Ss1.1-Ova1-OVR010031H10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAACAGCCCTGCAGCCAGGGTGAGCAGCCAACAAGACAGCTTCCAGCTTTGAGCCTGGG TCACCATCAGCTTCCTGCCCAGAGCCGTGTTCTCACACCCAGGGGACAGGACGCCTCGCA GGCCGTGGAGGACCAGGAGACTGAGTGGTACAGGAGTCTCCCTGGAGCAGGTTCTGTGGC CACAGGCTCCTGCAGAGTGTGAAGGAGACCCCACATATTTCTCCAGCTGTTTCAGCCCAA ACCGTCTTCTGTGGCCACCTCTCCAGGGGCTCGTGGCTCGCATTCCCTGAGGAAGAGCCA TGAAGAAGCGGTACCTGCTGCTGGCCCTGGCAGCTGTGGCCCTAGTGCTCCTCATCCTTG GCCTCTGCCTCTGGCTACCTTCGAACTCCAAGCCACACAACCATGTGTACCCCAGGGCAG CTGTGGCCGCGGATGCCCTGCGCTGCTCAGAGATTGGGAGGGACACACTGCGGGACGGCG GTTCGGCTGTAGATGCTGCCATCGCGGCCCTGCTGTGCGTGGGGCTCATGAACGCTCACA GCATGGGCATCGGGGGTGGCCTGTTCCTTACCATCTACAACAGCACCACGCGAAAGGCTG AGATCATCAATGCCCGAGAGGTGGCCCCTCGGCTGGCCTCTGCCAGCATGTTCAACAGCT CGGAGCAGTCGGAGGAAGGAGGACTGTCAGTGGCGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAACAGCCCTGCAGCCAGGGTGAGCAGCCAACAAGACAGCTTCCAGCTTTGAGCCTGGG TCACCATCAGCTTCCTGCCCAGAGCCGTGTTCTCACACCCAGGGGACAGGACGCCTCGCA GGCCGTGGAGGACCAGGAGACTGAGTGGTACAGGAGTCTCCCTGGAGCAGGTTCTGTGGC CACAGGCTCCTGCAGAGTGTGAAGGAGACCCCACATATTTCTCCAGCTGTTTCAGCCCAA ACCGTCTTCTGTGGCCACCTCTCCAGGGGCTCGTGGCTCGCATTCCCTGAGGAAGAGCCA TGAAGAAGCGGTACCTGCTGCTGGCCCTGGCAGCTGTGGCCCTAGTGCTCCTCATCCTTG GCCTCTGCCTCTGGCTACCTTCGAACTCCAAGCCACACAACCATGTGTACCCCAGGGCAG CTGTGGCCGCGGATGCCCTGCGCTGCTCAGAGATTGGGAGGGACACACTGCGGGACGGCG GTTCGGCTGTAGATGCTGCCATCGCGGCCCTGCTGTGCGTGGGGCTCATGAACGCTCACA GCATGGGCATCGGGGGTGGCCTGTTCCTTACCATCTACAACAGCACCACGCGAAAGGCTG AGATCATCAATGCCCGAGAGGTGGCCCCTCGGCTGGCCTCTGCCAGCATGTTCAACAGCT CGGAGCAGTCGGAGGAAGGAGGACTGTCAGTGGCGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 327-421, + strand, RNAz p=0.897073 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 327-421, + strand, RNAz p=0.897073 |
| Aligned organism(s): 67 entry(ies) | More info |
| Aligned organism(s): 67 entry(ies) | Help | Less info |
| 294-461, gnl|bosTau2|chr17 (44732297-44732131) | |
| 294-461, gnl|canFam2|chr26 (31369772-31369280) | |
| 294-461, gnl|canFam2|chr26 (31369446-31369575) | |
| 294-461, gnl|canFam2|chr26 (31369585-31369407) | |
| 294-461, gnl|canFam2|chr26 (31369585-31369410) | |
| 294-461, gnl|canFam2|chr26 (31369408-31369591) | |
| 294-461, gnl|canFam2|chr26 (31369608-31369449) | |
| 294-461, gnl|danRer3|chr16 (40667228-40667090) | |
| 294-461, gnl|danRer3|chr16 (40667080-40667263) | |
| 294-461, gnl|danRer3|chr16 (40667080-40667263) | |
| 294-461, gnl|danRer3|chr16 (40667228-40667075) | |
| 294-461, gnl|danRer3|chr16 (40667075-40667225) | |
| 294-461, gnl|dasNov1|scaffold_206753 (1769-2195) | |
| 294-461, gnl|dasNov1|scaffold_206753 (2084-1964) | |
| 294-461, gnl|dasNov1|scaffold_206753 (1954-2119) | |
| 294-461, gnl|dasNov1|scaffold_206753 (1954-2117) | |
| 294-461, gnl|dasNov1|scaffold_206753 (2119-1947) | |
| 294-461, gnl|dasNov1|scaffold_206753 (1924-2081) | |
| 294-461, gnl|fr1|chrUn (41975544-41975412) | |
| 294-461, gnl|fr1|chrUn (60408975-60408791) | |
| 294-461, gnl|fr1|chrUn (60408975-60408794) | |
| 294-461, gnl|fr1|chrUn (41975544-41975399) | |
