Non-Coding RNA Search

Ss1.1-Ova1-OVR010031D02.5

Sequence:


               
               CCCTCCTTCTCTCAGGATGGGGCTGTGCTGCCTCAGTGGCTCTGCTCCAACTGTCAGGTT
GCCTACGACTCGTCAGTCATCGAGATGGCCCTGGTGGAGGCCCTGCAGAAGAAGCTGATG
GCCTTCACCCTGCAGGACCTGGTCTGTGTGAAGTGCCGGGGAGTGAAGGAGACCAACATG
GCTGTGTATTGCAGCTGTGCTGGGGGCTTCGCGCTTACCATCCACACTAAGGTATTCATG
GAGCAGATTGGAATCTTCCAGAACATTGCCCAGCACTATGGCATGTCGTACCTCACGGAG
ACCCTAGAGTGGCTGCTGCAGCAGAACCCCCAGCTGGGTCATTAGCATGCTGGGCAGTGC
CCGTTCTCTGCACCTAAGAAAACCATCCTCAGGAGGCTTTCGGGGAGTAAGACACACGTC
CCAGAAGAGGCAGGAACCAGCCAGAGCAGGAAGTGGCTCCACCTACAGGTTCCAGGGCCC
CAGCCTCGGTCCAGGGCAGCCCTCTCCAGGCCCAACAAGCGTGTCCATAAGGGCTCCCAG
GGCATGTTTCTTGCTGGTGGAACACTATTGCGGCTGCTGCTGCAGGGCCCCTGGCAGCCC
CAGTCCTTCTACCCTCCCCTCTGCTGCCCTGCGGTCCCCATGGAGGTCTTCTGTTTGAGC
TGAGATCCTAAAGTGGCAGAACCAGGCAGACCCAGACATTTCCTGTACACTAAGATCTGG
GGCTTGGGCTTCTCTGTCTGTGGAGACTAACGGTCAGAATGGGGTTTACAGAGGTGTTCC
TGTTTTGGCACAATCACCTTGTCTGCAGTGATGGGACTGGGCCGGTGGCAGAACAGCTGA
GGGAAGGAGGGTCTTGGCCTGGGGCTGGGCCACAGTGGGGCCTGGGAGGGGGCAACCACA
GCAGGAGGCCTGGGAGCACAGGGGAGGGGTGAGGCGCACCGTTATCCCGGATTTTGACAT
CATCTGCTAGCACCTGGACTCGAGAATGTATTTCTTCACATGCAAGACTATGTTTTTTCC
TGTAGTCACAGGCGGCTCTGTTCTTGCTTCTCAGCCTCAGGGATCAGTCCAAGACCTCTG
ACCCCCCAGGGCCTGCCAGGTATCCGACTGTCCAGAGGCAGAGGGTCCTTAGGCTGTGCC
ACCTTTAAAATGGAACACTTAGCACTGGTTTGCTCGGGGCTGGGGCTGCCCTGCTTTCCC
TTCCCGGTCAGGCTGGGCAAGAGCAGTGGGCTGGGCTAGGAGGCTGCCTTCCCACCGTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCTCCTTCTCTCAGGATGGGGCTGTGCTGCCTCAGTGGCTCTGCTCCAACTGTCAGGTT
GCCTACGACTCGTCAGTCATCGAGATGGCCCTGGTGGAGGCCCTGCAGAAGAAGCTGATG
GCCTTCACCCTGCAGGACCTGGTCTGTGTGAAGTGCCGGGGAGTGAAGGAGACCAACATG
GCTGTGTATTGCAGCTGTGCTGGGGGCTTCGCGCTTACCATCCACACTAAGGTATTCATG
GAGCAGATTGGAATCTTCCAGAACATTGCCCAGCACTATGGCATGTCGTACCTCACGGAG
ACCCTAGAGTGGCTGCTGCAGCAGAACCCCCAGCTGGGTCATTAGCATGCTGGGCAGTGC
CCGTTCTCTGCACCTAAGAAAACCATCCTCAGGAGGCTTTCGGGGAGTAAGACACACGTC
CCAGAAGAGGCAGGAACCAGCCAGAGCAGGAAGTGGCTCCACCTACAGGTTCCAGGGCCC
CAGCCTCGGTCCAGGGCAGCCCTCTCCAGGCCCAACAAGCGTGTCCATAAGGGCTCCCAG
GGCATGTTTCTTGCTGGTGGAACACTATTGCGGCTGCTGCTGCAGGGCCCCTGGCAGCCC
CAGTCCTTCTACCCTCCCCTCTGCTGCCCTGCGGTCCCCATGGAGGTCTTCTGTTTGAGC
TGAGATCCTAAAGTGGCAGAACCAGGCAGACCCAGACATTTCCTGTACACTAAGATCTGG
GGCTTGGGCTTCTCTGTCTGTGGAGACTAACGGTCAGAATGGGGTTTACAGAGGTGTTCC
TGTTTTGGCACAATCACCTTGTCTGCAGTGATGGGACTGGGCCGGTGGCAGAACAGCTGA
GGGAAGGAGGGTCTTGGCCTGGGGCTGGGCCACAGTGGGGCCTGGGAGGGGGCAACCACA
GCAGGAGGCCTGGGAGCACAGGGGAGGGGTGAGGCGCACCGTTATCCCGGATTTTGACAT
CATCTGCTAGCACCTGGACTCGAGAATGTATTTCTTCACATGCAAGACTATGTTTTTTCC
TGTAGTCACAGGCGGCTCTGTTCTTGCTTCTCAGCCTCAGGGATCAGTCCAAGACCTCTG
ACCCCCCAGGGCCTGCCAGGTATCCGACTGTCCAGAGGCAGAGGGTCCTTAGGCTGTGCC
ACCTTTAAAATGGAACACTTAGCACTGGTTTGCTCGGGGCTGGGGCTGCCCTGCTTTCCC
TTCCCGGTCAGGCTGGGCAAGAGCAGTGGGCTGGGCTAGGAGGCTGCCTTCCCACCGTCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61843349|ref|XP_589907.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61843349|ref|XP_589907.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               375-607, - strand, RNAz p=0.985694

