Non-Coding RNA Search

Ss1.1-Ova1-OVR010033D01.5

Sequence:


               
               ATCTTCTCGCTGCTCATGCCGCTGGGACTGGGGCGGCGGAAAAAAGCGCCGCCTCTGGTG
GAAAATGAGGAGGCCGAGCCAGGCCGTGGTGGGCTGGGCGTGGGGGAGCCGGGGCCCCTG
GGTGGAGGTGGGGTAGGGGGGCCCCAAATGGGCTTGCCCCCACCTCCCCCCGCCCTGCGG
CCCCGCCTCGTGTTCCACACCCAGCTGGCCCATGGCAGTCCCACTGGCCGCATCGAGGGC
TTCACCAACGTCAAGGAGCTGTATGGCAAGATTGCCGAGGCCTTCCGGCTGCCAGCTGCT
GAGGTGATGTTCTGCACCCTCAACACCCACAAAGTGGACATGGACAAGCTCCTTGGGGGT
CAGATCGGGCTGGAGGACTTCATCTTTGCCCACGTCAAGGGGCAGCGCAAGGAAGTGGAG
GTGTTCAAGTCGGAGGACGCACTGGGGCTCACCATCACAGACAACGGGGCTGGCTATGCC
TTCATCAAGCGCATTAAGGAAGGCAGCGTGATCGACCACATCCAGCTCATCAGCGTGGGT
GACATGATCGAGGCCATCAATGGACAGAGCCTGCTGGGCTGCCGGCACTACGAGGTGGCC
CGGCTGCTTAAGGAGCTGCCCCGAGGCCGCACTTTCACGTTAAAGCTCACAGAGCCCCGA
AAGGCCTTTGACATGATCAGCATCCGTTCAGGGGGCGGCCGCCCTAGCTCTGGCCCCCAG
ATGGGCACTGGCCGAGGGACCCTCCGGCTCCGATCCCGGGGCCCTGCCACAGTAGAGGAT
CTGCCTTCAGCCTTTGAGGAGAAGGCCATTGAGAAGGTAGATGACCTGCTGGAGAGTTAC
ATGGGCATCAGGGACACAGAGTTGGCGGCCACCATGGTGGAGCTTGGAAAGGACAAAAGG
AACCCAGATGAGCTGGCCGAGGCCCTGGATGAACGGCTTGGTGACTTCGCCTTCCCGGAT
GAGTTCGTCTTTGACGTCTGGGGGGCCATTGGGGACGCCAAGGTTGGCCGCTACTAGGCC
TCCCGCTGGACCTTGAGATGTCTTGGCCCAGACCCTGTGGGAGCCTCTGGGGTGGGGACA
CCATGGCCCGGACCCCACGGTCCGACTTGGGCCCAGCTCAGTAGCCCAAGGATGATGCGG
AGCGGAGGTGGGGCCAGGCCTCTGCCCCACTCCAATCGGTACCACCACCTCACCAGTTCC
CAGCCTGGCTGGGGTCCCCAGCACCCCCACCCCCGCCCCGTTCCCCACCTACCTCAGCAG
GGTCAGGCGCGAGGAGGGACCAGCCAGATCAGGCGCCCACCCCCGCCCCCAGTACTTTCC
GCATCAGCTGCCAAATTGGTCCCTCTATCTCCCTGGGGCCTCGGGTTCTGTTTGGGGGTC
ATGACCTCCCTAGTTTCCTGACGCAGGGAAGGCAGAAGGGGGGGTGTCTCCCCCACCTCA
GCAAATGCAATAATACCCTCCCCTTCCGCCCTGCCCCGCCCCTGGAGGAGCCCCCTCAGT
GTGGAGCCTGTTGCCTCCACATCTGAAAAATGTCTGCTGTGAACCCCCCAAACTCCCTCC
CTCCCCTGCCCCTTGTGTCTCCCTCAGAAGCCCAGGACAGAAGGGGAAGGAGGGATGATG
GCGGTGGGCTTTTGTATCTGAGTTTGCTGTCTGGAACATAAAGAATCTATCTGCTGTTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCTTCTCGCTGCTCATGCCGCTGGGACTGGGGCGGCGGAAAAAAGCGCCGCCTCTGGTG
GAAAATGAGGAGGCCGAGCCAGGCCGTGGTGGGCTGGGCGTGGGGGAGCCGGGGCCCCTG
GGTGGAGGTGGGGTAGGGGGGCCCCAAATGGGCTTGCCCCCACCTCCCCCCGCCCTGCGG
CCCCGCCTCGTGTTCCACACCCAGCTGGCCCATGGCAGTCCCACTGGCCGCATCGAGGGC
TTCACCAACGTCAAGGAGCTGTATGGCAAGATTGCCGAGGCCTTCCGGCTGCCAGCTGCT
GAGGTGATGTTCTGCACCCTCAACACCCACAAAGTGGACATGGACAAGCTCCTTGGGGGT
CAGATCGGGCTGGAGGACTTCATCTTTGCCCACGTCAAGGGGCAGCGCAAGGAAGTGGAG
GTGTTCAAGTCGGAGGACGCACTGGGGCTCACCATCACAGACAACGGGGCTGGCTATGCC
TTCATCAAGCGCATTAAGGAAGGCAGCGTGATCGACCACATCCAGCTCATCAGCGTGGGT
GACATGATCGAGGCCATCAATGGACAGAGCCTGCTGGGCTGCCGGCACTACGAGGTGGCC
CGGCTGCTTAAGGAGCTGCCCCGAGGCCGCACTTTCACGTTAAAGCTCACAGAGCCCCGA
AAGGCCTTTGACATGATCAGCATCCGTTCAGGGGGCGGCCGCCCTAGCTCTGGCCCCCAG
ATGGGCACTGGCCGAGGGACCCTCCGGCTCCGATCCCGGGGCCCTGCCACAGTAGAGGAT
CTGCCTTCAGCCTTTGAGGAGAAGGCCATTGAGAAGGTAGATGACCTGCTGGAGAGTTAC
ATGGGCATCAGGGACACAGAGTTGGCGGCCACCATGGTGGAGCTTGGAAAGGACAAAAGG
AACCCAGATGAGCTGGCCGAGGCCCTGGATGAACGGCTTGGTGACTTCGCCTTCCCGGAT
GAGTTCGTCTTTGACGTCTGGGGGGCCATTGGGGACGCCAAGGTTGGCCGCTACTAGGCC
TCCCGCTGGACCTTGAGATGTCTTGGCCCAGACCCTGTGGGAGCCTCTGGGGTGGGGACA
CCATGGCCCGGACCCCACGGTCCGACTTGGGCCCAGCTCAGTAGCCCAAGGATGATGCGG
AGCGGAGGTGGGGCCAGGCCTCTGCCCCACTCCAATCGGTACCACCACCTCACCAGTTCC
CAGCCTGGCTGGGGTCCCCAGCACCCCCACCCCCGCCCCGTTCCCCACCTACCTCAGCAG
GGTCAGGCGCGAGGAGGGACCAGCCAGATCAGGCGCCCACCCCCGCCCCCAGTACTTTCC
GCATCAGCTGCCAAATTGGTCCCTCTATCTCCCTGGGGCCTCGGGTTCTGTTTGGGGGTC
ATGACCTCCCTAGTTTCCTGACGCAGGGAAGGCAGAAGGGGGGGTGTCTCCCCCACCTCA
GCAAATGCAATAATACCCTCCCCTTCCGCCCTGCCCCGCCCCTGGAGGAGCCCCCTCAGT
GTGGAGCCTGTTGCCTCCACATCTGAAAAATGTCTGCTGTGAACCCCCCAAACTCCCTCC
CTCCCCTGCCCCTTGTGTCTCCCTCAGAAGCCCAGGACAGAAGGGGAAGGAGGGATGATG
GCGGTGGGCTTTTGTATCTGAGTTTGCTGTCTGGAACATAAAGAATCTATCTGCTGTTGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               GIPC_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               GIPC_HUMAN

