Ss1.1-Ova1-OVR010033B12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTGGGCGCCTCCCGCCTCCGCCTGCAGCGCGCCGCCCGCCCCGCTTCCTCGTTCGCGTC CGCAGGGGTCCGTGTTTCCAGCCGCTTTCGCCATGGCTGCACTCACCCAGAACCCGCAGT TCAAGAAGCTGCAGACCTGGTACCACGAGCACCGCTCTGACCTCAACTTGCGCCGCCTTT TCGAAGGGGACAAGGACCGCTTCAACCACTTCAGCTTGAACCTCAACACCAACCATGGCC GTATTCTGTTGGATTACTCCAAGAATCTTGTGACGGAGGCTGTGATGCAGATGCTGGTGG ACCTGGCCAAGTCCAGGGGTGTGGAGGCTGCCCGGGAGCGCATGTTCAATGGTGAGAAGA TCAACTTCACCGAGGATCGGGCAGTGTTGCACGTGGCCCTGAGGAACCGGTCAAACACAC CCATTCTAGTGGACGGCAAGGATGTGATGCCAGAGGTCAACAGGGTCCTGGAGAAGATGA AGTCTTTCTGCAAGCGTGTCCGGAGTGGCGAATGGAAAGGGTACTCGGGCAAGTCCATCA CGGACGTCATCAACATCGGCATCGGCGGCTCTGACCTGGGACCCCTCATGGTGACGGAAG CCCTCAAGCCGTACTCTGCAGAAGGCCCCCGGGTCTGGTTCGTCTCCAACATTGATGGGA CCCACATTGCCAAAACGCTGGCCACCCTGAACCCCGAGTCGTCCCTGTTCATCATTGCCT CCAAGACCTTCACCACCCAGGAGACCATCACAAATGCAGAGACGGCGAAGGAGTGGTTTC TTCAGTCAGCCAAGGATCCCTCTGCAGTCGCAAAGCACTTTGTCGCCCTGTCTACCAACA CTACCAAAGTGAAGGAATTTGGAATTGATCCTCAAAACATGTTCGAGTTCTGGGATTGGG TGGGAGGCCGCTACTCGCTCTGGTCAGCCATCGGACTCTCCATTGCCCTGCACGTGGGGT TTGACAACTTCGAGCAGCTGCTCTCGGGGGCTCACTGGATGGACCAGCACTTCCGCACGA CACCCCTGGAGAAGAACGCCCCCGTCCTGCTGGCTCTGCTGGGTATCTGGTACATCAACT TCTTTGGGTGTGAGACGCACGCCATGCTGCCATATGACCAGTACCTGCACCGCTTTGCTG CCTACTTCCAGCAGGGTGACATGGAGTCCAACGGGAAGTACATCACCAAGTCCGGCACCC GTGTGGACCACCAGACGGGCCCCATTGTGTGGGGGGAGCCAGGGACCAATGGCCAGCATG CCTTCTACCAGCTCATCCACCAAGGTACCAAGATGATACCCTGTGACTTCCTTATCCCGG TCCAGACACAGCACCCGATACGGAAGGGTTTGCATCACAAGATCCTCCTGGCGAACTTCT TGGCCCAGACTGAGGCCCTAATGAAGGGGAAGTCGACGGAAGAGGCCCGGAAGGAGCTGC AGGCCGCTGGGAAGAGTCCAGAGGACTTTGAGAAACTGCTGCCCCACAAGGTCTTTGAAG GAAATCGCCCCACCAACTCTATTGTGTTCACCAAGCTCACGCCGTTCATCCTTGGAGCCT TGATTGCCATGTACGAGCACAAGATCTTCGTCCAGGGCGTCATCTGGGACATCAACAGCT TTGACCAGTGGGGAGTGGAGCTGGGAAAGCAGCTGGCTAAGAAAATTGAACCGGAGCTTG ATGGCAGCAGCCCAGTGACTTCTCATGATTCTTCCACCAATGGGCTGATCAACTTCATCA AGCAGGAGCGTGAGGCCAGAAGCCAATAAACTCGTGCCCCACTGCAGTCCCCACTGTGAC TGGTCCTTCTTGTCCCTTCTGCCCAGAGTCTGCACTGCATGGTCCTGCCCTCTGGTTTTG GGTTTGGACCATAAGACCTTTGGGGGAAGCTGGTCTGGAATTGCCACCCCTGCCCTCTCC ATGTTCATGCCCCCTCTGTTTTAAAGTTGGCTGAAGTGTTTCGGTGCAGCTGAATTTTCT GACCCATGTTCACTGTTCATATACCAGGTAGAAAAATAAAGATGCCATAAAGGAGAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTGGGCGCCTCCCGCCTCCGCCTGCAGCGCGCCGCCCGCCCCGCTTCCTCGTTCGCGTC CGCAGGGGTCCGTGTTTCCAGCCGCTTTCGCCATGGCTGCACTCACCCAGAACCCGCAGT TCAAGAAGCTGCAGACCTGGTACCACGAGCACCGCTCTGACCTCAACTTGCGCCGCCTTT TCGAAGGGGACAAGGACCGCTTCAACCACTTCAGCTTGAACCTCAACACCAACCATGGCC GTATTCTGTTGGATTACTCCAAGAATCTTGTGACGGAGGCTGTGATGCAGATGCTGGTGG ACCTGGCCAAGTCCAGGGGTGTGGAGGCTGCCCGGGAGCGCATGTTCAATGGTGAGAAGA TCAACTTCACCGAGGATCGGGCAGTGTTGCACGTGGCCCTGAGGAACCGGTCAAACACAC CCATTCTAGTGGACGGCAAGGATGTGATGCCAGAGGTCAACAGGGTCCTGGAGAAGATGA