Non-Coding RNA Search

Ss1.1-Ova1-OVR010033B09.5

Sequence:


               
               ACCCCTGAGCCAGGAGGAGTGAGAACCCTGACCCCTAACCCCACTGCGTCCAGCCAATAG
GAGTCCAGCCACCATGGCGGAGCTGCAGGAGGTGCAGATCACGGAGGAGAAACCGCTGTT
GCCAGGGCAGACACCCGAGGTGGCCAAGGTTATCCGAGACCCTCTGACTCCCAGGCCTGA
ATTCCAGAACTCCAGGCATCCCCCCACTTCTTGCCTTCCCAAATTCATGACCTCATTCTA
ACCCACACCCCTACTTTCTCCACATCTACCTGTGTTTCTCTCCCCATACACCACACCGAG
AGCCCAGGCTTTTGTCCTGTCACTACACTAACTTTCATCCTTTCCATGTCTCTTTTTGTC
AACCTCTTTCTGTCTTTGGTCTCTTTTGGTCTCTCTACCTACCTTTCTTTATCTGTATCT
GTCTCTCCGTCTGTGACCCTACGTGGCTGTGTGTCTCTGTGTGTATCTGTGTGTCTCTCT
CCAGGAGGCTGAGTTAGCTGCCCGAATCCTCCTGGACCAGGGACAGGTAACCAGCTTGGG
GCAGCCCCAGGTGGGAGGAGGGGCTCTCCCCAGGAAGGAGAGGGCCCCTACCCGGCTCTT
GGCTTTTCCATCTCTCCGCTTCCTCTCCTTTTCCAGTCCTCTCCTGTCCCCGTCGCTCCC
CTTCCCTTCCTTTCTCCTCCCTACGCAGAGTTCCCTGATGCTCTCCAATCTTTCATTATG
CTTTTCCACCCTCAAAATCATCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCCCTGAGCCAGGAGGAGTGAGAACCCTGACCCCTAACCCCACTGCGTCCAGCCAATAG
GAGTCCAGCCACCATGGCGGAGCTGCAGGAGGTGCAGATCACGGAGGAGAAACCGCTGTT
GCCAGGGCAGACACCCGAGGTGGCCAAGGTTATCCGAGACCCTCTGACTCCCAGGCCTGA
ATTCCAGAACTCCAGGCATCCCCCCACTTCTTGCCTTCCCAAATTCATGACCTCATTCTA
ACCCACACCCCTACTTTCTCCACATCTACCTGTGTTTCTCTCCCCATACACCACACCGAG
AGCCCAGGCTTTTGTCCTGTCACTACACTAACTTTCATCCTTTCCATGTCTCTTTTTGTC
AACCTCTTTCTGTCTTTGGTCTCTTTTGGTCTCTCTACCTACCTTTCTTTATCTGTATCT
GTCTCTCCGTCTGTGACCCTACGTGGCTGTGTGTCTCTGTGTGTATCTGTGTGTCTCTCT
CCAGGAGGCTGAGTTAGCTGCCCGAATCCTCCTGGACCAGGGACAGGTAACCAGCTTGGG
GCAGCCCCAGGTGGGAGGAGGGGCTCTCCCCAGGAAGGAGAGGGCCCCTACCCGGCTCTT
GGCTTTTCCATCTCTCCGCTTCCTCTCCTTTTCCAGTCCTCTCCTGTCCCCGTCGCTCCC
CTTCCCTTCCTTTCTCCTCCCTACGCAGAGTTCCCTGATGCTCTCCAATCTTTCATTATG
CTTTTCCACCCTCAAAATCATCCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               491-640, - strand, RNAz p=0.997897

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               491-640, - strand, RNAz p=0.997897

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               537-655, + strand, RNAmicro p=0.999989

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               537-655, + strand, RNAmicro p=0.999989

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               70-742, gnl|bosTau2|chr10 (15554127-15553451)
               

               
               70-742, gnl|Hg17|chr14 (20561318-20560658)
               

               
               70-742, gnl|Mm7|chr14 (47245224-47244595)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               70-742, gnl|bosTau2|chr10 (15554127-15553451)
               

               
               70-742, gnl|Hg17|chr14 (20561318-20560658)
               

               
               70-742, gnl|Mm7|chr14 (47245224-47244595)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pla (0.133672)
               

               
               jca (0.11396)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)
               

               
               jca (0.11396)

	70-742, gnl\|bosTau2\|chr10 (15554127-15553451)
	70-742, gnl\|Hg17\|chr14 (20561318-20560658)
	70-742, gnl\|Mm7\|chr14 (47245224-47244595)