Ss1.1-Ova1-OVR010035F01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACTTTCCAGAGCCAGCCAGGAGCGCGCACTCAGCGGCTCTCCGGGTCCCAGCCGCGCCCC GCTACCCCGCACCTCCTCCTCCTGCTCCTCTCCGGGTACCCCTCGCCCCCTCCTTCCAGC AGCTGCTACCTCGGGCGGCGGCTGCCCCCGAGCCTCTACTCAGCCACATCCCCAACTCTG GGCTCACTCCTGGGACGCGCGTCCTCGCCCCATCCTTTCTTCCTTCCTTCCCTCACGCCC GCCCGCCCTCTCCAGGTCTCCCTCCTGGGTCCCGATTGTCTCCGTCCCCTTCTCTGTCCG CCGGCGCCTAGCCCTGCCCCGTCCTCTCCCTCGCACTTCCTGAGTCGCCCGCCGCCGCAG TCTCGCCGCGGGACCCCGAGCCGGAGCCCCAGCCAAGCCGCCACAGCCCCGGCTCCAGCC CCCGCTGCCCGCGGCGCCCGGGGAAGGGAAAAGTGGGCGAGCTCGCCCTCGCCCAGCCCC GCGCCCCAACCCTGCCCGGCGAGGGAGGACCGGGAAGATGAACAACGGCGGCAAAGCCGA GAAGGAGAACACCCCGAACGAGGCCAACCTTCAGGAGGAAGAGGTCCGGACCCTATTTGT CAGTGGTCTCCCTCTGGACATTAAACCTCGGGAGCTGTATCTGCTTTTCAGACCGTTTAA GGGCTACGAAGGTTCTCTTATAAAGCTCACATCCAAGCAGCCCGTAGGTTTTGTCAGTTT TGACAGTCGCTCAGAAGCAGAAGCTGCCAAGAATGCTTTGAATGGCATCCGCTTCGATCC TGAAATTCCACAAACACTACGGCTAGAGTTTGCTAAGGCAAACACGAAGATGGCCAAGAA CAAACTAGTAGGGACGCCAAACCCTAGTACTCCTCTGCCCAACACTGTACCTCAGTTCAT TGCCAGAGAGCCATATGAGCTCACAGTGCCTGCACTTTACCCCAGTAGCCCTGAAGTGTG GGCCCCGTACCCTCTGTACCCAGCGGAGTTAGCGCCTGCTCTACCTCCTCCTGCTTTCAC CTATCCCGCTTCACTGCATGCCCAGATGCGCTGGCTCCCTCCGTCCGAGGCTACTTCTCA GGGCTGGAAGTCCCGTCAGTTCTGCTGAATACTGTGTTCCAGGTGTGTTGTAACATATCA ACCTACTGCAGACCAGCAGAGGGAGATCTTCAAGTGAATTTGCTCATTGAGCTGTTCTAC CCTCCACCCCCTCCAACCTTTGGCAAAAACTACTTCAGTTTTGACCCCTTCAAGACTTTG CCACAGCCTCTAATTAGAGCAAAATTTTCTCGAAGAAAAAATATAATAAAAAGTTTTACT AGACTTGAAGGCAGAAACAAGGGAATCAGAACTTCCCCTGCACCCAAAGGGCCTAAGAGA CTTTTTATTATCTGGAGGTAGAGTAGAGGGAAGGCCAGAGTGGATAATTCCGTTTTTGTT TTGGAAATCATTATGATTATGTCTTTGAAGATCAGCTCTTAAATAATTTTGCTTTTTCTT AGCAATGTTGTGCTCTGTTTTGAGACATGGATTTTTTTTTTCTTCTAGTGTTTCTCTCCT GAGGCAAAGCCCAACACACCTGTCTTTTGTCCACTTCTCCAGCAAATTAGATTTGTCTCT GGGAATGTGTTTGTAACATATCAACCTACTGCAGACCAGCAGAGGGAGCTCCCATGTTGA