Non-Coding RNA Search

Ss1.1-Ova1-OVR010033F02.5

Sequence:


               
               CCCCGGGCTAGGTCCGCTCTAGCCCCGGGTGCCCCAACAGCCGCCAAAGCCCGAGCCTCC
CAGAAGCCGTGGGACCGGGGCCTCCCAGAAGCTGGGGTCTGGACGGGGGTCGCCATGATC
CGCTTCATCCTCATCCAGAACCGGGCAGGCAAGACGCGCCTGGCCAAGTGGTACATGCAG
TTTGATGATGACGAGAAACAGAAGCTGATTGAGGAAGTGCACGCCGTGGTCACTGTCCGA
GATGCCAAACACACCAACTTTGTGGAGTTCCGGAACTTCAAGATCATTTACCGACGCTAC
GCCGGCCTCTACTTCTGCATCTGCGTGGACGTCAACGACAACAACCTGGCCTACCTGGAG
GCCATCCACAACTTTGTGGAGGTCTTAAATGAGTATTTCCACAATGTCTGTGAACTGGAC
CTGGTGTTCAACTTCTACAAGGTTTACACGGTCGTGGACGAGATGTTCCTGGCCGGTGAG
ATCCGTGAGACCAGCCAGACGAAGGTGCTCAAACAGCTGCTGATGCTGCAGTCCCTGGAG
TGAGGGCGGCCGCCCGGCTTCTCACCCCTCCCCGGACCAGCCTGCTCCCTCCCCGTTCCC
AGGCCTGGCATCGTTGCCCCCTGCGGCTCCTCCCTCAGCTGCCCAGGAGGAAGGCACCCA
GCTGGGTCTGGGCCACAAGGGAGGAAGCCCCACCCCACGGCCCCTGGGCCCCAACTGCGG
GCAGAGGCCACTTCGCGTGTACCGAGTACCCGTGCCTGTTGTCATTGTGTGATGCTGTGA
GTGCGTGCGTGGAGCCCCCCAATAAATCTGTGGTCCCCGCCTGGCCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCGGGCTAGGTCCGCTCTAGCCCCGGGTGCCCCAACAGCCGCCAAAGCCCGAGCCTCC
CAGAAGCCGTGGGACCGGGGCCTCCCAGAAGCTGGGGTCTGGACGGGGGTCGCCATGATC
CGCTTCATCCTCATCCAGAACCGGGCAGGCAAGACGCGCCTGGCCAAGTGGTACATGCAG
TTTGATGATGACGAGAAACAGAAGCTGATTGAGGAAGTGCACGCCGTGGTCACTGTCCGA
GATGCCAAACACACCAACTTTGTGGAGTTCCGGAACTTCAAGATCATTTACCGACGCTAC
GCCGGCCTCTACTTCTGCATCTGCGTGGACGTCAACGACAACAACCTGGCCTACCTGGAG
GCCATCCACAACTTTGTGGAGGTCTTAAATGAGTATTTCCACAATGTCTGTGAACTGGAC
CTGGTGTTCAACTTCTACAAGGTTTACACGGTCGTGGACGAGATGTTCCTGGCCGGTGAG
ATCCGTGAGACCAGCCAGACGAAGGTGCTCAAACAGCTGCTGATGCTGCAGTCCCTGGAG
TGAGGGCGGCCGCCCGGCTTCTCACCCCTCCCCGGACCAGCCTGCTCCCTCCCCGTTCCC
AGGCCTGGCATCGTTGCCCCCTGCGGCTCCTCCCTCAGCTGCCCAGGAGGAAGGCACCCA
GCTGGGTCTGGGCCACAAGGGAGGAAGCCCCACCCCACGGCCCCTGGGCCCCAACTGCGG
GCAGAGGCCACTTCGCGTGTACCGAGTACCCGTGCCTGTTGTCATTGTGTGATGCTGTGA
GTGCGTGCGTGGAGCCCCCCAATAAATCTGTGGTCCCCGCCTGGCCTC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|13623469|gb|AAH06337.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13623469|gb|AAH06337.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               557-709, - strand, RNAz p=0.721608

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               557-709, - strand, RNAz p=0.721608

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               110-267, gnl|bosTau2|chr18 (46518459-46518303)
               

               
               110-267, gnl|Hg17|chr19 (52041246-52041090)
               

               
               110-267, gnl|Mm7|chr7 (14506190-14506343)
               


               
               440-828, gnl|bosTau2|chr18 (46511649-46511264)
               

               
               440-828, gnl|Hg17|chr19 (52033647-52033261)
               

               
               440-828, gnl|Mm7|chr7 (14512202-14512588)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               110-267, gnl|bosTau2|chr18 (46518459-46518303)
               

               
               110-267, gnl|Hg17|chr19 (52041246-52041090)
               

               
               110-267, gnl|Mm7|chr7 (14506190-14506343)
               


               
               440-828, gnl|bosTau2|chr18 (46511649-46511264)
               

               
               440-828, gnl|Hg17|chr19 (52033647-52033261)
               

               
               440-828, gnl|Mm7|chr7 (14512202-14512588)

Expressed library(ies): 26 entry(ies)

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Expressed library(ies): 26 entry(ies)

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               nep (0.36785)
               

               
               ebs (0.354904)
               

               
               med (0.348756)
               

               
               nje (0.33184)
               

               
               csp (0.322373)
               

               
               cag (0.302389)
               

               
               pty (0.285429)
               

               
               ese (0.253004)
               

               
               mas (0.210305)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

Expressed library(ies): 26 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.36785)
               

               
               ebs (0.354904)
               

               
               med (0.348756)
               

               
               nje (0.33184)
               

               
               csp (0.322373)
               

               
               cag (0.302389)
               

               
               pty (0.285429)
               

               
               ese (0.253004)
               

               
               mas (0.210305)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

	110-267, gnl\|bosTau2\|chr18 (46518459-46518303)
	110-267, gnl\|Hg17\|chr19 (52041246-52041090)
	110-267, gnl\|Mm7\|chr7 (14506190-14506343)

	440-828, gnl\|bosTau2\|chr18 (46511649-46511264)
	440-828, gnl\|Hg17\|chr19 (52033647-52033261)
	440-828, gnl\|Mm7\|chr7 (14512202-14512588)

	nep (0.36785)
	ebs (0.354904)
	med (0.348756)
	nje (0.33184)
	csp (0.322373)
	cag (0.302389)
	pty (0.285429)
	ese (0.253004)
	mas (0.210305)
	eje (0.197668)
	col (0.195008)
	fty (0.17584)
	ton (0.1755)
	eye (0.170503)
	fhi (0.169578)
	nco (0.161734)
	hyp (0.142837)
	hlv (0.139256)
	nca (0.136874)
	pla (0.133672)
	cov (0.132153)
	eep (0.122564)
	cly (0.120642)
	pgl (0.118483)
	jca (0.11396)
	nbm (0.0993246)