Non-Coding RNA Search

Ss1.1-Ova1-OVR010032F03.5

Sequence:


               
               ACGCGAGATTTGCTTTTGGCCCTGACCCTCAGCCGTTCCTTCCGGGAGTCGGAACTGCGG
TATTCAAGCCTGAGTGCAAGCCGATGCTGAGTGGGCAGCTGGTCGGACGCCTGTTCTCCA
TGGCCGGGCGCGTCTGTCTGTCCCGGAGCAGCACGGGAGCAGGGACCATCGGTCCCGTCG
AGGCCGCCATTCGCATGAAGCTGGAACAGGCCCTGAACCCCGAGGTGCTGGAGCTGCGTA
ATGAGAGCGGTGGCCACGCAGTCCCACCAGGCAGTGAGACGCATTTCCGCGTGGCTGTGG
TGAGCTCTCGCTTCGAGGGATTGAGCCCCCTACAACGGCATCGGCTGGTCCACACGGCGC
TGTCCGAAGAACTGGCTGGGCCGGTCCATGCCCTGGCCATACAGGCGCGCACCCCTGCCC
AGTGGAGAGAGAACCCTCAACTGGACACGAGCCCCCCTTGCCTGGGCGGGAGCAAGAAAA
CTCGAGGAACTCCCTGAGTCTTGAGAGAGGGAGGACGAGGAGCCAAATGGGTTGGGTGAG
AATAAACTACTGGGGCCTTCTTCCCTTCAATATCTGTAAGAGATGAGGACCCTGGGCCCC
ATTCAACTGGCATATACTTATTCTCTGGAGACAGCAATTCATTTCACATCAAGGCTAACC
CAAGGAAAGAGTAGAATCTCTCTCTACAGCTCTTGGCCTGGACCATTCAGGAAAATGTTT
TGTGTTAAATTGTGACTAAGGAACCACCAGACCTTATGAGTTGCAGATAATTCTGTACAT
TAAAAGAGAAATTATCGTAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGCGAGATTTGCTTTTGGCCCTGACCCTCAGCCGTTCCTTCCGGGAGTCGGAACTGCGG
TATTCAAGCCTGAGTGCAAGCCGATGCTGAGTGGGCAGCTGGTCGGACGCCTGTTCTCCA
TGGCCGGGCGCGTCTGTCTGTCCCGGAGCAGCACGGGAGCAGGGACCATCGGTCCCGTCG
AGGCCGCCATTCGCATGAAGCTGGAACAGGCCCTGAACCCCGAGGTGCTGGAGCTGCGTA
ATGAGAGCGGTGGCCACGCAGTCCCACCAGGCAGTGAGACGCATTTCCGCGTGGCTGTGG
TGAGCTCTCGCTTCGAGGGATTGAGCCCCCTACAACGGCATCGGCTGGTCCACACGGCGC
TGTCCGAAGAACTGGCTGGGCCGGTCCATGCCCTGGCCATACAGGCGCGCACCCCTGCCC
AGTGGAGAGAGAACCCTCAACTGGACACGAGCCCCCCTTGCCTGGGCGGGAGCAAGAAAA
CTCGAGGAACTCCCTGAGTCTTGAGAGAGGGAGGACGAGGAGCCAAATGGGTTGGGTGAG
AATAAACTACTGGGGCCTTCTTCCCTTCAATATCTGTAAGAGATGAGGACCCTGGGCCCC
ATTCAACTGGCATATACTTATTCTCTGGAGACAGCAATTCATTTCACATCAAGGCTAACC
CAAGGAAAGAGTAGAATCTCTCTCTACAGCTCTTGGCCTGGACCATTCAGGAAAATGTTT
TGTGTTAAATTGTGACTAAGGAACCACCAGACCTTATGAGTTGCAGATAATTCTGTACAT
TAAAAGAGAAATTATCGTAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57098783|ref|XP_533041.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57098783|ref|XP_533041.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               358-517, - strand, RNAz p=0.828491

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               358-517, - strand, RNAz p=0.828491

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               79-689, gnl|bosTau2|chr3 (17580609-17579986)
               

               
               79-689, gnl|Hg17|chr1 (146684681-146685298)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               79-689, gnl|bosTau2|chr3 (17580609-17579986)
               

               
               79-689, gnl|Hg17|chr1 (146684681-146685298)

Expressed library(ies): 24 entry(ies)

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Expressed library(ies): 24 entry(ies)

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               pty (0.428143)
               

               
               col (0.390016)
               

               
               mcp (0.341297)
               

               
               cje (0.330469)
               

               
               nco (0.323468)
               

               
               sme (0.305437)
               

               
               cag (0.302389)
               

               
               ssp (0.271039)
               

               
               cov (0.264306)
               

               
               cbe (0.239234)
               

               
               pgl (0.236967)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               csp (0.161186)
               

               
               eli (0.151814)
               

               
               fat (0.147427)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)

Expressed library(ies): 24 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pty (0.428143)
               

               
               col (0.390016)
               

               
               mcp (0.341297)
               

               
               cje (0.330469)
               

               
               nco (0.323468)
               

               
               sme (0.305437)
               

               
               cag (0.302389)
               

               
               ssp (0.271039)
               

               
               cov (0.264306)
               

               
               cbe (0.239234)
               

               
               pgl (0.236967)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               csp (0.161186)
               

               
               eli (0.151814)
               

               
               fat (0.147427)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)

	79-689, gnl\|bosTau2\|chr3 (17580609-17579986)
	79-689, gnl\|Hg17\|chr1 (146684681-146685298)

	pty (0.428143)
	col (0.390016)
	mcp (0.341297)
	cje (0.330469)
	nco (0.323468)
	sme (0.305437)
	cag (0.302389)
	ssp (0.271039)
	cov (0.264306)
	cbe (0.239234)
	pgl (0.236967)
	jej (0.197844)
	fcc (0.197785)
	eje (0.197668)
	ton (0.1755)
	duo (0.172801)
	csp (0.161186)
	eli (0.151814)
	fat (0.147427)
	csk (0.140746)
	nca (0.136874)
	che (0.136314)
	cly (0.120642)
	ebs (0.118301)