AGTCTTTCTGCAAGCGTGTCCGGAGTGGCGAATGGAAAGGGTACTCGGGCAAGTCCATCA CGGACGTCATCAACATCGGCATCGGCGGCTCTGACCTGGGACCCCTCATGGTGACGGAAG CCCTCAAGCCGTACTCTGCAGAAGGCCCCCGGGTCTGGTTCGTCTCCAACATTGATGGGA CCCACATTGCCAAAACGCTGGCCACCCTGAACCCCGAGTCGTCCCTGTTCATCATTGCCT CCAAGACCTTCACCACCCAGGAGACCATCACAAATGCAGAGACGGCGAAGGAGTGGTTTC TTCAGTCAGCCAAGGATCCCTCTGCAGTCGCAAAGCACTTTGTCGCCCTGTCTACCAACA CTACCAAAGTGAAGGAATTTGGAATTGATCCTCAAAACATGTTCGAGTTCTGGGATTGGG TGGGAGGCCGCTACTCGCTCTGGTCAGCCATCGGACTCTCCATTGCCCTGCACGTGGGGT TTGACAACTTCGAGCAGCTGCTCTCGGGGGCTCACTGGATGGACCAGCACTTCCGCACGA CACCCCTGGAGAAGAACGCCCCCGTCCTGCTGGCTCTGCTGGGTATCTGGTACATCAACT TCTTTGGGTGTGAGACGCACGCCATGCTGCCATATGACCAGTACCTGCACCGCTTTGCTG CCTACTTCCAGCAGGGTGACATGGAGTCCAACGGGAAGTACATCACCAAGTCCGGCACCC GTGTGGACCACCAGACGGGCCCCATTGTGTGGGGGGAGCCAGGGACCAATGGCCAGCATG CCTTCTACCAGCTCATCCACCAAGGTACCAAGATGATACCCTGTGACTTCCTTATCCCGG TCCAGACACAGCACCCGATACGGAAGGGTTTGCATCACAAGATCCTCCTGGCGAACTTCT TGGCCCAGACTGAGGCCCTAATGAAGGGGAAGTCGACGGAAGAGGCCCGGAAGGAGCTGC AGGCCGCTGGGAAGAGTCCAGAGGACTTTGAGAAACTGCTGCCCCACAAGGTCTTTGAAG GAAATCGCCCCACCAACTCTATTGTGTTCACCAAGCTCACGCCGTTCATCCTTGGAGCCT TGATTGCCATGTACGAGCACAAGATCTTCGTCCAGGGCGTCATCTGGGACATCAACAGCT TTGACCAGTGGGGAGTGGAGCTGGGAAAGCAGCTGGCTAAGAAAATTGAACCGGAGCTTG ATGGCAGCAGCCCAGTGACTTCTCATGATTCTTCCACCAATGGGCTGATCAACTTCATCA AGCAGGAGCGTGAGGCCAGAAGCCAATAAACTCGTGCCCCACTGCAGTCCCCACTGTGAC TGGTCCTTCTTGTCCCTTCTGCCCAGAGTCTGCACTGCATGGTCCTGCCCTCTGGTTTTG GGTTTGGACCATAAGACCTTTGGGGGAAGCTGGTCTGGAATTGCCACCCCTGCCCTCTCC ATGTTCATGCCCCCTCTGTTTTAAAGTTGGCTGAAGTGTTTCGGTGCAGCTGAATTTTCT GACCCATGTTCACTGTTCATATACCAGGTAGAAAAATAAAGATGCCATAAAGGAGAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1355-1473, + strand, RNAz p=0.87402 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1355-1473, + strand, RNAz p=0.87402 |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 17-214, gnl|bosTau2|chr18 (37977068-37977265) | |
| 17-214, gnl|Hg17|chr19 (39547937-39548133) | |
| 17-214, gnl|Mm7|chr7 (31117783-31117580) | |
| 370-494, gnl|bosTau2|chr18 (37980170-37980294) | |
| 370-494, gnl|canFam2|chr1 (120853221-120853075) | |
| 370-494, gnl|danRer3|chr13 (5360885-5360757) | |
| 370-494, gnl|dasNov1|scaffold_71598 (4996-5142) | |
| 370-494, gnl|echTel1|scaffold_218123 (2192-2307) | |
| 370-494, gnl|fr1|chrUn (259425607-259425474) | |
| 370-494, gnl|galGal2|chr11 (11258400-11258525) | |
| 370-494, gnl|hg17|chr19 (39551308-39551454) | |
| 370-494, gnl|Hg17|chr19 (39551323-39551447) | |
| 370-494, gnl|loxAfr1|scaffold_98264 (8046-7900) | |
| 370-494, gnl|mm7|chr7 (31114745-31114601) | |
| 370-494, gnl|Mm7|chr7 (31114730-31114606) | |
| 370-494, gnl|monDom2|scaffold_35 (1293312-1293162) | |
| 370-494, gnl|oryCun1|scaffold_166835 (5351-5496) | |
| 370-494, gnl|panTro1|chr20 (36103476-36103622) | |
