Non-Coding RNA Search

Ss1.1-Ova1-OVR010032D11.5

Sequence:


               
               ACGCATGCGCAAGGCACGAGCCCGCTGACAGATTCGCGGTGGCGGTGGTGGCGGCGGCGG
CCCTGTATTGCGGGGAATGGGAATCCTAGGTCTCTGACTGAGCACCGCCCCCGCCTCCCT
GCCCCCGACATGGCTCAGGAGAAGATGGAGCTAGACCTGGAGCTGCCTCCGGGCACGGGT
GGGAGCCCGGCGGAGGGCGGCGGCAGTGGTGGCGGCGGGGGCCTCAGGAGGTCTAACAGC
GCCCCCCTCATCCACGGCCTCAGTGACACTTCGCCGGTGTTCCAGGCCGAGGCGCCGAGC
GCCAGGCGGAACAGCACAACGTTCCCGAACCGCCACGGCCTGCTGCTACCAGCCTCCCCC
GTCCGTATGCACAGCAGCCGCTTGCACCAGATCAAACAAGAGGAGGGCATGGACTTGATC
AACCGAGAGACGGTCCACGAGCGCGAGGTGCAGAACGCAATGCAGATAAGCCACTCCTGG
GAGGAAAGTTTCAGCCTGAGTGACAACGACGTGGAGAAATCCGCCTCCCCGAAACGCATT
GATTTCATTCCAGTGTCACCAGCACCGTCACCCACCCGGGGAATTGGAAAGCAGTGTTTT
TCACCGTCTTTGCAAAGTTTTGTGAGTAGCAATGGATTGCCTCCAAGTCCTATTCCCAGC
CCAACGACCCGATTTACTACCCGCAGAAGCCAGAGTCCCATTAATTGCATTAGACCAAGT
GTTCTTGGACCATTGAAAAGAAAATGTGAAATGGAAACTGAATATCAGCCAAAGAGATTT
TTCCAGGGCATCACCAACATGCTTTCTTCTGACGTTGCACAACTGTCAGATCCTGGTGTG
TGTGTATCTTCCGATACCCTTGATGGAAACAGCAGCAGTGCCGGATCTTCTTGTAACTCA
CCAGCGAAAGTCAGCACTACCACCGACTCTCCTGTATCGCCTGCCCAAGCGGCCTCTCCA
TTTATTCCAGTAGATGAACTTTCATCTAAGTGATTCACCCACCCATCCTGAGACTCGGTT
TTGTTTTTGTCTTTGCAATGGAGAGAAAAATCAAGCTGGAGCAAGCACTGAACTTTGTCG
ATTAATTTGAGGCTATTTCCTATTTGACCCTTTTCCTTTTTTGGAATTTCCTGAAATGTT
GTTATTCTAGAGAACTTTATGTCAGGTTCCTGCAGATGCCCTTGACTTCAGTGTAGTAAT
ATTTTCAGACGTTTTCCCAATAAGTGTGTTGAAGCATACATCTTTATGCTGCTAATATGT
CTAAATACATATGTTATCCCTTGATTTTTTAAAATAACTGAGAGCTCTATTTATTTATGG
GATTATTAAGTTCTGATGCAAATATAAATGTTGAATTAATCAGCATAGTAAACTGATGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGCATGCGCAAGGCACGAGCCCGCTGACAGATTCGCGGTGGCGGTGGTGGCGGCGGCGG
CCCTGTATTGCGGGGAATGGGAATCCTAGGTCTCTGACTGAGCACCGCCCCCGCCTCCCT
GCCCCCGACATGGCTCAGGAGAAGATGGAGCTAGACCTGGAGCTGCCTCCGGGCACGGGT
GGGAGCCCGGCGGAGGGCGGCGGCAGTGGTGGCGGCGGGGGCCTCAGGAGGTCTAACAGC
GCCCCCCTCATCCACGGCCTCAGTGACACTTCGCCGGTGTTCCAGGCCGAGGCGCCGAGC
GCCAGGCGGAACAGCACAACGTTCCCGAACCGCCACGGCCTGCTGCTACCAGCCTCCCCC
GTCCGTATGCACAGCAGCCGCTTGCACCAGATCAAACAAGAGGAGGGCATGGACTTGATC
AACCGAGAGACGGTCCACGAGCGCGAGGTGCAGAACGCAATGCAGATAAGCCACTCCTGG
GAGGAAAGTTTCAGCCTGAGTGACAACGACGTGGAGAAATCCGCCTCCCCGAAACGCATT
GATTTCATTCCAGTGTCACCAGCACCGTCACCCACCCGGGGAATTGGAAAGCAGTGTTTT
TCACCGTCTTTGCAAAGTTTTGTGAGTAGCAATGGATTGCCTCCAAGTCCTATTCCCAGC
CCAACGACCCGATTTACTACCCGCAGAAGCCAGAGTCCCATTAATTGCATTAGACCAAGT
GTTCTTGGACCATTGAAAAGAAAATGTGAAATGGAAACTGAATATCAGCCAAAGAGATTT
TTCCAGGGCATCACCAACATGCTTTCTTCTGACGTTGCACAACTGTCAGATCCTGGTGTG
TGTGTATCTTCCGATACCCTTGATGGAAACAGCAGCAGTGCCGGATCTTCTTGTAACTCA
CCAGCGAAAGTCAGCACTACCACCGACTCTCCTGTATCGCCTGCCCAAGCGGCCTCTCCA
TTTATTCCAGTAGATGAACTTTCATCTAAGTGATTCACCCACCCATCCTGAGACTCGGTT
TTGTTTTTGTCTTTGCAATGGAGAGAAAAATCAAGCTGGAGCAAGCACTGAACTTTGTCG
ATTAATTTGAGGCTATTTCCTATTTGACCCTTTTCCTTTTTTGGAATTTCCTGAAATGTT
GTTATTCTAGAGAACTTTATGTCAGGTTCCTGCAGATGCCCTTGACTTCAGTGTAGTAAT
ATTTTCAGACGTTTTCCCAATAAGTGTGTTGAAGCATACATCTTTATGCTGCTAATATGT
CTAAATACATATGTTATCCCTTGATTTTTTAAAATAACTGAGAGCTCTATTTATTTATGG
GATTATTAAGTTCTGATGCAAATATAAATGTTGAATTAATCAGCATAGTAAACTGATGTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q96E09_HUMAN

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q96E09_HUMAN

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               799-998, - strand, RNAz p=0.870725

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               799-998, - strand, RNAz p=0.870725

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1380, gnl|bosTau2|chr8 (20958690-20960061)
               

               
               1-1380, gnl|Hg17|chr9 (68624505-68625874)
               

               
               1-1380, gnl|Mm7|chr19 (24177474-24176088)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1380, gnl|bosTau2|chr8 (20958690-20960061)
               

               
               1-1380, gnl|Hg17|chr9 (68624505-68625874)
               

               
               1-1380, gnl|Mm7|chr19 (24177474-24176088)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

Help | Less info


               
               cty (0.20816)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.20816)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)

	1-1380, gnl\|bosTau2\|chr8 (20958690-20960061)
	1-1380, gnl\|Hg17\|chr9 (68624505-68625874)
	1-1380, gnl\|Mm7\|chr19 (24177474-24176088)

	cty (0.20816)
	lin (0.145603)
	lnt (0.142308)
	csk (0.140746)
	ssp (0.13552)
	ste (0.135208)
	lyg (0.133103)
	cov (0.132153)
	ese (0.126502)
	tra (0.123092)
	cbl (0.114797)
	spc (0.113366)