Non-Coding RNA Search

Ss1.1-Ova1-OVR010033C01.5

Sequence:


               
               GGGGCAGCCTCCCAGCTCTGCACTCACACGCCAGGTCAGGGGGACCCGCATGAGGACACC
CAGAGCCAGGCTGGGGGGCGGTATACATGAGGGGACATGGAAAGGGGAACAAGACAGTCT
GAGGGCGGAGGCTTCTGGCTGGAAGTCCCAGACCCCCAGTATGAAGGTAGGGGGTATCTC
AGGGACACAGGACCCCCAAGGGCCACCACAGCGTGCCCAGGAAGACAGCACACAGTCCAA
AAAAGGGGGTGAAACCAGCTCTAAGACGCAGCCTCTGTCCTGGGTCGCAGGGCACACGCA
CACACACGCGCACACACAAAAAAACGTAATGCCCCTGGGGCGAGGGACAGGGCCCCAGAG
ACCCCCACCCATGCCACATATTGGGAGGGGGTCAAGCAAGGACTGGAATGAAGCCCCTCG
AGTTATCACTTGGGGCAAGTTCTTTGTTTTTTTTCTCAAAAGGGAAATTTAAAAATCTAC
AACAAATCACACCAAATTCATTAAAAATGATAAAAATCCAGCCTCTCCCTCCTCGCGTAA
GCTCAGAAGGGGCCAAAAATGCTGACTGAGGAAGGGAAATGGAAGTGGCCCAGCCGGGGA
GTTTGGGGAGGCCCAGCCACCAACACATCTGGGAAGATGGGCTGGAACGGGGTGACCCCA
AGGGGAGGAGCATGTTTCCAAGGGAAAATTCTAAAAATAATAAAGGTATTTCAGCAGGTG
GTATGGGAGGTCTTGGCGCCAGGGAGACGGGGCTGCGGGAGCACCGCGGGGCCACCATCA
GCTGCGCTGTTCCAGGTATGCGGACAAGAGCAGCCCCGGGGGCAGGAAGTCCAGGTGCCG
ATTGCTGACCTTCATCTGCCGCTTACCCTCCAGGTCGGCACTGGCTGAGATGAGGTCCAT
GTACTGGCAGACAGCATGAAGCAGGAGCCTCTCAAAGCTGTTGTCCAGCATGGCCGTGTA
CACGGCCTGTGGAGACACAGAGAAGAACCTCAGCAGCCGCTCCTCCCAGGTCTCCAGGGT
TTCCATGGGGATGCGGCTTCGCTTGAGGATGGCTCGCAGACGCCGGCTGATGCGCTGGAA
GCACTCTCGGGGCGTGTAGGCTGGGTCCTCTCTCCGCCGGTCTTCTCCGCGGCCAGGCCC
CCTCCTCCGCGCCTTGCTTTTGCCCTCATCCTCCAGGTAGCGGAGAACCCGCTCCTGCTC
CTCCCCAGAGCGGTTCATGAAGTCGTTCCAGACCTCGATGTAGGTCTCATTGCTGCAGGC
CTCTGCGAAGATGCCGGGGGCCGCAGGGGGTGCCAGGTCCCCATCCTCCAGGCCAGGTGT
GCCTCCTTCGGTCTCCAGCAGGGTCAGGAGGTACTGGGTGTTCTCCAGGCGCTGGAGGCT
CTTCCGCCCCTTGGCCTTGGGCACGAGGTCTGAGTTCCGCACAGCCTGGTTGATGAAGTG
TTGCTTCCGCTTGGAGGCCGAGAGCCTCTTCACCTGGGAGCTGGCTAGAGCAGGCAGGCA
GCCCGGAAGGGGCAGCGTCCGCCGCCCGCCGGGGGAGACCCCCGCCGCCGCCGCCGCCAC
CTCCGGGCCGCCCTCCGGGTTCTCCAACGCTACCATAGCTCGGACACCCCGGTGCCTGCC
GCCGCCCGACAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGCAGCCTCCCAGCTCTGCACTCACACGCCAGGTCAGGGGGACCCGCATGAGGACACC
CAGAGCCAGGCTGGGGGGCGGTATACATGAGGGGACATGGAAAGGGGAACAAGACAGTCT
GAGGGCGGAGGCTTCTGGCTGGAAGTCCCAGACCCCCAGTATGAAGGTAGGGGGTATCTC
AGGGACACAGGACCCCCAAGGGCCACCACAGCGTGCCCAGGAAGACAGCACACAGTCCAA
AAAAGGGGGTGAAACCAGCTCTAAGACGCAGCCTCTGTCCTGGGTCGCAGGGCACACGCA
CACACACGCGCACACACAAAAAAACGTAATGCCCCTGGGGCGAGGGACAGGGCCCCAGAG
ACCCCCACCCATGCCACATATTGGGAGGGGGTCAAGCAAGGACTGGAATGAAGCCCCTCG
AGTTATCACTTGGGGCAAGTTCTTTGTTTTTTTTCTCAAAAGGGAAATTTAAAAATCTAC
AACAAATCACACCAAATTCATTAAAAATGATAAAAATCCAGCCTCTCCCTCCTCGCGTAA
GCTCAGAAGGGGCCAAAAATGCTGACTGAGGAAGGGAAATGGAAGTGGCCCAGCCGGGGA
GTTTGGGGAGGCCCAGCCACCAACACATCTGGGAAGATGGGCTGGAACGGGGTGACCCCA
AGGGGAGGAGCATGTTTCCAAGGGAAAATTCTAAAAATAATAAAGGTATTTCAGCAGGTG
GTATGGGAGGTCTTGGCGCCAGGGAGACGGGGCTGCGGGAGCACCGCGGGGCCACCATCA
GCTGCGCTGTTCCAGGTATGCGGACAAGAGCAGCCCCGGGGGCAGGAAGTCCAGGTGCCG
ATTGCTGACCTTCATCTGCCGCTTACCCTCCAGGTCGGCACTGGCTGAGATGAGGTCCAT
GTACTGGCAGACAGCATGAAGCAGGAGCCTCTCAAAGCTGTTGTCCAGCATGGCCGTGTA
CACGGCCTGTGGAGACACAGAGAAGAACCTCAGCAGCCGCTCCTCCCAGGTCTCCAGGGT
TTCCATGGGGATGCGGCTTCGCTTGAGGATGGCTCGCAGACGCCGGCTGATGCGCTGGAA
GCACTCTCGGGGCGTGTAGGCTGGGTCCTCTCTCCGCCGGTCTTCTCCGCGGCCAGGCCC
CCTCCTCCGCGCCTTGCTTTTGCCCTCATCCTCCAGGTAGCGGAGAACCCGCTCCTGCTC
CTCCCCAGAGCGGTTCATGAAGTCGTTCCAGACCTCGATGTAGGTCTCATTGCTGCAGGC
CTCTGCGAAGATGCCGGGGGCCGCAGGGGGTGCCAGGTCCCCATCCTCCAGGCCAGGTGT
GCCTCCTTCGGTCTCCAGCAGGGTCAGGAGGTACTGGGTGTTCTCCAGGCGCTGGAGGCT
CTTCCGCCCCTTGGCCTTGGGCACGAGGTCTGAGTTCCGCACAGCCTGGTTGATGAAGTG
TTGCTTCCGCTTGGAGGCCGAGAGCCTCTTCACCTGGGAGCTGGCTAGAGCAGGCAGGCA
GCCCGGAAGGGGCAGCGTCCGCCGCCCGCCGGGGGAGACCCCCGCCGCCGCCGCCGCCAC
CTCCGGGCCGCCCTCCGGGTTCTCCAACGCTACCATAGCTCGGACACCCCGGTGCCTGCC
GCCGCCCGACAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q96D70_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q96D70_HUMAN