| 370-494, gnl|rheMac2|chr19 (40930060-40930204) | |
| 370-494, gnl|rn3|chr1 (86761432-86761289) | |
| 370-494, gnl|tetNig1|chrUn_random (159015588-159015712) | |
| 370-494, gnl|xenTro1|scaffold_129 (1710032-1710156) | |
| 578-725, gnl|bosTau2|chr18 (37986937-37987084) | |
| 578-725, gnl|Hg17|chr19 (39560479-39560626) | |
| 578-725, gnl|Mm7|chr7 (31108249-31108102) | |
| 988-1155, gnl|bosTau2|chr18 (38000870-38001036) | |
| 988-1155, gnl|Hg17|chr19 (39576646-39576812) | |
| 988-1155, gnl|Mm7|chr7 (31095259-31095093) | |
| 1355-1493, gnl|bosTau2|chr18 (38004141-38004279) | |
| 1355-1493, gnl|Hg17|chr19 (39581945-39582083) | |
| 1355-1493, gnl|Mm7|chr7 (31091652-31091514) | |
| 1633-2035, gnl|bosTau2|chr18 (38004841-38005251) | |
| 1633-2035, gnl|canFam2|chrX (82059494-82059148) | |
| 1633-2035, gnl|dasNov1|scaffold_2901 (36567-36206) | |
| 1633-2035, gnl|echTel1|scaffold_319225 (123331-122987) | |
| 1633-2035, gnl|Hg17|chr19 (39582645-39583074) | |
| 1633-2035, gnl|hg17|chr3 (53014803-53015176) | |
| 1633-2035, gnl|loxAfr1|scaffold_11966 (21655-21289) | |
| 1633-2035, gnl|Mm7|chr7 (31090038-31089647) | |
| 1633-2035, gnl|oryCun1|scaffold_143624 (624-989) | |
| 1633-2035, gnl|panTro1|chr2 (54665036-54665409) | |
| 1633-2035, gnl|rheMac2|chr2 (83338826-83338462) | |
| 1633-2035, gnl|rn3|chr1 (86736969-86737301) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 17-214, gnl|bosTau2|chr18 (37977068-37977265) | |
| 17-214, gnl|Hg17|chr19 (39547937-39548133) | |
| 17-214, gnl|Mm7|chr7 (31117783-31117580) | |
| 370-494, gnl|bosTau2|chr18 (37980170-37980294) | |
| 370-494, gnl|canFam2|chr1 (120853221-120853075) | |
| 370-494, gnl|danRer3|chr13 (5360885-5360757) | |
| 370-494, gnl|dasNov1|scaffold_71598 (4996-5142) | |
| 370-494, gnl|echTel1|scaffold_218123 (2192-2307) | |
| 370-494, gnl|fr1|chrUn (259425607-259425474) | |
| 370-494, gnl|galGal2|chr11 (11258400-11258525) | |
| 370-494, gnl|hg17|chr19 (39551308-39551454) | |
| 370-494, gnl|Hg17|chr19 (39551323-39551447) | |
| 370-494, gnl|loxAfr1|scaffold_98264 (8046-7900) | |
| 370-494, gnl|mm7|chr7 (31114745-31114601) | |
| 370-494, gnl|Mm7|chr7 (31114730-31114606) | |
| 370-494, gnl|monDom2|scaffold_35 (1293312-1293162) | |
| 370-494, gnl|oryCun1|scaffold_166835 (5351-5496) | |
| 370-494, gnl|panTro1|chr20 (36103476-36103622) | |
| 370-494, gnl|rheMac2|chr19 (40930060-40930204) | |
| 370-494, gnl|rn3|chr1 (86761432-86761289) | |
| 370-494, gnl|tetNig1|chrUn_random (159015588-159015712) | |
| 370-494, gnl|xenTro1|scaffold_129 (1710032-1710156) | |
| 578-725, gnl|bosTau2|chr18 (37986937-37987084) | |
| 578-725, gnl|Hg17|chr19 (39560479-39560626) | |
| 578-725, gnl|Mm7|chr7 (31108249-31108102) | |
