Non-Coding RNA Search

Ss1.1-Ova1-OVR010033C03.5

Sequence:


               
               TTCGTAGCCCAACCCGTTCTCTCAGCAGGTCTCCCTGCTGACCTGTTCTGCCTTGGCTTC
CCCATGTGTGATGAGCAGGCGACCATATTAACTCTCAGGACTGCTTGGACAAGGCTCCTG
GTCAGTGTGCCCTGACCACTGGGTGGACAGGGAGTGAGAGTGAGTCTAGGGCCCTCCATG
AAACCTTTGTGGAGGTCAGTCTTCTGGCCTGATGTGGCCCCCAAGCCTGAGGCCGCCCAT
GCTTAGTGCCCCTGGCCTGCTTGGGAACTCCTCCCACCCCAGCTAAAGCACAACACTTTT
GCACCCGTCCCCGTTGCACCACACTCACCTTGACCGCTATTAGCATCTGCCCCCCCCCAT
CACTCTGCCTTCATTCAGCCACCTCTGTGACTCCCACCATGAAAGTCCTGGATACATGGT
GGACAGAAATTAAGCAAAGGGGGAGGGGGCTTCCTGGTCCTGGTGCCTCTCCCCAACCCA
TGCAGGTCTGCCCAGGAAGGGATTTTGGCTTCCAGGCCTCCCAAATTCTGGGTTTAAGGC
CTGGTCCCTGGTGAGATTCTTTCTCCACCCTGAGGCAGGGCTCTTCATTGCTCTCCATGC
TGGGCAGACCTCTCGCCAGCCCAGGCTTGGCCACGGGCCCTGGAGAGGGCCTGCTGGGTC
TTCCATGGCGGAAGACGCCAGACTCGGGCTAAGGAGAAGCCCAGAAACAGCTGTGACCTT
GGGCTGGAGTGGTGGGGCGGGATGCAGAGGGAGTCTCACCCCATCCCCTGCCTCCCATCG
GTGGCTCCGACATATGAAGACCTGGAGTGGGTTCCAGGTTCAGCAAAGAGCTGGTCTACA
CCCACTTCCTTCCTGTTCTGGAATCTGGAATTGCAGCACTGCCTCTGCCACTCAGGTGGT
CAAGGCTGTCTCCTTACCCTCCAGGCAGGGTCCCAGCTCCAGAGAGGCCCCTGGGAATGG
GGAGAATGTGGGGGCCATGGGAACTAGTGCCCAGTTTTGTCTCAGCTTCAGAGGCCCCTT
CCATCTCTGGCTGTGGGGTAACTTGGGGGGATGGGCTGGCCACGTGAGCAAGGCAGGGGC
TCCAGTCCAGCCTCAGCCGTGGGAGGCCTGCCTTGCCAACGCAGCTGTGCCTTCGAGGAC
AGACATGTCATGTGGGGGCAGAGGTCAGCAGTTAGCCACTGCCCCCCACCCCCATCAGGC
TGGCCAATTTGTCACCTTGCGTTTTCACTCTGTGTATTTCATATCTGATGGCAATACCCA
CAGGAGGCATGGTCTCCTGAAGTCCCTCCAGTCCTGATTTTTACAAAATTAAAGAGAAGG
GAGGACCCTCTCTCCCTTTGTCCAGCCTCCAGGCCTGCTGGCTGCCTTGATGAGCAGCTG
GACCCTGGGTTCAGCAGGCAGGGAGCGCTGTCTTCATACCACCACCCAGCCCAGAGCCAG
GATCCGTTTGTAGGTTTTTTTTTTCTTCAACAACTGAGCATTTCTGTACAGAATCCAATA
AAAACTTCCTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCGTAGCCCAACCCGTTCTCTCAGCAGGTCTCCCTGCTGACCTGTTCTGCCTTGGCTTC
CCCATGTGTGATGAGCAGGCGACCATATTAACTCTCAGGACTGCTTGGACAAGGCTCCTG
GTCAGTGTGCCCTGACCACTGGGTGGACAGGGAGTGAGAGTGAGTCTAGGGCCCTCCATG
AAACCTTTGTGGAGGTCAGTCTTCTGGCCTGATGTGGCCCCCAAGCCTGAGGCCGCCCAT
GCTTAGTGCCCCTGGCCTGCTTGGGAACTCCTCCCACCCCAGCTAAAGCACAACACTTTT
GCACCCGTCCCCGTTGCACCACACTCACCTTGACCGCTATTAGCATCTGCCCCCCCCCAT
CACTCTGCCTTCATTCAGCCACCTCTGTGACTCCCACCATGAAAGTCCTGGATACATGGT
GGACAGAAATTAAGCAAAGGGGGAGGGGGCTTCCTGGTCCTGGTGCCTCTCCCCAACCCA
TGCAGGTCTGCCCAGGAAGGGATTTTGGCTTCCAGGCCTCCCAAATTCTGGGTTTAAGGC
CTGGTCCCTGGTGAGATTCTTTCTCCACCCTGAGGCAGGGCTCTTCATTGCTCTCCATGC
TGGGCAGACCTCTCGCCAGCCCAGGCTTGGCCACGGGCCCTGGAGAGGGCCTGCTGGGTC
TTCCATGGCGGAAGACGCCAGACTCGGGCTAAGGAGAAGCCCAGAAACAGCTGTGACCTT
GGGCTGGAGTGGTGGGGCGGGATGCAGAGGGAGTCTCACCCCATCCCCTGCCTCCCATCG
GTGGCTCCGACATATGAAGACCTGGAGTGGGTTCCAGGTTCAGCAAAGAGCTGGTCTACA
CCCACTTCCTTCCTGTTCTGGAATCTGGAATTGCAGCACTGCCTCTGCCACTCAGGTGGT
CAAGGCTGTCTCCTTACCCTCCAGGCAGGGTCCCAGCTCCAGAGAGGCCCCTGGGAATGG
GGAGAATGTGGGGGCCATGGGAACTAGTGCCCAGTTTTGTCTCAGCTTCAGAGGCCCCTT
CCATCTCTGGCTGTGGGGTAACTTGGGGGGATGGGCTGGCCACGTGAGCAAGGCAGGGGC
TCCAGTCCAGCCTCAGCCGTGGGAGGCCTGCCTTGCCAACGCAGCTGTGCCTTCGAGGAC
AGACATGTCATGTGGGGGCAGAGGTCAGCAGTTAGCCACTGCCCCCCACCCCCATCAGGC
TGGCCAATTTGTCACCTTGCGTTTTCACTCTGTGTATTTCATATCTGATGGCAATACCCA
CAGGAGGCATGGTCTCCTGAAGTCCCTCCAGTCCTGATTTTTACAAAATTAAAGAGAAGG
GAGGACCCTCTCTCCCTTTGTCCAGCCTCCAGGCCTGCTGGCTGCCTTGATGAGCAGCTG
GACCCTGGGTTCAGCAGGCAGGGAGCGCTGTCTTCATACCACCACCCAGCCCAGAGCCAG
GATCCGTTTGTAGGTTTTTTTTTTCTTCAACAACTGAGCATTTCTGTACAGAATCCAATA
AAAACTTCCTAT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-228, - strand, RNAz p=0.732187
               

