Ss1.1-Ova1-OVR010034G09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCGGGCTCCGGAGCAGATATGGGCGCCGCCGCGTGGGCATCGTCGCCCCTGCCGCCACT TGTGTCTCTCCTGCTGCTACTTCTGCCGCTCCCGGGGCTGCCTGCGGTCTCCTGGGACCC GGCCGGTTATCTGCTCTACTGCCCATGCATGGGGCGCTTTGGGAACCAGGCTGATCATTT CTTGGGCTCCCTGGCATTTGCAAAGCTGTTGAACCGCACCCTGGCTGTACCTCCTTGGAT TGAGTACCAGCATCACAAGCCTCCTTTCACCAATCTCCATGTGTCCTACCAAAAGTACTT CAAGCTGGAGCCCCTCCAGGTCTACCACCGGGTCATCAGCCTGGAGGACTTCATGGAGAA GCTGGCACCCACCCACTGGCCCCCTGAGAGGCGGGTGGCATACTGTTTTGAGGTGGCAGC ACAGCGAAGCCCAGATAAGAAGACATGCCCCATGAAGGAAGGAAACCCCTTTGGCCCATT TTGGGATCAGTTTCATGTGAGTTTCAACAAGTCAGAACTTTTTGCAGGCATTTCCTTCAG TGCCTCCTACAAAGACCAGTGGATCCAAAGATTTTCTCCAAAGGAACATCCAGTGCTTGC CCTGCCAGGGGCCCCGGCTCAGTTCCCCGTCCTGGAGGAACATAGGCCACTTCAGAAATA CATGGTGTGGTCAGACGAGATGGTGAGGACAGGGGAGGCCCAGATCCGTGCCCACCTCAT CCGGCCCTACGTGGGCATTCACCTGCGCATTGGCTCTGACTGGAAGAACGCGTGCGCCAT GCTGAAGGACGGCACTGCCGGCGCTCACTTCATGGCCTCCCCGCAGTGCGTGGGTTACAG CCGCCACACCGCCGCCCCGCTCACCATGACCATGTGCCTCCCCGACCTGAAGGAGATCAG GCGCGCCCTGAAGCTCTGGGTGACGGCGCTGAGCGCCCAGTCCGTCTACATCGCCACGGA CTCTGAGAGTTACCTGCCGGAGATCCAGCAGCTCTTCAAAGGAAAGGTGAAGGTGGTGAG TCTGAAACCTGAGGTGGCCCAGATCGACCTGTACATCCTTGGCCAGGCTGACCACTTTAT TGGCAACTGTGTATCCTCCTTCACTGCCTTCGTGAAGCGGGAACGGGATCTCCAGGGGAG GCTGTCCTCCTTCTTCGGCATGGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCGGGCTCCGGAGCAGATATGGGCGCCGCCGCGTGGGCATCGTCGCCCCTGCCGCCACT TGTGTCTCTCCTGCTGCTACTTCTGCCGCTCCCGGGGCTGCCTGCGGTCTCCTGGGACCC GGCCGGTTATCTGCTCTACTGCCCATGCATGGGGCGCTTTGGGAACCAGGCTGATCATTT CTTGGGCTCCCTGGCATTTGCAAAGCTGTTGAACCGCACCCTGGCTGTACCTCCTTGGAT TGAGTACCAGCATCACAAGCCTCCTTTCACCAATCTCCATGTGTCCTACCAAAAGTACTT CAAGCTGGAGCCCCTCCAGGTCTACCACCGGGTCATCAGCCTGGAGGACTTCATGGAGAA GCTGGCACCCACCCACTGGCCCCCTGAGAGGCGGGTGGCATACTGTTTTGAGGTGGCAGC ACAGCGAAGCCCAGATAAGAAGACATGCCCCATGAAGGAAGGAAACCCCTTTGGCCCATT TTGGGATCAGTTTCATGTGAGTTTCAACAAGTCAGAACTTTTTGCAGGCATTTCCTTCAG TGCCTCCTACAAAGACCAGTGGATCCAAAGATTTTCTCCAAAGGAACATCCAGTGCTTGC CCTGCCAGGGGCCCCGGCTCAGTTCCCCGTCCTGGAGGAACATAGGCCACTTCAGAAATA CATGGTGTGGTCAGACGAGATGGTGAGGACAGGGGAGGCCCAGATCCGTGCCCACCTCAT CCGGCCCTACGTGGGCATTCACCTGCGCATTGGCTCTGACTGGAAGAACGCGTGCGCCAT GCTGAAGGACGGCACTGCCGGCGCTCACTTCATGGCCTCCCCGCAGTGCGTGGGTTACAG CCGCCACACCGCCGCCCCGCTCACCATGACCATGTGCCTCCCCGACCTGAAGGAGATCAG GCGCGCCCTGAAGCTCTGGGTGACGGCGCTGAGCGCCCAGTCCGTCTACATCGCCACGGA CTCTGAGAGTTACCTGCCGGAGATCCAGCAGCTCTTCAAAGGAAAGGTGAAGGTGGTGAG TCTGAAACCTGAGGTGGCCCAGATCGACCTGTACATCCTTGGCCAGGCTGACCACTTTAT TGGCAACTGTGTATCCTCCTTCACTGCCTTCGTGAAGCGGGAACGGGATCTCCAGGGGAG GCTGTCCTCCTTCTTCGGCATGGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 315-458, - strand, RNAz p=0.904703 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 315-458, - strand, RNAz p=0.904703 |