| 988-1155, gnl|bosTau2|chr18 (38000870-38001036) | |
| 988-1155, gnl|Hg17|chr19 (39576646-39576812) | |
| 988-1155, gnl|Mm7|chr7 (31095259-31095093) | |
| 1355-1493, gnl|bosTau2|chr18 (38004141-38004279) | |
| 1355-1493, gnl|Hg17|chr19 (39581945-39582083) | |
| 1355-1493, gnl|Mm7|chr7 (31091652-31091514) | |
| 1633-2035, gnl|bosTau2|chr18 (38004841-38005251) | |
| 1633-2035, gnl|canFam2|chrX (82059494-82059148) | |
| 1633-2035, gnl|dasNov1|scaffold_2901 (36567-36206) | |
| 1633-2035, gnl|echTel1|scaffold_319225 (123331-122987) | |
| 1633-2035, gnl|Hg17|chr19 (39582645-39583074) | |
| 1633-2035, gnl|hg17|chr3 (53014803-53015176) | |
| 1633-2035, gnl|loxAfr1|scaffold_11966 (21655-21289) | |
| 1633-2035, gnl|Mm7|chr7 (31090038-31089647) | |
| 1633-2035, gnl|oryCun1|scaffold_143624 (624-989) | |
| 1633-2035, gnl|panTro1|chr2 (54665036-54665409) | |
| 1633-2035, gnl|rheMac2|chr2 (83338826-83338462) | |
| 1633-2035, gnl|rn3|chr1 (86736969-86737301) |
| Expressed library(ies): 38 entry(ies) | More info |
| Expressed library(ies): 38 entry(ies) | Help | Less info |
| clu (1.5554) | |
| fce (1.08637) | |
| mas (0.84122) | |
| cov (0.792917) | |
| fcc (0.791139) | |
| nlu (0.766724) | |
| nms (0.641574) | |
| col (0.585023) | |
| cty (0.5204) | |
| fhi (0.508733) | |
| cag (0.453583) | |
| hyp (0.42851) | |
| lnt (0.426925) | |
| hlv (0.417769) | |
| amn (0.417711) | |
| nep (0.36785) | |
| nco (0.323468) | |
| pty (0.285429) | |
| che (0.272628) | |
| ste (0.270416) | |
| cly (0.241284) | |
| pgl (0.236967) | |
| med (0.232504) | |
| ece (0.229305) | |
| jca (0.22792) | |
| hea (0.204499) | |
| nbm (0.198649) | |
| eje (0.197668) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| cut (0.169924) | |
| cje (0.165235) | |
| ute (0.132784) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| jej (0.0989218) | |
| ldo (0.0970026) |
| Expressed library(ies): 38 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (1.5554) | |
| fce (1.08637) | |
| mas (0.84122) | |
| cov (0.792917) | |
| fcc (0.791139) | |
| nlu (0.766724) | |
| nms (0.641574) | |
| col (0.585023) | |
| cty (0.5204) | |
| fhi (0.508733) | |
| cag (0.453583) | |
| hyp (0.42851) | |
| lnt (0.426925) | |
| hlv (0.417769) | |
| amn (0.417711) | |
| nep (0.36785) | |
| nco (0.323468) | |
| pty (0.285429) | |
| che (0.272628) | |
| ste (0.270416) | |
| cly (0.241284) | |
| pgl (0.236967) | |
| med (0.232504) | |
| ece (0.229305) | |
| jca (0.22792) | |
| hea (0.204499) | |
| nbm (0.198649) | |
| eje (0.197668) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| cut (0.169924) | |
| cje (0.165235) | |
| ute (0.132784) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| jej (0.0989218) | |
| ldo (0.0970026) |