Ss1.1-Ova1-OVR010033F04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTATACCCCCACTGGAAATCCAATCTTCCGTAACCCCTGCACAGAACAGGTTTTGAAAC TTCTGGACAATTTGCTTGCCCTTATAAGAACTCACAATTCTTTATATGCACCAGAAATGC TAGCCAAACTAGGAGAACCTTTCAGCAAGGCTCTGGATATGATTGATGCGGAAAAATCTA CTATTTTAGGATTACCTCAACCTCTCCTGGACCTGAATGACTCTCCTGTCTACAAAACGA TCTTGGAAAAAATGCAGCGTTTCTTCTGCACCCTCTATGAAAACTGTTTCCACATCCTAG GGAAGGCAGGCCCTTCCATGCAGCAGGACTTCTACACCGTGGAGCAGCTGTCCACCCAGC TCCTCAGCTCTGCCTTTGTCAACTTGGACAATCTTCCTGACTACCGACTCAGACCCTTGC TTCGGGTCTTCGTGAAGCCTCTGGTGCTCGCCTGTACCCCCGAGTACTATGAAAGCCTGG TGTCGCCCATCGTTGGGCCTCTTTTCACCTACCTCCACATGAGGCTTTCCCAAAAATGGC AAATCATCAACCAGAGGAGCATGCTGTGTGAAGATGAGACAACAGATGAAAACCCAGAGT CTCAAGAGATGCTGGAGGAACAAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTATACCCCCACTGGAAATCCAATCTTCCGTAACCCCTGCACAGAACAGGTTTTGAAAC TTCTGGACAATTTGCTTGCCCTTATAAGAACTCACAATTCTTTATATGCACCAGAAATGC TAGCCAAACTAGGAGAACCTTTCAGCAAGGCTCTGGATATGATTGATGCGGAAAAATCTA CTATTTTAGGATTACCTCAACCTCTCCTGGACCTGAATGACTCTCCTGTCTACAAAACGA TCTTGGAAAAAATGCAGCGTTTCTTCTGCACCCTCTATGAAAACTGTTTCCACATCCTAG GGAAGGCAGGCCCTTCCATGCAGCAGGACTTCTACACCGTGGAGCAGCTGTCCACCCAGC TCCTCAGCTCTGCCTTTGTCAACTTGGACAATCTTCCTGACTACCGACTCAGACCCTTGC TTCGGGTCTTCGTGAAGCCTCTGGTGCTCGCCTGTACCCCCGAGTACTATGAAAGCCTGG TGTCGCCCATCGTTGGGCCTCTTTTCACCTACCTCCACATGAGGCTTTCCCAAAAATGGC AAATCATCAACCAGAGGAGCATGCTGTGTGAAGATGAGACAACAGATGAAAACCCAGAGT CTCAAGAGATGCTGGAGGAACAAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 331-423, + strand, RNAz p=0.514863 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 331-423, + strand, RNAz p=0.514863 |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 48-190, gnl|bosTau2|chr23 (17346581-17346440) | |
| 48-190, gnl|Hg17|chr6 (43609760-43609621) | |
| 48-190, gnl|Mm7|chr17 (44363094-44363223) | |
| 286-423, gnl|bosTau2|chr23 (17343976-17343839) | |
| 286-423, gnl|canFam2|chr12 (14993536-14993699) | |
| 286-423, gnl|danRer3|chr13 (44920928-44920771) | |
| 286-423, gnl|dasNov1|scaffold_4458 (56868-57029) | |
| 286-423, gnl|echTel1|scaffold_308664 (59200-59358) | |
| 286-423, gnl|fr1|chrUn (90627341-90627503) | |
| 286-423, gnl|galGal2|chr3 (27205972-27205809) | |
| 286-423, gnl|hg17|chr6 (43606390-43606558) | |
| 286-423, gnl|Hg17|chr6 (43606541-43606404) | |
| 286-423, gnl|loxAfr1|scaffold_7045 (7509-7670) | |
| 286-423, gnl|mm7|chr17 (44365420-44365258) | |
| 286-423, gnl|Mm7|chr17 (44365268-44365405) | |
| 286-423, gnl|monDom2|scaffold_0 (198010325-198010164) | |
| 286-423, gnl|oryCun1|scaffold_94417 (17456-17618) | |
| 286-423, gnl|panTro1|chr5 (44205868-44206036) | |
| 286-423, gnl|rheMac2|chr4 (43432948-43433116) | |
| 286-423, gnl|rn3|chr9 (10307227-10307382) | |
| 286-423, gnl|tetNig1|chr17 (5646715-5646558) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 48-190, gnl|bosTau2|chr23 (17346581-17346440) | |
| 48-190, gnl|Hg17|chr6 (43609760-43609621) | |
| 48-190, gnl|Mm7|chr17 (44363094-44363223) | |
| 286-423, gnl|bosTau2|chr23 (17343976-17343839) | |
| 286-423, gnl|canFam2|chr12 (14993536-14993699) | |
| 286-423, gnl|danRer3|chr13 (44920928-44920771) | |
| 286-423, gnl|dasNov1|scaffold_4458 (56868-57029) | |
| 286-423, gnl|echTel1|scaffold_308664 (59200-59358) | |
| 286-423, gnl|fr1|chrUn (90627341-90627503) | |
| 286-423, gnl|galGal2|chr3 (27205972-27205809) | |
| 286-423, gnl|hg17|chr6 (43606390-43606558) | |
| 286-423, gnl|Hg17|chr6 (43606541-43606404) | |
| 286-423, gnl|loxAfr1|scaffold_7045 (7509-7670) | |
| 286-423, gnl|mm7|chr17 (44365420-44365258) | |
| 286-423, gnl|Mm7|chr17 (44365268-44365405) | |
| 286-423, gnl|monDom2|scaffold_0 (198010325-198010164) | |
| 286-423, gnl|oryCun1|scaffold_94417 (17456-17618) | |
| 286-423, gnl|panTro1|chr5 (44205868-44206036) | |
| 286-423, gnl|rheMac2|chr4 (43432948-43433116) | |
| 286-423, gnl|rn3|chr9 (10307227-10307382) | |
| 286-423, gnl|tetNig1|chr17 (5646715-5646558) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| elu (0.385356) | |
| fce (0.271592) | |
| nlu (0.191681) | |
| eje (0.0988338) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| fce (0.271592) | |
| nlu (0.191681) | |
| eje (0.0988338) |