Non-Coding RNA Search

Ss1.1-Ova1-OVR010031C09.5

Sequence:


               
               CCGCCCAGCGGCCAATCCCGGCTGCGCTCCGGCCTGTTCTCTGCGCGGTGGTGGCGCCGA
GCGCGGAGGCTGCCCGGCGAGCTCAAGCTTTGTGCTCAGCTGCAGCTTCTGCGGAAGGCG
CCCAAGATGGATGCAGAGCCCCAGAGGAGGTTTGGCGTGGTGGTGGTGGGCGTGGGCCGA
GCCGGCTCCGTGCGGATCCGGGACCTGCGGAGTCCCAACGCTTCCTCCGAGTTCCTGAAC
CTGATTGGCTTCGTGTCCAGACGAGAGCTGGGGAGCATTGAGGAGGTGAAGCAGATTTCT
TTGGAAGATGCTCTTTCCAGTCAAGAGGTCGAGGTTGCTTTTATCTGCAGTGAGAGCTCC
AGCCACGAGGACTACATCAGGCAGTTCCTTAACGCTGGGAAGCATGTCCTTGTGGAATAC
CCCATGACACTGTCTTGGGCAGCAGCGAAGGACCTGTGGGAGCTGGCGGAGCAGAAAGGG
AAAGTCCTGCATGAGGAGCACGTTGAACTCTTGATGGAGGAGTTTGCGTTCCTGAAAAAA
GAAGTGGTGGGGAAGGACCTGCTGAAAGGGTCTCTCCTCTTCACAGCTGGCCCTTTGGAA
GAGGGGCGGTTTGGCTTCCCCGCCTTCAGCGGCATCTCTCGCCTGACCTGGCTGGTCTCC
CTCTTTGGGGAGCTGTCCCTTGTGTCTGCGACTCTGGAAGAGCGGAAGGAGGATCAGTAC
ATGAAGATGACGGTGTGTCTGGAGACAGAGAACAAAAGCCCGCTGACCTGGATTGAGGAG
AAGGCACCTGGCCTCAAGCGAAACAGACATTTAAGCTTCCATTTCAAGTCTGGGTCCCTG
GAGAATATGCCAAATGTAGGCATCAATAAGAATATTTTCCTGAAGGATCAAAAGATATTT
GTCCAGAAACTCTTGGGCCAGGTCTCTGAAAAGGAGCTGGCCGCCGAGAAGAAACGTATC
TTGCACTGCCTGTGGCTGGCGGGAGAGATCCAGAAGCACTGCTGCTCGAAGAAGTAAGGG
GAGGGGGCATCGCGGCTGTGCCCAGGCAGACGGAGCCTGGTTTCCGTGGAGAATTGCGCT
TCCTTTCTGGTCTTACCATTAAACGTGTCTTGGGGGAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGCCCAGCGGCCAATCCCGGCTGCGCTCCGGCCTGTTCTCTGCGCGGTGGTGGCGCCGA
GCGCGGAGGCTGCCCGGCGAGCTCAAGCTTTGTGCTCAGCTGCAGCTTCTGCGGAAGGCG
CCCAAGATGGATGCAGAGCCCCAGAGGAGGTTTGGCGTGGTGGTGGTGGGCGTGGGCCGA
GCCGGCTCCGTGCGGATCCGGGACCTGCGGAGTCCCAACGCTTCCTCCGAGTTCCTGAAC
CTGATTGGCTTCGTGTCCAGACGAGAGCTGGGGAGCATTGAGGAGGTGAAGCAGATTTCT
TTGGAAGATGCTCTTTCCAGTCAAGAGGTCGAGGTTGCTTTTATCTGCAGTGAGAGCTCC
AGCCACGAGGACTACATCAGGCAGTTCCTTAACGCTGGGAAGCATGTCCTTGTGGAATAC
CCCATGACACTGTCTTGGGCAGCAGCGAAGGACCTGTGGGAGCTGGCGGAGCAGAAAGGG
AAAGTCCTGCATGAGGAGCACGTTGAACTCTTGATGGAGGAGTTTGCGTTCCTGAAAAAA
GAAGTGGTGGGGAAGGACCTGCTGAAAGGGTCTCTCCTCTTCACAGCTGGCCCTTTGGAA
GAGGGGCGGTTTGGCTTCCCCGCCTTCAGCGGCATCTCTCGCCTGACCTGGCTGGTCTCC
CTCTTTGGGGAGCTGTCCCTTGTGTCTGCGACTCTGGAAGAGCGGAAGGAGGATCAGTAC
ATGAAGATGACGGTGTGTCTGGAGACAGAGAACAAAAGCCCGCTGACCTGGATTGAGGAG
AAGGCACCTGGCCTCAAGCGAAACAGACATTTAAGCTTCCATTTCAAGTCTGGGTCCCTG
GAGAATATGCCAAATGTAGGCATCAATAAGAATATTTTCCTGAAGGATCAAAAGATATTT
GTCCAGAAACTCTTGGGCCAGGTCTCTGAAAAGGAGCTGGCCGCCGAGAAGAAACGTATC
TTGCACTGCCTGTGGCTGGCGGGAGAGATCCAGAAGCACTGCTGCTCGAAGAAGTAAGGG
GAGGGGGCATCGCGGCTGTGCCCAGGCAGACGGAGCCTGGTTTCCGTGGAGAATTGCGCT
TCCTTTCTGGTCTTACCATTAAACGTGTCTTGGGGGAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55628458|ref|XP_519058.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55628458|ref|XP_519058.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               474-586, + strand, RNAz p=0.996782
               

