Non-Coding RNA Search

Ss1.1-Ova1-OVR010034F02.5

Sequence:


               
               ATTGTGGGATTGGATGAGTCTCAAGATGGACAACCGGGATGTTGCAGGAAAGGCTAACCG
GTGGTTTGGGGTTGCCCCTGCCAAGTCTGGGAAAATGAACATGAACATCCTTCACCAGGA
GGAGCTCATTGCTCAGAAGAAACGGGAAATTGAAGCCAAAATGGAGCAGAAAGCCAAGCA
GAATCAGGTGGCCAGCCCTCAGCCCCCGAATCCTGGCGAAATTGCAAACGCACACAACTC
TAATGTCTCCAACAAGTTTGCCAACGACGGCAGCTTCTTGCAGCAGTTTCTGAAGTTGCA
AAAGGCACAGACCAGCACTGATCCGCCCCCCAGCGCGCCCATTGCCCCACCTCGTGTGCT
CCCCCGCCCTGGGAAGAGGCCACCCCTCATCAGCAGCCTGCCAGGCCAGGTGAAGAACTA
CGTGCATGCCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTGTGGGATTGGATGAGTCTCAAGATGGACAACCGGGATGTTGCAGGAAAGGCTAACCG
GTGGTTTGGGGTTGCCCCTGCCAAGTCTGGGAAAATGAACATGAACATCCTTCACCAGGA
GGAGCTCATTGCTCAGAAGAAACGGGAAATTGAAGCCAAAATGGAGCAGAAAGCCAAGCA
GAATCAGGTGGCCAGCCCTCAGCCCCCGAATCCTGGCGAAATTGCAAACGCACACAACTC
TAATGTCTCCAACAAGTTTGCCAACGACGGCAGCTTCTTGCAGCAGTTTCTGAAGTTGCA
AAAGGCACAGACCAGCACTGATCCGCCCCCCAGCGCGCCCATTGCCCCACCTCGTGTGCT
CCCCCGCCCTGGGAAGAGGCCACCCCTCATCAGCAGCCTGCCAGGCCAGGTGAAGAACTA
CGTGCATGCCAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61869654|ref|XP_588572.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61869654|ref|XP_588572.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               45-219, gnl|bosTau2|chr7 (4139394-4139568)
               

               
               45-219, gnl|Hg17|chr19 (19288405-19288231)
               

               
               45-219, gnl|Mm7|chr8 (68502896-68503070)
               


               
               320-432, gnl|bosTau2|chr7 (4144687-4144799)
               

               
               320-432, gnl|Hg17|chr19 (19277886-19277747)
               

               
               320-432, gnl|Mm7|chr8 (68511485-68511615)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               45-219, gnl|bosTau2|chr7 (4139394-4139568)
               

               
               45-219, gnl|Hg17|chr19 (19288405-19288231)
               

               
               45-219, gnl|Mm7|chr8 (68502896-68503070)
               


               
               320-432, gnl|bosTau2|chr7 (4144687-4144799)
               

               
               320-432, gnl|Hg17|chr19 (19277886-19277747)
               

               
               320-432, gnl|Mm7|chr8 (68511485-68511615)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               elu (0.385356)
               

               
               ill (0.175593)
               

               
               ebs (0.118301)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               ill (0.175593)
               

               
               ebs (0.118301)

	45-219, gnl\|bosTau2\|chr7 (4139394-4139568)
	45-219, gnl\|Hg17\|chr19 (19288405-19288231)
	45-219, gnl\|Mm7\|chr8 (68502896-68503070)

	320-432, gnl\|bosTau2\|chr7 (4144687-4144799)
	320-432, gnl\|Hg17\|chr19 (19277886-19277747)
	320-432, gnl\|Mm7\|chr8 (68511485-68511615)