| 294-461, gnl|fr1|chrUn (60408986-60408829) | |
| 294-461, gnl|galGal2|chr15 (8323849-8323720) | |
| 294-461, gnl|galGal2|chr15 (8323710-8323884) | |
| 294-461, gnl|galGal2|chr15 (8323710-8323882) | |
| 294-461, gnl|hg17|chr13_random (99385-99544) | |
| 294-461, gnl|hg17|chr2 (91385838-91386019) | |
| 294-461, gnl|hg17|chr22 (22337081-22337548) | |
| 294-461, gnl|hg17|chr22 (23331632-23331761) | |
| 294-461, gnl|hg17|chr22 (19904231-19904406) | |
| 294-461, gnl|hg17|chr22 (17153123-17153295) | |
| 294-461, gnl|Hg17|chr22 (23331597-23331767) | |
| 294-461, gnl|loxAfr1|scaffold_211580 (115-578) | |
| 294-461, gnl|loxAfr1|scaffold_211580 (467-341) | |
| 294-461, gnl|loxAfr1|scaffold_211580 (331-503) | |
| 294-461, gnl|loxAfr1|scaffold_211580 (331-500) | |
| 294-461, gnl|loxAfr1|scaffold_211580 (501-324) | |
| 294-461, gnl|loxAfr1|scaffold_211580 (282-464) | |
| 294-461, gnl|mm7|chr10 (75230215-75229780) | |
| 294-461, gnl|mm7|chr10 (75229916-75230042) | |
| 294-461, gnl|mm7|chr10 (75230052-75229880) | |
| 294-461, gnl|mm7|chr10 (75230052-75229883) | |
| 294-461, gnl|mm7|chr10 (75229881-75230059) | |
| 294-461, gnl|mm7|chr10 (75230074-75229919) | |
| 294-461, gnl|Mm7|chr10 (75229881-75230048) | |
| 294-461, gnl|monDom2|scaffold_259 (22732-22855) | |
| 294-461, gnl|monDom2|scaffold_259 (22865-22691) | |
| 294-461, gnl|monDom2|scaffold_259 (22865-22693) | |
| 294-461, gnl|monDom2|scaffold_259 (22691-22876) | |
| 294-461, gnl|monDom2|scaffold_259 (22893-22735) | |
| 294-461, gnl|panTro1|chr12 (94356563-94356692) | |
| 294-461, gnl|panTro1|chr12 (94356528-94356709) | |
| 294-461, gnl|panTro1|chr12 (94356725-94356566) | |
| 294-461, gnl|panTro1|chr23 (22348654-22349125) | |
| 294-461, gnl|panTro1|chr23 (19857947-19858122) | |
| 294-461, gnl|panTro1|chr23 (17074075-17074247) | |
| 294-461, gnl|rheMac2|chr10 (68577238-68576793) | |
| 294-461, gnl|rheMac2|chr10 (68024108-68024237) | |
| 294-461, gnl|rheMac2|chr10 (68024247-68024072) | |
| 294-461, gnl|rheMac2|chr10 (68024247-68024075) | |
| 294-461, gnl|rheMac2|chr10 (68024073-68024254) | |
| 294-461, gnl|rheMac2|chr10 (68024271-68024111) | |
| 294-461, gnl|tetNig1|chr12 (11883395-11883550) | |
| 294-461, gnl|tetNig1|chr12 (11883550-11883395) | |
| 294-461, gnl|tetNig1|chr4 (1662809-1662650) | |
| 294-461, gnl|tetNig1|chr4 (1662809-1662650) |
| Aligned organism(s): 67 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 294-461, gnl|bosTau2|chr17 (44732297-44732131) | |
| 294-461, gnl|canFam2|chr26 (31369772-31369280) | |
| 294-461, gnl|canFam2|chr26 (31369446-31369575) | |
| 294-461, gnl|canFam2|chr26 (31369585-31369407) | |
| 294-461, gnl|canFam2|chr26 (31369585-31369410) | |
| 294-461, gnl|canFam2|chr26 (31369408-31369591) | |
| 294-461, gnl|canFam2|chr26 (31369608-31369449) | |
| 294-461, gnl|danRer3|chr16 (40667228-40667090) | |
| 294-461, gnl|danRer3|chr16 (40667080-40667263) | |
| 294-461, gnl|danRer3|chr16 (40667080-40667263) | |
| 294-461, gnl|danRer3|chr16 (40667228-40667075) | |
