Non-Coding RNA Search

Ss1.1-Ova1-OVR010031G11.5.5

Sequence:


               
               TAGTGCTGCAGCCTTTTGTGGCTTAGCCGGCCTGGGTGCTTTGTGTGTGTTCTGCTCCGT
GCCTGCGGCGCTTCTCCCGGTCAGGGATTCCCGAGGAGATTAGGCGGCAGCTCGACACCC
CCCCCCCCGGAGCAAAGAGCGAGCGCGCCGGCGTGAGCGGCGGGTGTGAGGGCTGCGGGA
AGGGGATTCGCCGCCGAGATGCCGGAGTTCCTGGAAGACCCCTCGGTCCTGACCAAAGAG
AAGTTGAAGAGTGAGCTGGTCGCCAACAATGTGACGCTCCCGGCCGGGGAGCAGCGCAAA
GACGTGTACGTGCAGCTCTACCTGCAGCACCTTACGGCGCGCAACCGGCCGACGCTCGCC
GCGGGTGCCAACAGCAAGGGGCCCCCGGACTTCTCCAGCGACGAGGAGCGCGAGCCTACC
CCGGTCCTCGGCTCCGGGGCCGCCGCCGCGGGCCGCAGCCGCGCCGCCGTCGGCAGGGTA
AGGACGCCCAGCAGGGGCCACAAAGGCAGGCGTTGAGCGGCGGGCGCCTCCCCCTCGCCC
CGCGCGCTGGCAGCCCTCTTCCTCGGCGCCCTCTCGGGCCTTGTCGGCATCGGGGCGGTC
CACGCGCGCGACCAGAAGGCTGGCCTGTAGGTCTGCGGACGCTGCGCTCGGCCCCTTCGT
CGCGGGCTCGTGGGTTCTGATCGGGGAGGGCGCCGGAGAGAGGAGTCCCGAAGTTGGGGC
CGGGAGGCTTCGGGAGGTATTGAACTCGGCGTTGGCTCTCGGGTTGGTGCGGGCGATGGG
CGCGCGCGGACAGCTCAGTGCTGCTGGACCCCAGGCCCCCGGGAGTGGGTAGTTCGGCGA
GGCCTTCTGTGCCCCTTTCGAAAGCCCTAAGAAGGGTGAGCTCGAAACGCCTGTAGGTTA
CGTTCGAGCGTTTTCCCGCTTTATTAACCGAAAAGGCTAGCAACCGAGTCTCAGAGCGCT
CCCTGGAGGGCAATTTGTGGCATACTAATATCTAACCAAATTTTGAAATAAAGACATTCC
CGCCCTTTTATGTTTTTGCATATGGAGGGCTTTTTGAACGTTGTATGTTTTTCCTTGGTT
GTGTTGCTCTTTTCCAGCAGCAGGCCGTCTTTTGGCGGGGCAGCGTTTTTCTAAATCGAA
TGAGCATTTAAAAATACATCTTTGAGCGGTTATCACAGATGCTCAAATATTTGAAAATTC
TGGTTCCTAAGAGCTCGGGGGTTGGGTTTTGTTTTGTTTTTTCCTTTTGGTAAACTTGCA
TGAAGAAAGGAGAGACTTTGGAATCAGGAAAAATGTGTATTTCGTGACATTCTGCTCTGT
CAGTGTTGCAATTTGGAATCCCTAGTCCCCGGTAAATCTCAGATTGGCTCCGGCAAATGC
ATATTTTGTTTGAGAATAGTTTGGGTTTTTTGTTCTATGGGGTTTTATGTGCTGTTTTGC
TAGTATGCATCTGCCTAGTTATCAGGCCTCAAATCATGATCGAATGTAGTTAAAACTAGT
GATGGGTGTAACGTACAGTGCTTTCTAAAACATTGAAAGTGGAGCGTGGAGTTGGTGGTA
CTGATTATACCAGTATAACCCAGAAGCACTGTTTCTTTCAAATTTAGGTTACTTTTAATT
TTAAAAAACGTATCCGATGTGTTTCTTCTATTACCCAGCTGTGAATGAAAAATATAGTAA
ACGTATGTAGATTTAATTAAAATTGAAAGCCTTATGTCTTAAATCAGTGCCTGGCACATA
GTAGTGCCAAATAAATATTTGATAAGTAAAAGATCAGTCGCACCTTATTGTTTCCAGTGT
CTTGTTTTTGTGGATTTAAAGAAAGTCACTGTACTCCATGATACATGGAAATTTACTTTT
GAAATAAAGCATATCACGGATCTGTTTTTCCCTAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGTGCTGCAGCCTTTTGTGGCTTAGCCGGCCTGGGTGCTTTGTGTGTGTTCTGCTCCGT
GCCTGCGGCGCTTCTCCCGGTCAGGGATTCCCGAGGAGATTAGGCGGCAGCTCGACACCC
CCCCCCCCGGAGCAAAGAGCGAGCGCGCCGGCGTGAGCGGCGGGTGTGAGGGCTGCGGGA
AGGGGATTCGCCGCCGAGATGCCGGAGTTCCTGGAAGACCCCTCGGTCCTGACCAAAGAG
AAGTTGAAGAGTGAGCTGGTCGCCAACAATGTGACGCTCCCGGCCGGGGAGCAGCGCAAA
GACGTGTACGTGCAGCTCTACCTGCAGCACCTTACGGCGCGCAACCGGCCGACGCTCGCC
GCGGGTGCCAACAGCAAGGGGCCCCCGGACTTCTCCAGCGACGAGGAGCGCGAGCCTACC
CCGGTCCTCGGCTCCGGGGCCGCCGCCGCGGGCCGCAGCCGCGCCGCCGTCGGCAGGGTA
AGGACGCCCAGCAGGGGCCACAAAGGCAGGCGTTGAGCGGCGGGCGCCTCCCCCTCGCCC
CGCGCGCTGGCAGCCCTCTTCCTCGGCGCCCTCTCGGGCCTTGTCGGCATCGGGGCGGTC
CACGCGCGCGACCAGAAGGCTGGCCTGTAGGTCTGCGGACGCTGCGCTCGGCCCCTTCGT
CGCGGGCTCGTGGGTTCTGATCGGGGAGGGCGCCGGAGAGAGGAGTCCCGAAGTTGGGGC
CGGGAGGCTTCGGGAGGTATTGAACTCGGCGTTGGCTCTCGGGTTGGTGCGGGCGATGGG
CGCGCGCGGACAGCTCAGTGCTGCTGGACCCCAGGCCCCCGGGAGTGGGTAGTTCGGCGA
GGCCTTCTGTGCCCCTTTCGAAAGCCCTAAGAAGGGTGAGCTCGAAACGCCTGTAGGTTA
CGTTCGAGCGTTTTCCCGCTTTATTAACCGAAAAGGCTAGCAACCGAGTCTCAGAGCGCT
CCCTGGAGGGCAATTTGTGGCATACTAATATCTAACCAAATTTTGAAATAAAGACATTCC
CGCCCTTTTATGTTTTTGCATATGGAGGGCTTTTTGAACGTTGTATGTTTTTCCTTGGTT
GTGTTGCTCTTTTCCAGCAGCAGGCCGTCTTTTGGCGGGGCAGCGTTTTTCTAAATCGAA
TGAGCATTTAAAAATACATCTTTGAGCGGTTATCACAGATGCTCAAATATTTGAAAATTC
TGGTTCCTAAGAGCTCGGGGGTTGGGTTTTGTTTTGTTTTTTCCTTTTGGTAAACTTGCA
TGAAGAAAGGAGAGACTTTGGAATCAGGAAAAATGTGTATTTCGTGACATTCTGCTCTGT
CAGTGTTGCAATTTGGAATCCCTAGTCCCCGGTAAATCTCAGATTGGCTCCGGCAAATGC
ATATTTTGTTTGAGAATAGTTTGGGTTTTTTGTTCTATGGGGTTTTATGTGCTGTTTTGC
TAGTATGCATCTGCCTAGTTATCAGGCCTCAAATCATGATCGAATGTAGTTAAAACTAGT
GATGGGTGTAACGTACAGTGCTTTCTAAAACATTGAAAGTGGAGCGTGGAGTTGGTGGTA
CTGATTATACCAGTATAACCCAGAAGCACTGTTTCTTTCAAATTTAGGTTACTTTTAATT
TTAAAAAACGTATCCGATGTGTTTCTTCTATTACCCAGCTGTGAATGAAAAATATAGTAA
ACGTATGTAGATTTAATTAAAATTGAAAGCCTTATGTCTTAAATCAGTGCCTGGCACATA
GTAGTGCCAAATAAATATTTGATAAGTAAAAGATCAGTCGCACCTTATTGTTTCCAGTGT
CTTGTTTTTGTGGATTTAAAGAAAGTCACTGTACTCCATGATACATGGAAATTTACTTTT
GAAATAAAGCATATCACGGATCTGTTTTTCCCTAAC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|14719742|pdb|1H9E|A

