Ss1.1-Ova1-OVR010033A06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGTCCACTAGAGCGATTGGAAGGCGCCGGCGGAACCTGTCAAGCTGGCGCAAGAACTATG TCATGGATCAAGGAAGGAGAGCTGTCATTTTGGGAGCGGTTCTGTGCAAATATTATAAAG GCAGGCCCAATGCCCAAACATATTGCATTTATAATGGATGGGAACCGTCGCTATGCCAGG AAATGCCAAGTGGAGCGGCAGGAGGGCCACTCACAGGGCTTCAACAAACTGGCTGAGACT CTGCGTTGGTGTTTGAACCTGGGCGTCCTAGAGGTGACGGTCTATGCGTTCAGCATTGAG AACTTCAAACGCTCCAAGAGTGAGGTCGACGGGCTAATGGATCTGGCCCGGCAGAAGTTC AGTCGGCTGATGGAAGAACAGGAGAAGCTGCAGAAGCATGGGGTCTGTATCCGGGTCCTG GGTGATCTGCATTTGTTGCCCTTGGATCTCCAGGAGCTGATCGCACAGGCTGTACAGGCC ACCAAGAACTACAACAGGTGTTTCCTGAATGTCTGCTTTGCATACACATCTCGTCACGAG ATCAGCAATGCTGTGAGAGAGATGGCCTGGGGAGTGGAGCAAGGCCTGCTGGATCCCAGT GATGTCTCTGAGTCTCTGCTCGATAAGTGCCTCTATACCAACCACTCTCCTCATCCTGAC ATCTTGATACGGACTTCTGGGGAAGTGAGGCTCAGCGACTTCCTTCTGTGGCAGACCTCC CACTCCTGCTTGGTGTTCCAGCCCGTTCTGTGGCCAGAATACACGTTTTGGAACCTCTGT GAGGCCATCTTGCAGTTCCAGATGAACCATAGCATGCTTCAGCAGAAGGCCCGAGACATG TATGCAGAGGAGCGGAAGAGGCAGCAGCTGGAGAGAGACCAGGCTGCAGTGACAGAGCAG CTGCTGCAAGAGGGGCTCCAGGCCAGTGGAGACACCCAGCTCCGACGGACACGCTTGCAC AAACTCCTAGCCAGAAGGGAAGAGCGAGTCCAAGTCTTCCTGCAGGCGTTGGAACTCAAG CGGGCTGACTGGCTGGCACGTCTGGGCACCGCATCAGCCTGAGTGAGGCTGGCCTCCTGC CACTTCGCCCTGCCCTCTGCCTCCAGGGCCCCACTCCTCTTTCTTGGTGAAAGGCACCTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGTCCACTAGAGCGATTGGAAGGCGCCGGCGGAACCTGTCAAGCTGGCGCAAGAACTATG TCATGGATCAAGGAAGGAGAGCTGTCATTTTGGGAGCGGTTCTGTGCAAATATTATAAAG GCAGGCCCAATGCCCAAACATATTGCATTTATAATGGATGGGAACCGTCGCTATGCCAGG AAATGCCAAGTGGAGCGGCAGGAGGGCCACTCACAGGGCTTCAACAAACTGGCTGAGACT CTGCGTTGGTGTTTGAACCTGGGCGTCCTAGAGGTGACGGTCTATGCGTTCAGCATTGAG AACTTCAAACGCTCCAAGAGTGAGGTCGACGGGCTAATGGATCTGGCCCGGCAGAAGTTC AGTCGGCTGATGGAAGAACAGGAGAAGCTGCAGAAGCATGGGGTCTGTATCCGGGTCCTG GGTGATCTGCATTTGTTGCCCTTGGATCTCCAGGAGCTGATCGCACAGGCTGTACAGGCC ACCAAGAACTACAACAGGTGTTTCCTGAATGTCTGCTTTGCATACACATCTCGTCACGAG ATCAGCAATGCTGTGAGAGAGATGGCCTGGGGAGTGGAGCAAGGCCTGCTGGATCCCAGT GATGTCTCTGAGTCTCTGCTCGATAAGTGCCTCTATACCAACCACTCTCCTCATCCTGAC ATCTTGATACGGACTTCTGGGGAAGTGAGGCTCAGCGACTTCCTTCTGTGGCAGACCTCC CACTCCTGCTTGGTGTTCCAGCCCGTTCTGTGGCCAGAATACACGTTTTGGAACCTCTGT GAGGCCATCTTGCAGTTCCAGATGAACCATAGCATGCTTCAGCAGAAGGCCCGAGACATG TATGCAGAGGAGCGGAAGAGGCAGCAGCTGGAGAGAGACCAGGCTGCAGTGACAGAGCAG CTGCTGCAAGAGGGGCTCCAGGCCAGTGGAGACACCCAGCTCCGACGGACACGCTTGCAC AAACTCCTAGCCAGAAGGGAAGAGCGAGTCCAAGTCTTCCTGCAGGCGTTGGAACTCAAG CGGGCTGACTGGCTGGCACGTCTGGGCACCGCATCAGCCTGAGTGAGGCTGGCCTCCTGC CACTTCGCCCTGCCCTCTGCCTCCAGGGCCCCACTCCTCTTTCTTGGTGAAAGGCACCTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 980-1122, - strand, RNAz p=0.699903 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 980-1122, - strand, RNAz p=0.699903 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 233-394, gnl|bosTau2|chr2 (78304090-78304253) | |
