Non-Coding RNA Search

Ss1.1-Ova1-OVR010031D12.5

Sequence:


               
               GGGAGGGGTGCGCAGAGAGAGGCGGGGCGGGAAGGCAAGAGGTGTCCCCTCCACCCGAAC
GGCGGGAGACCCGAGCAAGCTCTGTGACAGCTCGTCGGCCGCCATGTCAGCGAGCGGGGC
TGGAAACAGACCCGGCGCCCGGTGGTAGCCCTCCTTTCGTCTCCCGTTCCCAGACATTGA
AGGACTTTGATGAAACTTAAATGATTCAACAAAAGATGCTCTAATGGATGACAGAGAAAC
TCCTACATATAATCTGCAGAGAGAACCACAAGATGGATGCCATCCTGGTGACGGTGTGGA
AAGTCTAGTAACGTGCTTGCCCTCTGCATCAGATGAAAATGAAAACCAACTTGATGGGGA
TGGGTGTGAGCGTCTGACCAGCAGTGACGGTGCAATGGGCAAAGCTGGAGTGTTTGAGCA
GGACACTCTCAACAATAATGAAAGCTGCTCACCAAGTTGTGAGGTGGCTGCAAGCGAGAA
CTCAGAAAACCCTTCTTGTGAAGTCCCCAAAGATGGACAGGCCTTTTTGGGAAAGGACAA
AGAAATACCTGGAAAAAGAAGTTTAAAAAGCAAAAGAGGCACTGTTAAGAAGATACCACA
AGGTATTTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAGGGGTGCGCAGAGAGAGGCGGGGCGGGAAGGCAAGAGGTGTCCCCTCCACCCGAAC
GGCGGGAGACCCGAGCAAGCTCTGTGACAGCTCGTCGGCCGCCATGTCAGCGAGCGGGGC
TGGAAACAGACCCGGCGCCCGGTGGTAGCCCTCCTTTCGTCTCCCGTTCCCAGACATTGA
AGGACTTTGATGAAACTTAAATGATTCAACAAAAGATGCTCTAATGGATGACAGAGAAAC
TCCTACATATAATCTGCAGAGAGAACCACAAGATGGATGCCATCCTGGTGACGGTGTGGA
AAGTCTAGTAACGTGCTTGCCCTCTGCATCAGATGAAAATGAAAACCAACTTGATGGGGA
TGGGTGTGAGCGTCTGACCAGCAGTGACGGTGCAATGGGCAAAGCTGGAGTGTTTGAGCA
GGACACTCTCAACAATAATGAAAGCTGCTCACCAAGTTGTGAGGTGGCTGCAAGCGAGAA
CTCAGAAAACCCTTCTTGTGAAGTCCCCAAAGATGGACAGGCCTTTTTGGGAAAGGACAA
AGAAATACCTGGAAAAAGAAGTTTAAAAAGCAAAAGAGGCACTGTTAAGAAGATACCACA
AGGTATTTTTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61857060|ref|XP_614690.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61857060|ref|XP_614690.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               172-288, - strand, RNAz p=0.665
               

               
               489-612, - strand, RNAz p=0.809649

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               172-288, - strand, RNAz p=0.665
               

               
               489-612, - strand, RNAz p=0.809649

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               172-612, gnl|bosTau2|chr16 (19487139-19487579)
               

               
               172-612, gnl|canFam2|chr7 (40298977-40299474)
               

               
               172-612, gnl|dasNov1|scaffold_20290 (1333-815)
               

               
               172-612, gnl|echTel1|scaffold_278877 (42259-41747)
               

               
               172-612, gnl|galGal2|chr3 (30204800-30204288)
               

               
               172-612, gnl|hg17|chr1 (243080831-243081338)
               

               
               172-612, gnl|Hg17|chr1 (243080853-243081292)
               

               
               172-612, gnl|loxAfr1|scaffold_1871 (18839-19344)
               

               
               172-612, gnl|mm7|chr1 (179559385-179559891)
               

               
               172-612, gnl|Mm7|chr1 (179559411-179559853)
               

               
               172-612, gnl|monDom2|scaffold_13 (36456956-36456452)
               

               
               172-612, gnl|oryCun1|scaffold_155746 (5305-4798)
               

               
               172-612, gnl|panTro1|chr1_random (54327554-54328061)
               

               
               172-612, gnl|rheMac2|chr1 (210425661-210425154)
               

               
               172-612, gnl|rn3|chr13 (95466347-95466844)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               172-612, gnl|bosTau2|chr16 (19487139-19487579)
               

               
               172-612, gnl|canFam2|chr7 (40298977-40299474)
               

               
               172-612, gnl|dasNov1|scaffold_20290 (1333-815)
               

               
               172-612, gnl|echTel1|scaffold_278877 (42259-41747)
               

               
               172-612, gnl|galGal2|chr3 (30204800-30204288)
               

               
               172-612, gnl|hg17|chr1 (243080831-243081338)
               

               
               172-612, gnl|Hg17|chr1 (243080853-243081292)
               

               
               172-612, gnl|loxAfr1|scaffold_1871 (18839-19344)
               

               
               172-612, gnl|mm7|chr1 (179559385-179559891)
               

               
               172-612, gnl|Mm7|chr1 (179559411-179559853)
               

               
               172-612, gnl|monDom2|scaffold_13 (36456956-36456452)
               

               
               172-612, gnl|oryCun1|scaffold_155746 (5305-4798)
               

               
               172-612, gnl|panTro1|chr1_random (54327554-54328061)
               

               
               172-612, gnl|rheMac2|chr1 (210425661-210425154)
               

               
               172-612, gnl|rn3|chr13 (95466347-95466844)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pla (0.133672)
               

               
               jej (0.0989218)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)
               

               
               jej (0.0989218)

	172-288, - strand, RNAz p=0.665
	489-612, - strand, RNAz p=0.809649

	172-612, gnl\|bosTau2\|chr16 (19487139-19487579)
	172-612, gnl\|canFam2\|chr7 (40298977-40299474)
	172-612, gnl\|dasNov1\|scaffold_20290 (1333-815)
	172-612, gnl\|echTel1\|scaffold_278877 (42259-41747)
	172-612, gnl\|galGal2\|chr3 (30204800-30204288)
	172-612, gnl\|hg17\|chr1 (243080831-243081338)
	172-612, gnl\|Hg17\|chr1 (243080853-243081292)
	172-612, gnl\|loxAfr1\|scaffold_1871 (18839-19344)
	172-612, gnl\|mm7\|chr1 (179559385-179559891)
	172-612, gnl\|Mm7\|chr1 (179559411-179559853)
	172-612, gnl\|monDom2\|scaffold_13 (36456956-36456452)
	172-612, gnl\|oryCun1\|scaffold_155746 (5305-4798)
	172-612, gnl\|panTro1\|chr1_random (54327554-54328061)
	172-612, gnl\|rheMac2\|chr1 (210425661-210425154)
	172-612, gnl\|rn3\|chr13 (95466347-95466844)