| Aligned organism(s): 49 entry(ies) | More info |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
| 152-273, gnl|bosTau2|chr13 (42332760-42332639) | |
| 152-273, gnl|canFam2|chr24 (24580197-24580331) | |
| 152-273, gnl|danRer3|chr15 (28132358-28132222) | |
| 152-273, gnl|fr1|chrUn (300033466-300033598) | |
| 152-273, gnl|galGal2|chr20 (9710379-9710508) | |
| 152-273, gnl|hg17|chr20 (30261529-30261665) | |
| 152-273, gnl|Hg17|chr20 (30261534-30261655) | |
| 152-273, gnl|mm7|chr2 (152984489-152984625) | |
| 152-273, gnl|Mm7|chr2 (152984494-152984615) | |
| 152-273, gnl|monDom2|scaffold_38 (848982-848846) | |
| 152-273, gnl|panTro1|chr21 (31957587-31957723) | |
| 152-273, gnl|rheMac2|chr10 (32366077-32365941) | |
| 152-273, gnl|rn3|chr3 (143499894-143500030) | |
| 152-273, gnl|tetNig1|chrUn_random (87202540-87202672) | |
| 152-273, gnl|xenTro1|scaffold_775 (53471-53603) | |
| 276-458, gnl|bosTau2|chr13 (42327825-42327643) | |
| 276-458, gnl|canFam2|chr24 (24585378-24585586) | |
| 276-458, gnl|danRer3|chr15 (28129785-28129564) | |
| 276-458, gnl|echTel1|scaffold_310271 (41889-42094) | |
| 276-458, gnl|fr1|chrUn (300033941-300034152) | |
| 276-458, gnl|galGal2|chr20 (9710598-9710797) | |
| 276-458, gnl|hg17|chr20 (30266717-30266919) | |
| 276-458, gnl|Hg17|chr20 (30266734-30266916) | |
| 276-458, gnl|loxAfr1|scaffold_24044 (36428-36220) | |
| 276-458, gnl|mm7|chr2 (152989290-152989492) | |
| 276-458, gnl|Mm7|chr2 (152989307-152989489) | |
| 276-458, gnl|monDom2|scaffold_38 (848141-847937) | |
| 276-458, gnl|oryCun1|scaffold_209602 (1585-1796) | |
| 276-458, gnl|panTro1|chr21 (31962943-31963145) | |
| 276-458, gnl|rheMac2|chr10 (32360603-32360401) | |
| 276-458, gnl|rn3|chr3 (143503696-143503898) | |
| 276-458, gnl|tetNig1|chrUn_random (87202866-87203067) | |
| 276-458, gnl|xenTro1|scaffold_775 (54047-54238) | |
| 763-1021, gnl|bosTau2|chr13 (42317449-42317191) | |
| 763-1021, gnl|canFam2|chr24 (24600338-24600615) | |
| 763-1021, gnl|danRer3|chr15 (28119657-28119391) | |
| 763-1021, gnl|dasNov1|scaffold_213834 (144-423) | |
| 763-1021, gnl|fr1|chrUn (300035154-300035424) | |
| 763-1021, gnl|galGal2|chr20 (9712560-9712827) | |
| 763-1021, gnl|hg17|chr20 (30282257-30282532) | |
| 763-1021, gnl|Hg17|chr20 (30282282-30282533) | |
| 763-1021, gnl|loxAfr1|scaffold_24044 (28185-27904) | |
| 763-1021, gnl|mm7|chr2 (153002026-153002304) | |
| 763-1021, gnl|Mm7|chr2 (153002054-153002305) | |
| 763-1021, gnl|monDom2|scaffold_38 (842488-842211) | |
| 763-1021, gnl|panTro1|chr21 (31978487-31978762) | |
| 763-1021, gnl|rn3|chr3 (143515658-143515938) | |
| 763-1021, gnl|tetNig1|chrUn_random (87203835-87204102) | |
| 763-1021, gnl|xenTro1|scaffold_775 (58193-58465) |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 152-273, gnl|bosTau2|chr13 (42332760-42332639) | |
