Non-Coding RNA Search

Ss1.1-Ova1-OVR010032H05.5

Sequence:


               
               CTCGGCTCGCGGCCGCGCTCGCCCGGCCCGCGCCCATGCAGGCCATCAAGTGCGTGGTGG
TCGGCGACGGCGCCGTGGGGAAGACCTGCTTGCTGATCAGCTACACGACCAACGCCTTCC
CGGGAGAGTACATCCCCACCGTTTTCGACAACTATTCTGCGAATGTGATGGTGGACGGAA
AACCGGTCAACCTGGGCCTGTGGGACACCGCGGGACAGGAGGACTACGACCGCCTGCGGC
CACTCTCCTACCCCCAAACCGACGTCTTTCTGATCTGCTTCTCCCTGGTGAGCCCAGCCT
CCTTCGAGAATGTTCGAGCCAAGTGGTACCCAGAGGTTCGGCACCACTGCCCGCACACGC
CCATCCTTCTGGTGGGCACCAAACTGGACCTCCGTGATGACAAGGACACCATTGAGCGGC
TGCGGGACAAGAAGCTGGCACCTATCACCTACCCCCAGGGCCTGGCCATGGCCCGGGAGA
TCGGCTCTGTCAAGTACCTGGAGTGCTCGGCCCTGACCCAGCGGGGCCTGAAGACAGTGT
TTGACGAGGCCATCCGGGCTGTACTGTGCCCGCCCCCTGTGAAGAAGCCGGGGAAGAAGT
GCACGGTCTTCTAGAACCCCACTTCTGGAGGAGCAGCCCCTGCCCCGCCCCGTCTGTTGC
ATTGCGCTGTCTGGTGTCCCTGAGTCCGCTGGGGGAGTGGTGGGGGTGGGGGGGCGAAGC
ACGGGGTCCTGGCCGCTCCGCTGCCTCTTCCTGGGCCGCAGCTCCAGCCTTCTCCCCTGG
CTCCCAAGGGAGGCCGGGCGGGAGAGGGTCTCCCTCAGGCTGCAGAGGCAGGTCCAGGGC
AGCCCCGGGACGGGCTTCCCTAACGGGGGAGGTGGGGTGGGTTCTGTCCTTGTGCCCCAG
GATGGGGTGGCCCCTTATTTTATACAATAAACGTTCATCTCCTGCCCAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCGGCTCGCGGCCGCGCTCGCCCGGCCCGCGCCCATGCAGGCCATCAAGTGCGTGGTGG
TCGGCGACGGCGCCGTGGGGAAGACCTGCTTGCTGATCAGCTACACGACCAACGCCTTCC
CGGGAGAGTACATCCCCACCGTTTTCGACAACTATTCTGCGAATGTGATGGTGGACGGAA
AACCGGTCAACCTGGGCCTGTGGGACACCGCGGGACAGGAGGACTACGACCGCCTGCGGC
CACTCTCCTACCCCCAAACCGACGTCTTTCTGATCTGCTTCTCCCTGGTGAGCCCAGCCT
CCTTCGAGAATGTTCGAGCCAAGTGGTACCCAGAGGTTCGGCACCACTGCCCGCACACGC
CCATCCTTCTGGTGGGCACCAAACTGGACCTCCGTGATGACAAGGACACCATTGAGCGGC
TGCGGGACAAGAAGCTGGCACCTATCACCTACCCCCAGGGCCTGGCCATGGCCCGGGAGA
TCGGCTCTGTCAAGTACCTGGAGTGCTCGGCCCTGACCCAGCGGGGCCTGAAGACAGTGT
TTGACGAGGCCATCCGGGCTGTACTGTGCCCGCCCCCTGTGAAGAAGCCGGGGAAGAAGT
GCACGGTCTTCTAGAACCCCACTTCTGGAGGAGCAGCCCCTGCCCCGCCCCGTCTGTTGC
ATTGCGCTGTCTGGTGTCCCTGAGTCCGCTGGGGGAGTGGTGGGGGTGGGGGGGCGAAGC
ACGGGGTCCTGGCCGCTCCGCTGCCTCTTCCTGGGCCGCAGCTCCAGCCTTCTCCCCTGG
CTCCCAAGGGAGGCCGGGCGGGAGAGGGTCTCCCTCAGGCTGCAGAGGCAGGTCCAGGGC
AGCCCCGGGACGGGCTTCCCTAACGGGGGAGGTGGGGTGGGTTCTGTCCTTGTGCCCCAG
GATGGGGTGGCCCCTTATTTTATACAATAAACGTTCATCTCCTGCCCAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5U0M8_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5U0M8_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               720-939, + strand, RNAz p=0.999831
               

