Ss1.1-Ova1-OVR010031B02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGCCGCCTAGCGTCTCGGTCGCGCCGGTTCCTCAGCCTCAGAGCTGTGAAGGTGACAGC GGGAGGTGACCAGGTTGGCTCCCGCGATGCTGGCGGCACGGCGATTGCTCGGCGGGTCGC TCCCCGCGCGAGTATCTGTGCGTTTCAGCGGCGACACGACAGCGCCCAAGAAAACCTCAT TTGGCTCGCTGAAGGATGAAGACCGGATCTTCACCAACCTGTATGGCCGCCATGACTGGA GACTGAAAGGTGCCCAGAGCCGCGGTGACTGGTACAAGACAAAGGAGATTCTGCTGAAGG GACCTGACTGGATCCTGGGTGAGGTCAAGACGTCGGGCTTGCGGGGCCGTGGAGGCGCTG GCTTCCCCACCGGCCTTAAATGGAGCTTCATGAATAAGCCCTCAGATGGCAGGCCCAAGT ATCTGGTGGTGAACGCTGATGAGGGGGAGCCCGGCACCTGCAAGGACCGGGAGATCATAC GCCACGATCCCCACAAGCTGGTGGAAGGCTGCCTGGTGGGGGGCCGGGCCATGGGCGCCC GCGCCGCCTACATCTACATCCGAGGGGAGTTCTACAACGAGGCCTCCAATCTGCAGGTGG CCATCCGAGAGGCCTATGAGGCTGGTCTGATCGGCAAGAACGCCTGCGGCTCCGGCTACG ATTTTGACGTGTTTGTGGTGCGCGGGGCTGGGGCCTACATCTGCGGGGAGGAGACCGCGC TCATCGAGTCTATCGAGGGCAAGCAGGGCAAGCCCCGCCTGAAGCCGCCCTTCCCCGCAG ACGTGGGAGTGTTTGGCTGCCCTACAACCGTGGCCAACGTGGAGACAGTGGCTGTGTCCC CTACCATCTGCCGCCGTGGGGGCGCGTGGTTTGCCAGCTTTGGCCGAGAGCGCAACTCCG GCACCAAACTGTTCAACATCTCTGGCCACGTCAACCACCCGTGCACTGTGGAGGAGGAGA TGTCTGTGCCACTGAAGGAGCTGATTGAAAAGCATGCGGGAGGTGTCATAGGTGGCTGGG ACAACCTCCTTGCTGTGATCCCTGGTGGCTCATCCACCCCACTGATCCCCAAGTCCGTGT GTGAGACGGTGCTGATGGACTTTGACGCGCTGGTGCAGGCACAGACGGGCCTGGGCACGG CTGCGGTGATTGTCATGGACCGCTCGACGGACATCGTGAAAGCCATCGCCCGCCTCATCG AGTTCTACAAGCATGAGAGCTGTGGCCAGTGCACCCCGTGCCGTGAGGGTGTGGACTGGA TGAACAAGGTGATGGCCCGCTTTGTGAAGGGGGACGCCAGGCCGGCTGAGATCGACTCCT TGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGCGCCCTGGGCGACGGAGCCG CCTGGCCTGTGCAGGGCCTGATCCGACACTTCCGGCCCGAGCTTGAGGAGCGGATGCAGC AGTTTGCCCTGCAGCACCAGGCCAGGCAGGCTGCTTCCTGAGCCTTGGGCTCTCTGGACA ATAAAGCAGGTGCTGCCCAGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGCCGCCTAGCGTCTCGGTCGCGCCGGTTCCTCAGCCTCAGAGCTGTGAAGGTGACAGC GGGAGGTGACCAGGTTGGCTCCCGCGATGCTGGCGGCACGGCGATTGCTCGGCGGGTCGC TCCCCGCGCGAGTATCTGTGCGTTTCAGCGGCGACACGACAGCGCCCAAGAAAACCTCAT TTGGCTCGCTGAAGGATGAAGACCGGATCTTCACCAACCTGTATGGCCGCCATGACTGGA GACTGAAAGGTGCCCAGAGCCGCGGTGACTGGTACAAGACAAAGGAGATTCTGCTGAAGG GACCTGACTGGATCCTGGGTGAGGTCAAGACGTCGGGCTTGCGGGGCCGTGGAGGCGCTG GCTTCCCCACCGGCCTTAAATGGAGCTTCATGAATAAGCCCTCAGATGGCAGGCCCAAGT ATCTGGTGGTGAACGCTGATGAGGGGGAGCCCGGCACCTGCAAGGACCGGGAGATCATAC GCCACGATCCCCACAAGCTGGTGGAAGGCTGCCTGGTGGGGGGCCGGGCCATGGGCGCCC GCGCCGCCTACATCTACATCCGAGGGGAGTTCTACAACGAGGCCTCCAATCTGCAGGTGG CCATCCGAGAGGCCTATGAGGCTGGTCTGATCGGCAAGAACGCCTGCGGCTCCGGCTACG ATTTTGACGTGTTTGTGGTGCGCGGGGCTGGGGCCTACATCTGCGGGGAGGAGACCGCGC