               
               478-949, - strand, RNAz p=0.999704

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-228, - strand, RNAz p=0.732187
               

               
               478-949, - strand, RNAz p=0.999704

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               635-770, - strand, RNAmicro p=0.999968

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               635-770, - strand, RNAmicro p=0.999968

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-949, gnl|bosTau2|chr16 (34905234-34906185)
               

               
               1-949, gnl|Hg17|chr1 (6243158-6242260)
               


               
               978-1328, gnl|bosTau2|chr16 (34906186-34906555)
               

               
               978-1328, gnl|Hg17|chr1 (6242259-6241867)
               

               
               978-1328, gnl|Mm7|chr4 (151274328-151274671)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-949, gnl|bosTau2|chr16 (34905234-34906185)
               

               
               1-949, gnl|Hg17|chr1 (6243158-6242260)
               


               
               978-1328, gnl|bosTau2|chr16 (34906186-34906555)
               

               
               978-1328, gnl|Hg17|chr1 (6242259-6241867)
               

               
               978-1328, gnl|Mm7|chr4 (151274328-151274671)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               eep (0.490256)
               

               
               amn (0.417711)
               

               
               cli (0.152812)
               

               
               nca (0.136874)
               

               
               ute (0.132784)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.490256)
               

               
               amn (0.417711)
               

               
               cli (0.152812)
               

               
               nca (0.136874)
               

               
               ute (0.132784)

	1-228, - strand, RNAz p=0.732187
	478-949, - strand, RNAz p=0.999704

	1-949, gnl\|bosTau2\|chr16 (34905234-34906185)
	1-949, gnl\|Hg17\|chr1 (6243158-6242260)

	978-1328, gnl\|bosTau2\|chr16 (34906186-34906555)
	978-1328, gnl\|Hg17\|chr1 (6242259-6241867)
	978-1328, gnl\|Mm7\|chr4 (151274328-151274671)

	eep (0.490256)
	amn (0.417711)
	cli (0.152812)
	nca (0.136874)
	ute (0.132784)