               
               733-872, - strand, RNAz p=0.985585

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               720-939, + strand, RNAz p=0.999831
               

               
               733-872, - strand, RNAz p=0.985585

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_005052, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_005052, +

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               12-566, gnl|bosTau2|chr11 (61538076-61538634)
               

               
               12-566, gnl|Hg17|chr2 (20568833-20569391)
               

               
               12-566, gnl|Mm7|chr12 (8525687-8525129)
               


               
               720-939, gnl|bosTau2|chr19 (45661713-45661938)
               

               
               720-939, gnl|canFam2|chr9 (3293406-3293156)
               

               
               720-939, gnl|echTel1|scaffold_324221 (47898-48129)
               

               
               720-939, gnl|hg17|chr17 (77585122-77585350)
               

               
               720-939, gnl|Hg17|chr17 (77585141-77585362)
               

               
               720-939, gnl|loxAfr1|scaffold_126626 (1466-1688)
               

               
               720-939, gnl|mm7|chr11 (120832770-120832997)
               

               
               720-939, gnl|Mm7|chr11 (120832787-120833009)
               

               
               720-939, gnl|monDom2|scaffold_18 (15419358-15419663)
               

               
               720-939, gnl|oryCun1|scaffold_198889 (31823-32048)
               

               
               720-939, gnl|rheMac2|chr16 (77472640-77472868)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-566, gnl|bosTau2|chr11 (61538076-61538634)
               

               
               12-566, gnl|Hg17|chr2 (20568833-20569391)
               

               
               12-566, gnl|Mm7|chr12 (8525687-8525129)
               


               
               720-939, gnl|bosTau2|chr19 (45661713-45661938)
               

               
               720-939, gnl|canFam2|chr9 (3293406-3293156)
               

               
               720-939, gnl|echTel1|scaffold_324221 (47898-48129)
               

               
               720-939, gnl|hg17|chr17 (77585122-77585350)
               

               
               720-939, gnl|Hg17|chr17 (77585141-77585362)
               

               
               720-939, gnl|loxAfr1|scaffold_126626 (1466-1688)
               

               
               720-939, gnl|mm7|chr11 (120832770-120832997)
               

               
               720-939, gnl|Mm7|chr11 (120832787-120833009)
               

               
               720-939, gnl|monDom2|scaffold_18 (15419358-15419663)
               

               
               720-939, gnl|oryCun1|scaffold_198889 (31823-32048)
               

               
               720-939, gnl|rheMac2|chr16 (77472640-77472868)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               ebs (0.354904)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.354904)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	720-939, + strand, RNAz p=0.999831
	733-872, - strand, RNAz p=0.985585

	12-566, gnl\|bosTau2\|chr11 (61538076-61538634)
	12-566, gnl\|Hg17\|chr2 (20568833-20569391)
	12-566, gnl\|Mm7\|chr12 (8525687-8525129)

	720-939, gnl\|bosTau2\|chr19 (45661713-45661938)
	720-939, gnl\|canFam2\|chr9 (3293406-3293156)
	720-939, gnl\|echTel1\|scaffold_324221 (47898-48129)
	720-939, gnl\|hg17\|chr17 (77585122-77585350)
	720-939, gnl\|Hg17\|chr17 (77585141-77585362)
	720-939, gnl\|loxAfr1\|scaffold_126626 (1466-1688)
	720-939, gnl\|mm7\|chr11 (120832770-120832997)
	720-939, gnl\|Mm7\|chr11 (120832787-120833009)
	720-939, gnl\|monDom2\|scaffold_18 (15419358-15419663)
	720-939, gnl\|oryCun1\|scaffold_198889 (31823-32048)
	720-939, gnl\|rheMac2\|chr16 (77472640-77472868)

	ebs (0.354904)
	fcc (0.197785)
	fbs (0.175346)
	fhi (0.169578)
	nco (0.161734)
	hyp (0.142837)
	pty (0.142714)
	eep (0.122564)
	ecc (0.115035)
	cty (0.10408)
	nbm (0.0993246)
	jej (0.0989218)