Non-Coding RNA Search

Ss1.1-Ova1-OVR010033G03.5

Sequence:


               
               CGCGCCCTCGCCGCTGCAGTTCGCCCGGCGTGTGAGTCCTGTGGTTCTAGGTTCTCAGTA
AGTCGGACGCATCGGAGCCGAAGTCGCTCAGGTTTCGAAGCCCTTGGCGTCACAGGCTCG
GCGACATGTCGATGCTGGCTGAGCGTCGGCGGAAGCAGAAGTGGGCTGTGGATCCGAGAA
ACACTGCATGGAGTAATGATGACTCCAAGTTTGGCCAGAGAATGCTAGAGAAGATGGGAT
GGTCTAAAGGAAAGGGTTTAGGGGCTCAGGAGCAAGGAGCCACAGATCATATCAAAGTTC
AAGTTAAAAACAACCACCTGGGACTTGGAGCTACGATCAATAATGAAGACAACTGGATTG
CTCATCAAGATGATTTTAACCAGCTTCTGGCTGCACTGAACACTTGCCATGGGCAGGAAA
CAGCAGACTCCTCAGACAACAAGGAAAAGAAATCTTTCAGCCTTGAAGAGAAGTCCAAAA
TCTCCAAAAACCGTGTTCATTATATGAAATTCACAAAAGGGAAGGATCTCTCATCTCGGA
GCAAAACAGATCTTGACTGCATTTTTGGAAAAAGGCAGAAGAAGAAGACTCCTGAGGAGA
CGTCCAGCCCTGCCACTCCAGAGGGGACTGAAACCACCACGACCACCAGTGCCTTCACCA
TCCATGAGTACTTTGCCAAGCGCATGGCAGAGCGAAAGAACAAGCTGCAGGACACCGCTG
AGGGGCCAGGTGTTTCAGAGACCCCCCTGCAGAGCAAAAGGGGAAAGAAGAGAAAGAAAG
AGGCGAAAGACAAAAGTGTGGAAAATGGCACCCAGCCCAAGGCCAAGAAGAAGAGAGCCC
GAGCTGAGTGGCAGCTCGGAGACCCTGGCAGGGACGAGAATTCTGGTGTCTCCGCTGAGG
ACAGAGAGGGTAGCAGGGAGGTACTCAGTGACCAGGACTTTCCCCTGAAGCCCAGAAGAA
GGAAAGAAAAGAAAAAGCTACCAAAGCCGGTTGAGGCAGCAGTGGCCGGTATGCTAGAGG
AAACGCCAGTGAAAAAGAAGAAGAAAAAGAAAGATTCTGAGTAAATCTCTGAGCCAGGGC
CTCCCGACCCCTCTGCCACCGGGGCTGCCGCGCCAGCTCCTCGGGCTCAGTCAGCAGGGC
TCCCAGGCGCACAGTCCCCGACATGCCCGGCCCCTGCCGTGTCTCGCCCTCGCCACATTG
TCCCACATCCCATTCCCAGAGCTGCTTAATGTTCCAAGTCATGGCTCTCATAAACAGTAC
ATTTCTTTTAGACTCTGAAACCTTCATGAACTGTGTTTCTTCATATTCGTGTGTGTGTGT
GCACGCACGTGTGTGAAGGTCCACCACAGTCTGCATTTGCTCTTTACTTCCTTTGGTAAC
AATGAACTGTGCTTCCTTCTGAAGGACTTCGTCTAATTAAAGGATTAAGAGGCAATAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCGCCCTCGCCGCTGCAGTTCGCCCGGCGTGTGAGTCCTGTGGTTCTAGGTTCTCAGTA
AGTCGGACGCATCGGAGCCGAAGTCGCTCAGGTTTCGAAGCCCTTGGCGTCACAGGCTCG
GCGACATGTCGATGCTGGCTGAGCGTCGGCGGAAGCAGAAGTGGGCTGTGGATCCGAGAA
ACACTGCATGGAGTAATGATGACTCCAAGTTTGGCCAGAGAATGCTAGAGAAGATGGGAT
GGTCTAAAGGAAAGGGTTTAGGGGCTCAGGAGCAAGGAGCCACAGATCATATCAAAGTTC
AAGTTAAAAACAACCACCTGGGACTTGGAGCTACGATCAATAATGAAGACAACTGGATTG
CTCATCAAGATGATTTTAACCAGCTTCTGGCTGCACTGAACACTTGCCATGGGCAGGAAA
CAGCAGACTCCTCAGACAACAAGGAAAAGAAATCTTTCAGCCTTGAAGAGAAGTCCAAAA
TCTCCAAAAACCGTGTTCATTATATGAAATTCACAAAAGGGAAGGATCTCTCATCTCGGA
GCAAAACAGATCTTGACTGCATTTTTGGAAAAAGGCAGAAGAAGAAGACTCCTGAGGAGA
CGTCCAGCCCTGCCACTCCAGAGGGGACTGAAACCACCACGACCACCAGTGCCTTCACCA