               
               796-1035, + strand, RNAz p=0.999219

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               474-586, + strand, RNAz p=0.996782
               

               
               796-1035, + strand, RNAz p=0.999219

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               258-381, gnl|bosTau2|chr4 (38967697-38967820)
               

               
               258-381, gnl|Hg17|chr7 (43604085-43604208)
               

               
               258-381, gnl|Mm7|chr2 (126826813-126826936)
               


               
               474-586, gnl|bosTau2|chr4 (38976741-38976853)
               

               
               474-586, gnl|Hg17|chr7 (43613299-43613411)
               

               
               474-586, gnl|Mm7|chr2 (126832887-126832999)
               


               
               757-1114, gnl|bosTau2|chr4 (38983583-38983941)
               

               
               757-1114, gnl|Hg17|chr7 (43619814-43620171)
               

               
               757-1114, gnl|Mm7|chr2 (126837586-126837928)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               258-381, gnl|bosTau2|chr4 (38967697-38967820)
               

               
               258-381, gnl|Hg17|chr7 (43604085-43604208)
               

               
               258-381, gnl|Mm7|chr2 (126826813-126826936)
               


               
               474-586, gnl|bosTau2|chr4 (38976741-38976853)
               

               
               474-586, gnl|Hg17|chr7 (43613299-43613411)
               

               
               474-586, gnl|Mm7|chr2 (126832887-126832999)
               


               
               757-1114, gnl|bosTau2|chr4 (38983583-38983941)
               

               
               757-1114, gnl|Hg17|chr7 (43619814-43620171)
               

               
               757-1114, gnl|Mm7|chr2 (126837586-126837928)

Expressed library(ies): 19 entry(ies)

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Expressed library(ies): 19 entry(ies)

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               fhi (0.508733)
               

               
               nbm (0.397298)
               

               
               cki (0.330469)
               

               
               cga (0.279096)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               cje (0.165235)
               

               
               eli (0.151814)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.508733)
               

               
               nbm (0.397298)
               

               
               cki (0.330469)
               

               
               cga (0.279096)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               cje (0.165235)
               

               
               eli (0.151814)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	474-586, + strand, RNAz p=0.996782
	796-1035, + strand, RNAz p=0.999219

	258-381, gnl\|bosTau2\|chr4 (38967697-38967820)
	258-381, gnl\|Hg17\|chr7 (43604085-43604208)
	258-381, gnl\|Mm7\|chr2 (126826813-126826936)

	474-586, gnl\|bosTau2\|chr4 (38976741-38976853)
	474-586, gnl\|Hg17\|chr7 (43613299-43613411)
	474-586, gnl\|Mm7\|chr2 (126832887-126832999)

	757-1114, gnl\|bosTau2\|chr4 (38983583-38983941)
	757-1114, gnl\|Hg17\|chr7 (43619814-43620171)
	757-1114, gnl\|Mm7\|chr2 (126837586-126837928)

	fhi (0.508733)
	nbm (0.397298)
	cki (0.330469)
	cga (0.279096)
	hea (0.204499)
	col (0.195008)
	nlu (0.191681)
	cje (0.165235)
	eli (0.151814)
	hlv (0.139256)
	ssp (0.13552)
	pla (0.133672)
	eru (0.120048)
	ebs (0.118301)
	ecc (0.115035)
	jca (0.11396)
	spc (0.113366)
	cty (0.10408)
	eje (0.0988338)