCAGGCCAGCAGCTGGTGTGACACTAAATCTTCCCAGAGAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               1-119, + strand, RNAz p=0.586787
               

               
               654-768, - strand, RNAz p=0.996767

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, + strand, RNAz p=0.586787
               

               
               654-768, - strand, RNAz p=0.996767

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               1-280, gnl|bosTau2|chr11 (46441820-46441540)
               

               
               1-280, gnl|canFam2|chr10 (69139634-69139861)
               

               
               1-280, gnl|echTel1|scaffold_285361 (47606-47825)
               

               
               1-280, gnl|galGal2|chr3 (6581301-6581072)
               

               
               1-280, gnl|hg17|chr2 (66830197-66830424)
               

               
               1-280, gnl|Hg17|chr2 (66830229-66830506)
               

               
               1-280, gnl|loxAfr1|scaffold_17700 (13948-13725)
               

               
               1-280, gnl|mm7|chr11 (18708770-18708552)
               

               
               1-280, gnl|Mm7|chr11 (18708736-18708454)
               

               
               1-280, gnl|monDom2|scaffold_1 (32839630-32839858)
               

               
               1-280, gnl|oryCun1|scaffold_209810 (37617-37840)
               

               
               1-280, gnl|panTro1|chr12 (69071895-69072122)
               

               
               1-280, gnl|rheMac2|chr13 (66971522-66971749)
               

               
               1-280, gnl|rn3|chr14 (99602811-99602605)
               


               
               575-816, gnl|bosTau2|chr11 (46885028-46884793)
               

               
               575-816, gnl|Hg17|chr2 (66852636-66852920)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-280, gnl|bosTau2|chr11 (46441820-46441540)
               

               
               1-280, gnl|canFam2|chr10 (69139634-69139861)
               

               
               1-280, gnl|echTel1|scaffold_285361 (47606-47825)
               

               
               1-280, gnl|galGal2|chr3 (6581301-6581072)
               

               
               1-280, gnl|hg17|chr2 (66830197-66830424)
               

               
               1-280, gnl|Hg17|chr2 (66830229-66830506)
               

               
               1-280, gnl|loxAfr1|scaffold_17700 (13948-13725)
               

               
               1-280, gnl|mm7|chr11 (18708770-18708552)
               

               
               1-280, gnl|Mm7|chr11 (18708736-18708454)
               

               
               1-280, gnl|monDom2|scaffold_1 (32839630-32839858)
               

               
               1-280, gnl|oryCun1|scaffold_209810 (37617-37840)
               

               
               1-280, gnl|panTro1|chr12 (69071895-69072122)
               

               
               1-280, gnl|rheMac2|chr13 (66971522-66971749)
               

               
               1-280, gnl|rn3|chr14 (99602811-99602605)
               


               
               575-816, gnl|bosTau2|chr11 (46885028-46884793)
               

               
               575-816, gnl|Hg17|chr2 (66852636-66852920)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	1-119, + strand, RNAz p=0.586787
	654-768, - strand, RNAz p=0.996767

	1-280, gnl\|bosTau2\|chr11 (46441820-46441540)
	1-280, gnl\|canFam2\|chr10 (69139634-69139861)
	1-280, gnl\|echTel1\|scaffold_285361 (47606-47825)
	1-280, gnl\|galGal2\|chr3 (6581301-6581072)
	1-280, gnl\|hg17\|chr2 (66830197-66830424)
	1-280, gnl\|Hg17\|chr2 (66830229-66830506)
	1-280, gnl\|loxAfr1\|scaffold_17700 (13948-13725)
	1-280, gnl\|mm7\|chr11 (18708770-18708552)
	1-280, gnl\|Mm7\|chr11 (18708736-18708454)
	1-280, gnl\|monDom2\|scaffold_1 (32839630-32839858)
	1-280, gnl\|oryCun1\|scaffold_209810 (37617-37840)
	1-280, gnl\|panTro1\|chr12 (69071895-69072122)
	1-280, gnl\|rheMac2\|chr13 (66971522-66971749)
	1-280, gnl\|rn3\|chr14 (99602811-99602605)

	575-816, gnl\|bosTau2\|chr11 (46885028-46884793)
	575-816, gnl\|Hg17\|chr2 (66852636-66852920)