TCCATGAGTACTTTGCCAAGCGCATGGCAGAGCGAAAGAACAAGCTGCAGGACACCGCTG
AGGGGCCAGGTGTTTCAGAGACCCCCCTGCAGAGCAAAAGGGGAAAGAAGAGAAAGAAAG
AGGCGAAAGACAAAAGTGTGGAAAATGGCACCCAGCCCAAGGCCAAGAAGAAGAGAGCCC
GAGCTGAGTGGCAGCTCGGAGACCCTGGCAGGGACGAGAATTCTGGTGTCTCCGCTGAGG
ACAGAGAGGGTAGCAGGGAGGTACTCAGTGACCAGGACTTTCCCCTGAAGCCCAGAAGAA
GGAAAGAAAAGAAAAAGCTACCAAAGCCGGTTGAGGCAGCAGTGGCCGGTATGCTAGAGG
AAACGCCAGTGAAAAAGAAGAAGAAAAAGAAAGATTCTGAGTAAATCTCTGAGCCAGGGC
CTCCCGACCCCTCTGCCACCGGGGCTGCCGCGCCAGCTCCTCGGGCTCAGTCAGCAGGGC
TCCCAGGCGCACAGTCCCCGACATGCCCGGCCCCTGCCGTGTCTCGCCCTCGCCACATTG
TCCCACATCCCATTCCCAGAGCTGCTTAATGTTCCAAGTCATGGCTCTCATAAACAGTAC
ATTTCTTTTAGACTCTGAAACCTTCATGAACTGTGTTTCTTCATATTCGTGTGTGTGTGT
GCACGCACGTGTGTGAAGGTCCACCACAGTCTGCATTTGCTCTTTACTTCCTTTGGTAAC
AATGAACTGTGCTTCCTTCTGAAGGACTTCGTCTAATTAAAGGATTAAGAGGCAATAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|30908449|gb|AAP37006.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|30908449|gb|AAP37006.1|

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               255-612, gnl|bosTau2|chr5 (54794202-54793845)
               

               
               255-612, gnl|Hg17|chr6 (112754515-112754173)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               255-612, gnl|bosTau2|chr5 (54794202-54793845)
               

               
               255-612, gnl|Hg17|chr6 (112754515-112754173)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               clu (0.358938)
               

               
               eli (0.303628)
               

               
               ece (0.229305)
               

               
               tes (0.207814)
               

               
               mcp (0.170648)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.358938)
               

               
               eli (0.303628)
               

               
               ece (0.229305)
               

               
               tes (0.207814)
               

               
               mcp (0.170648)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

	255-612, gnl\|bosTau2\|chr5 (54794202-54793845)
	255-612, gnl\|Hg17\|chr6 (112754515-112754173)

	clu (0.358938)
	eli (0.303628)
	ece (0.229305)
	tes (0.207814)
	mcp (0.170648)
	cje (0.165235)
	nco (0.161734)
	nca (0.136874)
	ste (0.135208)
	ecc (0.115035)
	cty (0.10408)