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               375-607, - strand, RNAz p=0.985694

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               13-143, gnl|bosTau2|chr17 (23051185-23051055)
               

               
               13-143, gnl|canFam2|chr26 (3480563-3480430)
               

               
               13-143, gnl|danRer3|chrNA (72978133-72978000)
               

               
               13-143, gnl|echTel1|scaffold_138469 (814-701)
               

               
               13-143, gnl|fr1|chrUn (1633174-1633307)
               

               
               13-143, gnl|galGal2|chr15 (9908277-9908409)
               

               
               13-143, gnl|hg17|chr12 (131812576-131812709)
               

               
               13-143, gnl|Hg17|chr12 (131812709-131812579)
               

               
               13-143, gnl|mm7|chr5 (109503028-109502896)
               

               
               13-143, gnl|Mm7|chr5 (109502894-109503024)
               

               
               13-143, gnl|monDom2|scaffold_54 (1251460-1251592)
               

               
               13-143, gnl|oryCun1|scaffold_189106 (91919-91787)
               

               
               13-143, gnl|panTro1|chr10 (134667005-134667138)
               

               
               13-143, gnl|rheMac2|chr11 (133937536-133937669)
               

               
               13-143, gnl|rn3|chr12 (46359472-46359604)
               

               
               13-143, gnl|tetNig1|chr12 (6227829-6227961)
               

               
               13-143, gnl|xenTro1|scaffold_207 (1114912-1114780)
               


               
               230-695, gnl|bosTau2|chr17 (23050171-23049691)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-143, gnl|bosTau2|chr17 (23051185-23051055)
               

               
               13-143, gnl|canFam2|chr26 (3480563-3480430)
               

               
               13-143, gnl|danRer3|chrNA (72978133-72978000)
               

               
               13-143, gnl|echTel1|scaffold_138469 (814-701)
               

               
               13-143, gnl|fr1|chrUn (1633174-1633307)
               

               
               13-143, gnl|galGal2|chr15 (9908277-9908409)
               

               
               13-143, gnl|hg17|chr12 (131812576-131812709)
               

               
               13-143, gnl|Hg17|chr12 (131812709-131812579)
               

               
               13-143, gnl|mm7|chr5 (109503028-109502896)
               

               
               13-143, gnl|Mm7|chr5 (109502894-109503024)
               

               
               13-143, gnl|monDom2|scaffold_54 (1251460-1251592)
               

               
               13-143, gnl|oryCun1|scaffold_189106 (91919-91787)
               

               
               13-143, gnl|panTro1|chr10 (134667005-134667138)
               

               
               13-143, gnl|rheMac2|chr11 (133937536-133937669)
               

               
               13-143, gnl|rn3|chr12 (46359472-46359604)
               

               
               13-143, gnl|tetNig1|chr12 (6227829-6227961)
               

               
               13-143, gnl|xenTro1|scaffold_207 (1114912-1114780)
               


               
               230-695, gnl|bosTau2|chr17 (23050171-23049691)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fty (0.17584)
               

               
               ctl (0.153069)
               

               
               eep (0.122564)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               ctl (0.153069)
               

               
               eep (0.122564)

	13-143, gnl\|bosTau2\|chr17 (23051185-23051055)
	13-143, gnl\|canFam2\|chr26 (3480563-3480430)
	13-143, gnl\|danRer3\|chrNA (72978133-72978000)
	13-143, gnl\|echTel1\|scaffold_138469 (814-701)
	13-143, gnl\|fr1\|chrUn (1633174-1633307)
	13-143, gnl\|galGal2\|chr15 (9908277-9908409)
	13-143, gnl\|hg17\|chr12 (131812576-131812709)
	13-143, gnl\|Hg17\|chr12 (131812709-131812579)
	13-143, gnl\|mm7\|chr5 (109503028-109502896)
	13-143, gnl\|Mm7\|chr5 (109502894-109503024)
	13-143, gnl\|monDom2\|scaffold_54 (1251460-1251592)
	13-143, gnl\|oryCun1\|scaffold_189106 (91919-91787)
	13-143, gnl\|panTro1\|chr10 (134667005-134667138)
	13-143, gnl\|rheMac2\|chr11 (133937536-133937669)
	13-143, gnl\|rn3\|chr12 (46359472-46359604)
	13-143, gnl\|tetNig1\|chr12 (6227829-6227961)
	13-143, gnl\|xenTro1\|scaffold_207 (1114912-1114780)

	230-695, gnl\|bosTau2\|chr17 (23050171-23049691)