| 233-394, gnl|Hg17|chr1 (26453359-26453522) | |
| 233-394, gnl|Mm7|chr4 (133372742-133372579) | |
| 598-714, gnl|bosTau2|chr2 (78322186-78322302) | |
| 598-714, gnl|Hg17|chr1 (26468422-26468538) | |
| 598-714, gnl|Mm7|chr4 (133361349-133361233) | |
| 821-1140, gnl|bosTau2|chr2 (78332814-78333138) | |
| 821-1140, gnl|canFam2|chr2 (76477796-76477581) | |
| 821-1140, gnl|dasNov1|scaffold_157590 (3095-3310) | |
| 821-1140, gnl|echTel1|scaffold_311021 (43800-43585) | |
| 821-1140, gnl|fr1|chrUn (110397104-110397318) | |
| 821-1140, gnl|galGal2|chr23 (157430-157216) | |
| 821-1140, gnl|hg17|chr1 (26479512-26479727) | |
| 821-1140, gnl|Hg17|chr1 (26479523-26479847) | |
| 821-1140, gnl|mm7|chr4 (133349704-133349489) | |
| 821-1140, gnl|Mm7|chr4 (133349691-133349355) | |
| 821-1140, gnl|monDom2|scaffold_91 (4057316-4057531) | |
| 821-1140, gnl|oryCun1|scaffold_181601 (4748-4962) | |
| 821-1140, gnl|panTro1|chr1 (27170320-27170535) | |
| 821-1140, gnl|rheMac2|chr1 (29101517-29101732) | |
| 821-1140, gnl|rn3|chr5 (152728889-152728674) | |
| 821-1140, gnl|tetNig1|chrUn_random (22564907-22565108) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 233-394, gnl|bosTau2|chr2 (78304090-78304253) | |
| 233-394, gnl|Hg17|chr1 (26453359-26453522) | |
| 233-394, gnl|Mm7|chr4 (133372742-133372579) | |
| 598-714, gnl|bosTau2|chr2 (78322186-78322302) | |
| 598-714, gnl|Hg17|chr1 (26468422-26468538) | |
| 598-714, gnl|Mm7|chr4 (133361349-133361233) | |
| 821-1140, gnl|bosTau2|chr2 (78332814-78333138) | |
| 821-1140, gnl|canFam2|chr2 (76477796-76477581) | |
| 821-1140, gnl|dasNov1|scaffold_157590 (3095-3310) | |
| 821-1140, gnl|echTel1|scaffold_311021 (43800-43585) | |
| 821-1140, gnl|fr1|chrUn (110397104-110397318) | |
| 821-1140, gnl|galGal2|chr23 (157430-157216) | |
| 821-1140, gnl|hg17|chr1 (26479512-26479727) | |
| 821-1140, gnl|Hg17|chr1 (26479523-26479847) | |
| 821-1140, gnl|mm7|chr4 (133349704-133349489) | |
| 821-1140, gnl|Mm7|chr4 (133349691-133349355) | |
| 821-1140, gnl|monDom2|scaffold_91 (4057316-4057531) | |
| 821-1140, gnl|oryCun1|scaffold_181601 (4748-4962) | |
| 821-1140, gnl|panTro1|chr1 (27170320-27170535) | |
| 821-1140, gnl|rheMac2|chr1 (29101517-29101732) | |
| 821-1140, gnl|rn3|chr5 (152728889-152728674) | |
| 821-1140, gnl|tetNig1|chrUn_random (22564907-22565108) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| ill (0.175593) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| ebs (0.118301) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ill (0.175593) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| ebs (0.118301) |