Non-Coding RNA Search

Ss1.1-Ova1-OVR010031E08.5

Sequence:


               
               AAGGTCTAGGAGTGAGCAGGAGGGAACCTGGAAGTGGCGCGCAGACTGCAGATCGAGGCC
GGCGATGGAAGGGAACGCCCCGGATGGCACCGGCCCCGTGCACGTCCCATTTGGGCACAT
TGTGGCCAATGAGAAATGGCGTGGGTCGCAGCTGGCACAGGGAATGCAAGGGAAAATTAA
ACTCATCTTTGAGGATGGCCTGACACCGGTAGATTTTTACTTACCTAGCAGATCCTGCAT
TCTTTATATCACCGAAGCTGATTTAGTGGCAGGAAATGGCTACAGAAAGAGACTTGTCCG
AGTTAGAAATTCCACTAAACTTCAAGCAATCGTAGTAGTTGAAAAAACGCAGATGAGTGA
ACAGTACTTTCCAGCTGCACAGAAATTTACTGTCCTGGATCTTGGGATGGTGTTGCTTCC
AGTGGCCAACCAGATAGAAGCGGCCTGCCTCATTACCCAGTTAGTTCAAGAACAAACCAA
AGAGCCCAGCAAGAACCCTGTTCTCAGGAGGAAGCGGGCTGTGATCTCTGAGCCAGCCCT
CCTTCGAACTGTGCAACGGATCCCAGGAGTTGGAAAAGTGAAGGCTCCCCTCCTGCTCCA
GAGGTTTCCAAGTATCCAGCAGCTCAGCAATGCTTCTGTCCAGGAACTGGAGCCAGTGGT
TGGACAGGCAGTGGCACGGCACGTCCATGCCTTCTTCACCCAGCCCAGGTGACCACTCGT
CTCAAAGCACCTCCTTTACACTGTGGACCAGACGGCAGGATCTGGCTTTTGCTTTAAGGA
CAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGGTCTAGGAGTGAGCAGGAGGGAACCTGGAAGTGGCGCGCAGACTGCAGATCGAGGCC
GGCGATGGAAGGGAACGCCCCGGATGGCACCGGCCCCGTGCACGTCCCATTTGGGCACAT
TGTGGCCAATGAGAAATGGCGTGGGTCGCAGCTGGCACAGGGAATGCAAGGGAAAATTAA
ACTCATCTTTGAGGATGGCCTGACACCGGTAGATTTTTACTTACCTAGCAGATCCTGCAT
TCTTTATATCACCGAAGCTGATTTAGTGGCAGGAAATGGCTACAGAAAGAGACTTGTCCG
AGTTAGAAATTCCACTAAACTTCAAGCAATCGTAGTAGTTGAAAAAACGCAGATGAGTGA
ACAGTACTTTCCAGCTGCACAGAAATTTACTGTCCTGGATCTTGGGATGGTGTTGCTTCC
AGTGGCCAACCAGATAGAAGCGGCCTGCCTCATTACCCAGTTAGTTCAAGAACAAACCAA
AGAGCCCAGCAAGAACCCTGTTCTCAGGAGGAAGCGGGCTGTGATCTCTGAGCCAGCCCT
CCTTCGAACTGTGCAACGGATCCCAGGAGTTGGAAAAGTGAAGGCTCCCCTCCTGCTCCA
GAGGTTTCCAAGTATCCAGCAGCTCAGCAATGCTTCTGTCCAGGAACTGGAGCCAGTGGT
TGGACAGGCAGTGGCACGGCACGTCCATGCCTTCTTCACCCAGCCCAGGTGACCACTCGT
CTCAAAGCACCTCCTTTACACTGTGGACCAGACGGCAGGATCTGGCTTTTGCTTTAAGGA
CAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61843715|ref|XP_587996.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61843715|ref|XP_587996.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               168-310, gnl|bosTau2|chr18 (36295655-36295797)
               

               
               168-310, gnl|Hg17|chr19 (38156169-38156308)
               

               
               168-310, gnl|Mm7|chr7 (32288404-32288263)
               


               
               464-724, gnl|bosTau2|chr18 (36298047-36298307)
               

               
               464-724, gnl|Hg17|chr19 (38159177-38159440)
               

               
               464-724, gnl|Mm7|chr7 (32286117-32285858)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               168-310, gnl|bosTau2|chr18 (36295655-36295797)
               

               
               168-310, gnl|Hg17|chr19 (38156169-38156308)
               

               
               168-310, gnl|Mm7|chr7 (32288404-32288263)
               


               
               464-724, gnl|bosTau2|chr18 (36298047-36298307)
               

               
               464-724, gnl|Hg17|chr19 (38159177-38159440)
               

               
               464-724, gnl|Mm7|chr7 (32286117-32285858)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               sin (0.174948)
               

               
               eje (0.0988338)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.174948)
               

               
               eje (0.0988338)

	168-310, gnl\|bosTau2\|chr18 (36295655-36295797)
	168-310, gnl\|Hg17\|chr19 (38156169-38156308)
	168-310, gnl\|Mm7\|chr7 (32288404-32288263)

	464-724, gnl\|bosTau2\|chr18 (36298047-36298307)
	464-724, gnl\|Hg17\|chr19 (38159177-38159440)
	464-724, gnl\|Mm7\|chr7 (32286117-32285858)