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               83-219, - strand, RNAz p=0.991518
               

               
               330-440, - strand, RNAz p=0.617615
               

               
               1359-1477, - strand, RNAz p=0.848868

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               83-219, - strand, RNAz p=0.991518
               

               
               330-440, - strand, RNAz p=0.617615
               

               
               1359-1477, - strand, RNAz p=0.848868

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               5' of NM_138774, -
               

               
               5' of NM_138774, -

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_138774, -
               

               
               5' of NM_138774, -

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-598, gnl|bosTau2|chr7 (29263877-29263286)
               

               
               1-598, gnl|Hg17|chr19 (847576-848191)
               

               
               1-598, gnl|Mm7|chr10 (79690146-79690812)
               


               
               1110-1238, gnl|bosTau2|chr7 (29260824-29260696)
               

               
               1110-1238, gnl|Hg17|chr19 (851829-851957)
               

               
               1110-1238, gnl|Mm7|chr10 (79692665-79692790)
               


               
               1359-1513, gnl|bosTau2|chr7 (29259830-29259676)
               

               
               1359-1513, gnl|Hg17|chr19 (852976-853130)
               

               
               1359-1513, gnl|Mm7|chr10 (79693573-79693727)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-598, gnl|bosTau2|chr7 (29263877-29263286)
               

               
               1-598, gnl|Hg17|chr19 (847576-848191)
               

               
               1-598, gnl|Mm7|chr10 (79690146-79690812)
               


               
               1110-1238, gnl|bosTau2|chr7 (29260824-29260696)
               

               
               1110-1238, gnl|Hg17|chr19 (851829-851957)
               

               
               1110-1238, gnl|Mm7|chr10 (79692665-79692790)
               


               
               1359-1513, gnl|bosTau2|chr7 (29259830-29259676)
               

               
               1359-1513, gnl|Hg17|chr19 (852976-853130)
               

               
               1359-1513, gnl|Mm7|chr10 (79693573-79693727)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               hyp (0.285673)
               

               
               ece (0.229305)
               

               
               jej (0.197844)
               

               
               ill (0.175593)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.285673)
               

               
               ece (0.229305)
               

               
               jej (0.197844)
               

               
               ill (0.175593)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)

	83-219, - strand, RNAz p=0.991518
	330-440, - strand, RNAz p=0.617615
	1359-1477, - strand, RNAz p=0.848868

	1-598, gnl\|bosTau2\|chr7 (29263877-29263286)
	1-598, gnl\|Hg17\|chr19 (847576-848191)
	1-598, gnl\|Mm7\|chr10 (79690146-79690812)

	1110-1238, gnl\|bosTau2\|chr7 (29260824-29260696)
	1110-1238, gnl\|Hg17\|chr19 (851829-851957)
	1110-1238, gnl\|Mm7\|chr10 (79692665-79692790)

	1359-1513, gnl\|bosTau2\|chr7 (29259830-29259676)
	1359-1513, gnl\|Hg17\|chr19 (852976-853130)
	1359-1513, gnl\|Mm7\|chr10 (79693573-79693727)

	hyp (0.285673)
	ece (0.229305)
	jej (0.197844)
	ill (0.175593)
	nje (0.16592)
	csp (0.161186)
	eep (0.122564)
	cly (0.120642)
	ebs (0.118301)