TCATCGAGTCTATCGAGGGCAAGCAGGGCAAGCCCCGCCTGAAGCCGCCCTTCCCCGCAG ACGTGGGAGTGTTTGGCTGCCCTACAACCGTGGCCAACGTGGAGACAGTGGCTGTGTCCC CTACCATCTGCCGCCGTGGGGGCGCGTGGTTTGCCAGCTTTGGCCGAGAGCGCAACTCCG GCACCAAACTGTTCAACATCTCTGGCCACGTCAACCACCCGTGCACTGTGGAGGAGGAGA TGTCTGTGCCACTGAAGGAGCTGATTGAAAAGCATGCGGGAGGTGTCATAGGTGGCTGGG ACAACCTCCTTGCTGTGATCCCTGGTGGCTCATCCACCCCACTGATCCCCAAGTCCGTGT GTGAGACGGTGCTGATGGACTTTGACGCGCTGGTGCAGGCACAGACGGGCCTGGGCACGG CTGCGGTGATTGTCATGGACCGCTCGACGGACATCGTGAAAGCCATCGCCCGCCTCATCG AGTTCTACAAGCATGAGAGCTGTGGCCAGTGCACCCCGTGCCGTGAGGGTGTGGACTGGA TGAACAAGGTGATGGCCCGCTTTGTGAAGGGGGACGCCAGGCCGGCTGAGATCGACTCCT TGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGCGCCCTGGGCGACGGAGCCG CCTGGCCTGTGCAGGGCCTGATCCGACACTTCCGGCCCGAGCTTGAGGAGCGGATGCAGC AGTTTGCCCTGCAGCACCAGGCCAGGCAGGCTGCTTCCTGAGCCTTGGGCTCTCTGGACA ATAAAGCAGGTGCTGCCCAGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 486-603, + strand, RNAz p=0.611074 | |
| 786-904, + strand, RNAz p=0.682664 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 486-603, + strand, RNAz p=0.611074 | |
| 786-904, + strand, RNAz p=0.682664 |
| Aligned organism(s): 46 entry(ies) | More info |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
| 1-158, gnl|bosTau2|chr29 (39600687-39600516) | |
| 1-158, gnl|canFam2|chr18 (52914630-52914245) | |
| 1-158, gnl|dasNov1|scaffold_15183 (12863-12505) | |
| 1-158, gnl|echTel1|scaffold_236997 (4053-3686) | |
| 1-158, gnl|hg17|chr11 (67130786-67131164) | |
| 1-158, gnl|Hg17|chr11 (67130965-67131123) | |
| 1-158, gnl|mm7|chr19 (3907692-3907319) | |
| 1-158, gnl|Mm7|chr19 (3907519-3907357) | |
| 1-158, gnl|monDom2|scaffold_226 (635979-635670) | |
| 1-158, gnl|panTro1|chr9 (68392152-68392530) | |
| 1-158, gnl|rheMac2|chr14 (6844100-6843722) | |
| 1-158, gnl|rn3|chr1 (206748777-206748401) | |
| 410-603, gnl|bosTau2|chr29 (39598110-39597917) | |
| 410-603, gnl|canFam2|chr18 (52911976-52911765) | |
| 410-603, gnl|danRer3|chr19 (13722411-13722202) | |
| 410-603, gnl|dasNov1|scaffold_15183 (10420-10213) | |
| 410-603, gnl|echTel1|scaffold_310868 (411-619) | |
| 410-603, gnl|fr1|chrUn (145979225-145979422) | |
| 410-603, gnl|galGal2|chrUn (108733199-108733393) | |
| 410-603, gnl|hg17|chr11 (67133483-67133692) | |
| 410-603, gnl|Hg17|chr11 (67133496-67133689) | |
| 410-603, gnl|mm7|chr19 (3904833-3904626) | |
| 410-603, gnl|Mm7|chr19 (3904818-3904626) | |
| 410-603, gnl|monDom2|scaffold_226 (634272-634068) | |
| 410-603, gnl|panTro1|chr9 (68394853-68395062) | |
