Non-Coding RNA Search

Ss1.1-Ova1-OVR010033B04.5

Sequence:


               
               AGACTGACGTTCAGCTGCAACGCGGGTGGCGGTTTGTCCGGGATGGCGCTGGCGCGGGCC
TGGAAGCAAATGTCGTGGTTCTACTACCAGTACCTGCTGGTCACGGCGCTCTACATGCTG
GAGCCGTGGGAGCGGACTGTGTTCAATTCCATGCTGGTTTCCATCGTGGGGATGGCCCTG
TACACAGGATATGTCTTCATGCCTCAGCACATCATGGCGATACTGCACTACTTTGAAATT
GTACAATGACCAGGATGTGACCGGAATCAAGAGGTTCCTTAGGGAAGAGCCACCGTCTGA
AGTTGGAATGAGACCTCATTCAAATGTCGTAAGAAACTCTTCTAGATGTCAACATAATCA
ATCCTACAAATATAAAGACTAAAATTCATGAGTAGAACAGGAAAGCAATCCTGACTCATG
TGTTGTGTTCTTTATTTTTAATTTTAAAAGGAGCTCTTGTATAGTAGTTTTTGTCTATTT
TAACATTGTAGTCATTTGTACTTTGATATCAGTATTTTCTTAACCTTTGTGACTGTTTCA
ATATTACCCTGTGAAAGCTTTTCTTAATGTAACAACTTTGAGTACATTTTAATTGCCTTC
TATTTCTAAAACCCAAAGTCATTAGTTGGGCTCTACCGTTCTTTCTTGCTATTGTACGGC
AAACATATCTGCCTGGATATATTTCTACTCTTGACCAAAGTTTTGTAAGAAAAATTCAAG
ATTTTGGGCAGGGGGCTGGGGAGGGAGGATATTTTACTGAGAACTATTTACAAAAGACTT
ATCTGTAAGTTTGAACTCAGGAGTACAGTTTTAGCTATCTAGACTCTACTCTTTAACAGC
TTTTGCTTTAAAACTATTAAAGTGTTTCTTAACAATGAAAAAGAAAGATCTTGCTAAAGT
TAAAATAAGGAACATTTCACCTTTTAAATATTTAATTCTTGTGTGGACTCATTTCCAGAA
AATTTTGGTGATGATTCTTGTGACAAATGATGGTTAAGTAGCATTATTATGTAATGCTTA
GTACTGTAGAGTTTTTAATAGAAGGTAAATCAGTTTCCTCTGAGCACCATTAATAACTGC
GAACTTCCTTAAATTTAGTTCCATGATTGTAATGGGTGCTGCAAATGCGTTTGCACATTG
CATATGATGAGATGAATTGTTGATAAAAAATTATAGCAAAAAGAAACATAAACTTGGTTA
AAATTCTTCCATGCTTTGTATTGTTTTTTTTAAAAGATTTTTATTCCTTAAATGTAAAAT
GACTACCTGATTTTTTGATGTAAACTCATTAAATTCAAAGAGAGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGACTGACGTTCAGCTGCAACGCGGGTGGCGGTTTGTCCGGGATGGCGCTGGCGCGGGCC
TGGAAGCAAATGTCGTGGTTCTACTACCAGTACCTGCTGGTCACGGCGCTCTACATGCTG
GAGCCGTGGGAGCGGACTGTGTTCAATTCCATGCTGGTTTCCATCGTGGGGATGGCCCTG
TACACAGGATATGTCTTCATGCCTCAGCACATCATGGCGATACTGCACTACTTTGAAATT
GTACAATGACCAGGATGTGACCGGAATCAAGAGGTTCCTTAGGGAAGAGCCACCGTCTGA
AGTTGGAATGAGACCTCATTCAAATGTCGTAAGAAACTCTTCTAGATGTCAACATAATCA
ATCCTACAAATATAAAGACTAAAATTCATGAGTAGAACAGGAAAGCAATCCTGACTCATG
TGTTGTGTTCTTTATTTTTAATTTTAAAAGGAGCTCTTGTATAGTAGTTTTTGTCTATTT
TAACATTGTAGTCATTTGTACTTTGATATCAGTATTTTCTTAACCTTTGTGACTGTTTCA
ATATTACCCTGTGAAAGCTTTTCTTAATGTAACAACTTTGAGTACATTTTAATTGCCTTC
TATTTCTAAAACCCAAAGTCATTAGTTGGGCTCTACCGTTCTTTCTTGCTATTGTACGGC
AAACATATCTGCCTGGATATATTTCTACTCTTGACCAAAGTTTTGTAAGAAAAATTCAAG
ATTTTGGGCAGGGGGCTGGGGAGGGAGGATATTTTACTGAGAACTATTTACAAAAGACTT
ATCTGTAAGTTTGAACTCAGGAGTACAGTTTTAGCTATCTAGACTCTACTCTTTAACAGC
TTTTGCTTTAAAACTATTAAAGTGTTTCTTAACAATGAAAAAGAAAGATCTTGCTAAAGT
TAAAATAAGGAACATTTCACCTTTTAAATATTTAATTCTTGTGTGGACTCATTTCCAGAA
AATTTTGGTGATGATTCTTGTGACAAATGATGGTTAAGTAGCATTATTATGTAATGCTTA
GTACTGTAGAGTTTTTAATAGAAGGTAAATCAGTTTCCTCTGAGCACCATTAATAACTGC
GAACTTCCTTAAATTTAGTTCCATGATTGTAATGGGTGCTGCAAATGCGTTTGCACATTG
CATATGATGAGATGAATTGTTGATAAAAAATTATAGCAAAAAGAAACATAAACTTGGTTA
AAATTCTTCCATGCTTTGTATTGTTTTTTTTAAAAGATTTTTATTCCTTAAATGTAAAAT
GACTACCTGATTTTTTGATGTAAACTCATTAAATTCAAAGAGAGAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|19923719|ref|NP_612145.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|19923719|ref|NP_612145.1|