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|14719742|pdb|1H9E|A

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               121-1045, gnl|bosTau2|chr28 (7668579-7669436)
               

               
               121-1045, gnl|Hg17|chr12 (97412033-97412912)
               

               
               121-1045, gnl|Mm7|chr10 (90730173-90729388)
               


               
               1120-1528, gnl|bosTau2|chr28 (7679334-7679700)
               

               
               1120-1528, gnl|Hg17|chr12 (97412985-97413688)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               121-1045, gnl|bosTau2|chr28 (7668579-7669436)
               

               
               121-1045, gnl|Hg17|chr12 (97412033-97412912)
               

               
               121-1045, gnl|Mm7|chr10 (90730173-90729388)
               


               
               1120-1528, gnl|bosTau2|chr28 (7679334-7679700)
               

               
               1120-1528, gnl|Hg17|chr12 (97412985-97413688)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ill (0.175593)
               

               
               cbl (0.114797)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               cbl (0.114797)

	121-1045, gnl\|bosTau2\|chr28 (7668579-7669436)
	121-1045, gnl\|Hg17\|chr12 (97412033-97412912)
	121-1045, gnl\|Mm7\|chr10 (90730173-90729388)

	1120-1528, gnl\|bosTau2\|chr28 (7679334-7679700)
	1120-1528, gnl\|Hg17\|chr12 (97412985-97413688)