| 410-603, gnl|rn3|chr1 (206745969-206745762) | |
| 410-603, gnl|tetNig1|chr5 (742697-742516) | |
| 410-603, gnl|xenTro1|scaffold_1511 (87586-87779) | |
| 786-1000, gnl|bosTau2|chr29 (39596225-39596011) | |
| 786-1000, gnl|Hg17|chr11 (67135041-67135255) | |
| 786-1000, gnl|Mm7|chr19 (3903613-3903399) | |
| 1248-1395, gnl|bosTau2|chr29 (39595082-39594935) | |
| 1248-1395, gnl|canFam2|chr18 (52909298-52909113) | |
| 1248-1395, gnl|danRer3|chr19 (13714451-13714293) | |
| 1248-1395, gnl|dasNov1|scaffold_15183 (7657-7474) | |
| 1248-1395, gnl|echTel1|scaffold_310868 (2791-2970) | |
| 1248-1395, gnl|fr1|chrUn (145981037-145981211) | |
| 1248-1395, gnl|hg17|chr11 (67136138-67136323) | |
| 1248-1395, gnl|Hg17|chr11 (67136166-67136313) | |
| 1248-1395, gnl|mm7|chr19 (3902750-3902567) | |
| 1248-1395, gnl|Mm7|chr19 (3902722-3902575) | |
| 1248-1395, gnl|oryCun1|scaffold_205939 (2679-2834) | |
| 1248-1395, gnl|panTro1|chr9 (68397511-68397696) | |
| 1248-1395, gnl|rheMac2|chr14 (6838147-6837962) | |
| 1248-1395, gnl|rn3|chr1 (206743895-206743712) | |
| 1248-1395, gnl|xenTro1|scaffold_1511 (114030-114201) |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-158, gnl|bosTau2|chr29 (39600687-39600516) | |
| 1-158, gnl|canFam2|chr18 (52914630-52914245) | |
| 1-158, gnl|dasNov1|scaffold_15183 (12863-12505) | |
| 1-158, gnl|echTel1|scaffold_236997 (4053-3686) | |
| 1-158, gnl|hg17|chr11 (67130786-67131164) | |
| 1-158, gnl|Hg17|chr11 (67130965-67131123) | |
| 1-158, gnl|mm7|chr19 (3907692-3907319) | |
| 1-158, gnl|Mm7|chr19 (3907519-3907357) | |
| 1-158, gnl|monDom2|scaffold_226 (635979-635670) | |
| 1-158, gnl|panTro1|chr9 (68392152-68392530) | |
| 1-158, gnl|rheMac2|chr14 (6844100-6843722) | |
| 1-158, gnl|rn3|chr1 (206748777-206748401) | |
| 410-603, gnl|bosTau2|chr29 (39598110-39597917) | |
| 410-603, gnl|canFam2|chr18 (52911976-52911765) | |
| 410-603, gnl|danRer3|chr19 (13722411-13722202) | |
| 410-603, gnl|dasNov1|scaffold_15183 (10420-10213) | |
| 410-603, gnl|echTel1|scaffold_310868 (411-619) | |
| 410-603, gnl|fr1|chrUn (145979225-145979422) | |
| 410-603, gnl|galGal2|chrUn (108733199-108733393) | |
| 410-603, gnl|hg17|chr11 (67133483-67133692) | |
| 410-603, gnl|Hg17|chr11 (67133496-67133689) | |
| 410-603, gnl|mm7|chr19 (3904833-3904626) | |
| 410-603, gnl|Mm7|chr19 (3904818-3904626) | |
| 410-603, gnl|monDom2|scaffold_226 (634272-634068) | |
| 410-603, gnl|panTro1|chr9 (68394853-68395062) | |