| 294-461, gnl|danRer3|chr16 (40667075-40667225) | |
| 294-461, gnl|dasNov1|scaffold_206753 (1769-2195) | |
| 294-461, gnl|dasNov1|scaffold_206753 (2084-1964) | |
| 294-461, gnl|dasNov1|scaffold_206753 (1954-2119) | |
| 294-461, gnl|dasNov1|scaffold_206753 (1954-2117) | |
| 294-461, gnl|dasNov1|scaffold_206753 (2119-1947) | |
| 294-461, gnl|dasNov1|scaffold_206753 (1924-2081) | |
| 294-461, gnl|fr1|chrUn (41975544-41975412) | |
| 294-461, gnl|fr1|chrUn (60408975-60408791) | |
| 294-461, gnl|fr1|chrUn (60408975-60408794) | |
| 294-461, gnl|fr1|chrUn (41975544-41975399) | |
| 294-461, gnl|fr1|chrUn (60408986-60408829) | |
| 294-461, gnl|galGal2|chr15 (8323849-8323720) | |
| 294-461, gnl|galGal2|chr15 (8323710-8323884) | |
| 294-461, gnl|galGal2|chr15 (8323710-8323882) | |
| 294-461, gnl|hg17|chr13_random (99385-99544) | |
| 294-461, gnl|hg17|chr2 (91385838-91386019) | |
| 294-461, gnl|hg17|chr22 (22337081-22337548) | |
| 294-461, gnl|hg17|chr22 (23331632-23331761) | |
| 294-461, gnl|hg17|chr22 (19904231-19904406) | |
| 294-461, gnl|hg17|chr22 (17153123-17153295) | |
| 294-461, gnl|Hg17|chr22 (23331597-23331767) | |
| 294-461, gnl|loxAfr1|scaffold_211580 (115-578) | |
| 294-461, gnl|loxAfr1|scaffold_211580 (467-341) | |
| 294-461, gnl|loxAfr1|scaffold_211580 (331-503) | |
| 294-461, gnl|loxAfr1|scaffold_211580 (331-500) | |
| 294-461, gnl|loxAfr1|scaffold_211580 (501-324) | |
| 294-461, gnl|loxAfr1|scaffold_211580 (282-464) | |
| 294-461, gnl|mm7|chr10 (75230215-75229780) | |
| 294-461, gnl|mm7|chr10 (75229916-75230042) | |
| 294-461, gnl|mm7|chr10 (75230052-75229880) | |
| 294-461, gnl|mm7|chr10 (75230052-75229883) | |
| 294-461, gnl|mm7|chr10 (75229881-75230059) | |
| 294-461, gnl|mm7|chr10 (75230074-75229919) | |
| 294-461, gnl|Mm7|chr10 (75229881-75230048) | |
| 294-461, gnl|monDom2|scaffold_259 (22732-22855) | |
| 294-461, gnl|monDom2|scaffold_259 (22865-22691) | |
| 294-461, gnl|monDom2|scaffold_259 (22865-22693) | |
| 294-461, gnl|monDom2|scaffold_259 (22691-22876) | |
| 294-461, gnl|monDom2|scaffold_259 (22893-22735) | |
| 294-461, gnl|panTro1|chr12 (94356563-94356692) | |
| 294-461, gnl|panTro1|chr12 (94356528-94356709) | |
| 294-461, gnl|panTro1|chr12 (94356725-94356566) | |
| 294-461, gnl|panTro1|chr23 (22348654-22349125) | |
| 294-461, gnl|panTro1|chr23 (19857947-19858122) | |
| 294-461, gnl|panTro1|chr23 (17074075-17074247) | |
| 294-461, gnl|rheMac2|chr10 (68577238-68576793) | |
| 294-461, gnl|rheMac2|chr10 (68024108-68024237) | |
| 294-461, gnl|rheMac2|chr10 (68024247-68024072) | |
| 294-461, gnl|rheMac2|chr10 (68024247-68024075) | |
| 294-461, gnl|rheMac2|chr10 (68024073-68024254) | |
| 294-461, gnl|rheMac2|chr10 (68024271-68024111) | |
| 294-461, gnl|tetNig1|chr12 (11883395-11883550) | |
| 294-461, gnl|tetNig1|chr12 (11883550-11883395) | |
| 294-461, gnl|tetNig1|chr4 (1662809-1662650) | |
| 294-461, gnl|tetNig1|chr4 (1662809-1662650) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| duo (0.172801) | |
| cov (0.132153) | |
| med (0.116252) |