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               1024-1318, - strand, RNAz p=0.971067
               

               
               1357-1651, - strand, RNAz p=0.99869

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1024-1318, - strand, RNAz p=0.971067
               

               
               1357-1651, - strand, RNAz p=0.99869

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               279-617, gnl|bosTau2|chr12 (27552649-27552314)
               


               
               670-783, gnl|bosTau2|chr7 (7391121-7391234)
               

               
               670-783, gnl|Hg17|chr19 (14451337-14451224)
               

               
               670-783, gnl|Mm7|chr8 (82241475-82241588)
               


               
               865-1680, gnl|bosTau2|chr7 (7391806-7392665)
               

               
               865-1680, gnl|Hg17|chr19 (14450380-14449572)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               279-617, gnl|bosTau2|chr12 (27552649-27552314)
               


               
               670-783, gnl|bosTau2|chr7 (7391121-7391234)
               

               
               670-783, gnl|Hg17|chr19 (14451337-14451224)
               

               
               670-783, gnl|Mm7|chr8 (82241475-82241588)
               


               
               865-1680, gnl|bosTau2|chr7 (7391806-7392665)
               

               
               865-1680, gnl|Hg17|chr19 (14450380-14449572)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               ebs (0.236602)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               eli (0.151814)
               

               
               pty (0.142714)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.236602)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               eli (0.151814)
               

               
               pty (0.142714)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

	1024-1318, - strand, RNAz p=0.971067
	1357-1651, - strand, RNAz p=0.99869

	279-617, gnl\|bosTau2\|chr12 (27552649-27552314)

	670-783, gnl\|bosTau2\|chr7 (7391121-7391234)
	670-783, gnl\|Hg17\|chr19 (14451337-14451224)
	670-783, gnl\|Mm7\|chr8 (82241475-82241588)

	865-1680, gnl\|bosTau2\|chr7 (7391806-7392665)
	865-1680, gnl\|Hg17\|chr19 (14450380-14449572)

	ebs (0.236602)
	col (0.195008)
	nlu (0.191681)
	ton (0.1755)
	mcp (0.170648)
	nco (0.161734)
	eli (0.151814)
	pty (0.142714)
	cov (0.132153)
	ese (0.126502)
	eep (0.122564)
	cty (0.10408)
	jej (0.0989218)