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               173-292, - strand, RNAz p=0.537363
               

               
               373-484, - strand, RNAz p=0.813802
               

               
               525-643, - strand, RNAz p=0.729873

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               173-292, - strand, RNAz p=0.537363
               

               
               373-484, - strand, RNAz p=0.813802
               

               
               525-643, - strand, RNAz p=0.729873

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               136-1308, gnl|bosTau2|chr13 (54657285-54658445)
               

               
               136-1308, gnl|Hg17|chr14 (33974273-33973123)
               

               
               136-1308, gnl|Mm7|chr12 (52665826-52664677)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               136-1308, gnl|bosTau2|chr13 (54657285-54658445)
               

               
               136-1308, gnl|Hg17|chr14 (33974273-33973123)
               

               
               136-1308, gnl|Mm7|chr12 (52665826-52664677)

Expressed library(ies): 43 entry(ies)

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Expressed library(ies): 43 entry(ies)

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               ski (0.880411)
               

               
               kid (0.518941)
               

               
               pro (0.512033)
               

               
               ldo (0.485013)
               

               
               tbr (0.462535)
               

               
               tes (0.415628)
               

               
               ssp (0.406559)
               

               
               ste (0.405625)
               

               
               sme (0.305437)
               

               
               isp (0.300752)
               

               
               spl (0.286369)
               

               
               csk (0.281492)
               

               
               lyg (0.266205)
               

               
               ute (0.265569)
               

               
               sug (0.254582)
               

               
               thg (0.253582)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               cbl (0.229595)
               

               
               nms (0.213858)
               

               
               aor (0.195274)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               ret (0.128733)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

Expressed library(ies): 43 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (0.880411)
               

               
               kid (0.518941)
               

               
               pro (0.512033)
               

               
               ldo (0.485013)
               

               
               tbr (0.462535)
               

               
               tes (0.415628)
               

               
               ssp (0.406559)
               

               
               ste (0.405625)
               

               
               sme (0.305437)
               

               
               isp (0.300752)
               

               
               spl (0.286369)
               

               
               csk (0.281492)
               

               
               lyg (0.266205)
               

               
               ute (0.265569)
               

               
               sug (0.254582)
               

               
               thg (0.253582)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               cbl (0.229595)
               

               
               nms (0.213858)
               

               
               aor (0.195274)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               ret (0.128733)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

	173-292, - strand, RNAz p=0.537363
	373-484, - strand, RNAz p=0.813802
	525-643, - strand, RNAz p=0.729873

	136-1308, gnl\|bosTau2\|chr13 (54657285-54658445)
	136-1308, gnl\|Hg17\|chr14 (33974273-33973123)
	136-1308, gnl\|Mm7\|chr12 (52665826-52664677)

	ski (0.880411)
	kid (0.518941)
	pro (0.512033)
	ldo (0.485013)
	tbr (0.462535)
	tes (0.415628)
	ssp (0.406559)
	ste (0.405625)
	sme (0.305437)
	isp (0.300752)
	spl (0.286369)
	csk (0.281492)
	lyg (0.266205)
	ute (0.265569)
	sug (0.254582)
	thg (0.253582)
	cbe (0.239234)
	mgp (0.230681)
	cbl (0.229595)
	nms (0.213858)
	aor (0.195274)
	fty (0.17584)
	sin (0.174948)
	rec (0.17307)
	duo (0.172801)
	eye (0.170503)
	fhi (0.169578)
	cki (0.165235)
	nco (0.161734)
	mga (0.160205)
	bfe (0.149858)
	liv (0.146284)
	lin (0.145603)
	hyp (0.142837)
	lnt (0.142308)
	cst (0.140036)
	pla (0.133672)
	ret (0.128733)
	eep (0.122564)
	pgl (0.118483)
	jca (0.11396)
	cty (0.10408)
	jej (0.0989218)