| 152-273, gnl|canFam2|chr24 (24580197-24580331) | |
| 152-273, gnl|danRer3|chr15 (28132358-28132222) | |
| 152-273, gnl|fr1|chrUn (300033466-300033598) | |
| 152-273, gnl|galGal2|chr20 (9710379-9710508) | |
| 152-273, gnl|hg17|chr20 (30261529-30261665) | |
| 152-273, gnl|Hg17|chr20 (30261534-30261655) | |
| 152-273, gnl|mm7|chr2 (152984489-152984625) | |
| 152-273, gnl|Mm7|chr2 (152984494-152984615) | |
| 152-273, gnl|monDom2|scaffold_38 (848982-848846) | |
| 152-273, gnl|panTro1|chr21 (31957587-31957723) | |
| 152-273, gnl|rheMac2|chr10 (32366077-32365941) | |
| 152-273, gnl|rn3|chr3 (143499894-143500030) | |
| 152-273, gnl|tetNig1|chrUn_random (87202540-87202672) | |
| 152-273, gnl|xenTro1|scaffold_775 (53471-53603) | |
| 276-458, gnl|bosTau2|chr13 (42327825-42327643) | |
| 276-458, gnl|canFam2|chr24 (24585378-24585586) | |
| 276-458, gnl|danRer3|chr15 (28129785-28129564) | |
| 276-458, gnl|echTel1|scaffold_310271 (41889-42094) | |
| 276-458, gnl|fr1|chrUn (300033941-300034152) | |
| 276-458, gnl|galGal2|chr20 (9710598-9710797) | |
| 276-458, gnl|hg17|chr20 (30266717-30266919) | |
| 276-458, gnl|Hg17|chr20 (30266734-30266916) | |
| 276-458, gnl|loxAfr1|scaffold_24044 (36428-36220) | |
| 276-458, gnl|mm7|chr2 (152989290-152989492) | |
| 276-458, gnl|Mm7|chr2 (152989307-152989489) | |
| 276-458, gnl|monDom2|scaffold_38 (848141-847937) | |
| 276-458, gnl|oryCun1|scaffold_209602 (1585-1796) | |
| 276-458, gnl|panTro1|chr21 (31962943-31963145) | |
| 276-458, gnl|rheMac2|chr10 (32360603-32360401) | |
| 276-458, gnl|rn3|chr3 (143503696-143503898) | |
| 276-458, gnl|tetNig1|chrUn_random (87202866-87203067) | |
| 276-458, gnl|xenTro1|scaffold_775 (54047-54238) | |
| 763-1021, gnl|bosTau2|chr13 (42317449-42317191) | |
| 763-1021, gnl|canFam2|chr24 (24600338-24600615) | |
| 763-1021, gnl|danRer3|chr15 (28119657-28119391) | |
| 763-1021, gnl|dasNov1|scaffold_213834 (144-423) | |
| 763-1021, gnl|fr1|chrUn (300035154-300035424) | |
| 763-1021, gnl|galGal2|chr20 (9712560-9712827) | |
| 763-1021, gnl|hg17|chr20 (30282257-30282532) | |
| 763-1021, gnl|Hg17|chr20 (30282282-30282533) | |
| 763-1021, gnl|loxAfr1|scaffold_24044 (28185-27904) | |
| 763-1021, gnl|mm7|chr2 (153002026-153002304) | |
| 763-1021, gnl|Mm7|chr2 (153002054-153002305) | |
| 763-1021, gnl|monDom2|scaffold_38 (842488-842211) | |
| 763-1021, gnl|panTro1|chr21 (31978487-31978762) | |
| 763-1021, gnl|rn3|chr3 (143515658-143515938) | |
| 763-1021, gnl|tetNig1|chrUn_random (87203835-87204102) | |
| 763-1021, gnl|xenTro1|scaffold_775 (58193-58465) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nje (0.16592) | |
| cty (0.10408) |