| 410-603, gnl|rn3|chr1 (206745969-206745762) | |
| 410-603, gnl|tetNig1|chr5 (742697-742516) | |
| 410-603, gnl|xenTro1|scaffold_1511 (87586-87779) | |
| 786-1000, gnl|bosTau2|chr29 (39596225-39596011) | |
| 786-1000, gnl|Hg17|chr11 (67135041-67135255) | |
| 786-1000, gnl|Mm7|chr19 (3903613-3903399) | |
| 1248-1395, gnl|bosTau2|chr29 (39595082-39594935) | |
| 1248-1395, gnl|canFam2|chr18 (52909298-52909113) | |
| 1248-1395, gnl|danRer3|chr19 (13714451-13714293) | |
| 1248-1395, gnl|dasNov1|scaffold_15183 (7657-7474) | |
| 1248-1395, gnl|echTel1|scaffold_310868 (2791-2970) | |
| 1248-1395, gnl|fr1|chrUn (145981037-145981211) | |
| 1248-1395, gnl|hg17|chr11 (67136138-67136323) | |
| 1248-1395, gnl|Hg17|chr11 (67136166-67136313) | |
| 1248-1395, gnl|mm7|chr19 (3902750-3902567) | |
| 1248-1395, gnl|Mm7|chr19 (3902722-3902575) | |
| 1248-1395, gnl|oryCun1|scaffold_205939 (2679-2834) | |
| 1248-1395, gnl|panTro1|chr9 (68397511-68397696) | |
| 1248-1395, gnl|rheMac2|chr14 (6838147-6837962) | |
| 1248-1395, gnl|rn3|chr1 (206743895-206743712) | |
| 1248-1395, gnl|xenTro1|scaffold_1511 (114030-114201) |
| Expressed library(ies): 32 entry(ies) | More info |
| Expressed library(ies): 32 entry(ies) | Help | Less info |
| hlv (0.835538) | |
| cov (0.792917) | |
| nms (0.641574) | |
| col (0.585023) | |
| nep (0.551775) | |
| cly (0.361925) | |
| ebs (0.354904) | |
| eye (0.341006) | |
| fhi (0.339155) | |
| eru (0.240096) | |
| ece (0.229305) | |
| nbm (0.198649) | |
| jej (0.197844) | |
| ldo (0.194005) | |
| nlu (0.191681) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| nco (0.161734) | |
| csp (0.161186) | |
| eli (0.151814) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| ese (0.126502) | |
| pgl (0.118483) | |
| spc (0.113366) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 32 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hlv (0.835538) | |
| cov (0.792917) | |
| nms (0.641574) | |
| col (0.585023) | |
| nep (0.551775) | |
| cly (0.361925) | |
| ebs (0.354904) | |
| eye (0.341006) | |
| fhi (0.339155) | |
| eru (0.240096) | |
| ece (0.229305) | |
| nbm (0.198649) | |
| jej (0.197844) | |
| ldo (0.194005) | |
| nlu (0.191681) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| nco (0.161734) | |
| csp (0.161186) | |
| eli (0.151814) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| ese (0.126502) | |
| pgl (0.118483) | |
| spc (0.113366) | |
| cty (0.10408) | |
| eje (0.0988338) |