ATTTGCTCATTAGCTATTCCCCACCTCCACCCCCTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACTTTCCAGAGCCAGCCAGGAGCGCGCACTCAGCGGCTCTCCGGGTCCCAGCCGCGCCCC GCTACCCCGCACCTCCTCCTCCTGCTCCTCTCCGGGTACCCCTCGCCCCCTCCTTCCAGC AGCTGCTACCTCGGGCGGCGGCTGCCCCCGAGCCTCTACTCAGCCACATCCCCAACTCTG GGCTCACTCCTGGGACGCGCGTCCTCGCCCCATCCTTTCTTCCTTCCTTCCCTCACGCCC GCCCGCCCTCTCCAGGTCTCCCTCCTGGGTCCCGATTGTCTCCGTCCCCTTCTCTGTCCG CCGGCGCCTAGCCCTGCCCCGTCCTCTCCCTCGCACTTCCTGAGTCGCCCGCCGCCGCAG TCTCGCCGCGGGACCCCGAGCCGGAGCCCCAGCCAAGCCGCCACAGCCCCGGCTCCAGCC CCCGCTGCCCGCGGCGCCCGGGGAAGGGAAAAGTGGGCGAGCTCGCCCTCGCCCAGCCCC GCGCCCCAACCCTGCCCGGCGAGGGAGGACCGGGAAGATGAACAACGGCGGCAAAGCCGA GAAGGAGAACACCCCGAACGAGGCCAACCTTCAGGAGGAAGAGGTCCGGACCCTATTTGT CAGTGGTCTCCCTCTGGACATTAAACCTCGGGAGCTGTATCTGCTTTTCAGACCGTTTAA GGGCTACGAAGGTTCTCTTATAAAGCTCACATCCAAGCAGCCCGTAGGTTTTGTCAGTTT TGACAGTCGCTCAGAAGCAGAAGCTGCCAAGAATGCTTTGAATGGCATCCGCTTCGATCC TGAAATTCCACAAACACTACGGCTAGAGTTTGCTAAGGCAAACACGAAGATGGCCAAGAA CAAACTAGTAGGGACGCCAAACCCTAGTACTCCTCTGCCCAACACTGTACCTCAGTTCAT TGCCAGAGAGCCATATGAGCTCACAGTGCCTGCACTTTACCCCAGTAGCCCTGAAGTGTG GGCCCCGTACCCTCTGTACCCAGCGGAGTTAGCGCCTGCTCTACCTCCTCCTGCTTTCAC CTATCCCGCTTCACTGCATGCCCAGATGCGCTGGCTCCCTCCGTCCGAGGCTACTTCTCA GGGCTGGAAGTCCCGTCAGTTCTGCTGAATACTGTGTTCCAGGTGTGTTGTAACATATCA ACCTACTGCAGACCAGCAGAGGGAGATCTTCAAGTGAATTTGCTCATTGAGCTGTTCTAC CCTCCACCCCCTCCAACCTTTGGCAAAAACTACTTCAGTTTTGACCCCTTCAAGACTTTG CCACAGCCTCTAATTAGAGCAAAATTTTCTCGAAGAAAAAATATAATAAAAAGTTTTACT AGACTTGAAGGCAGAAACAAGGGAATCAGAACTTCCCCTGCACCCAAAGGGCCTAAGAGA CTTTTTATTATCTGGAGGTAGAGTAGAGGGAAGGCCAGAGTGGATAATTCCGTTTTTGTT TTGGAAATCATTATGATTATGTCTTTGAAGATCAGCTCTTAAATAATTTTGCTTTTTCTT AGCAATGTTGTGCTCTGTTTTGAGACATGGATTTTTTTTTTCTTCTAGTGTTTCTCTCCT GAGGCAAAGCCCAACACACCTGTCTTTTGTCCACTTCTCCAGCAAATTAGATTTGTCTCT GGGAATGTGTTTGTAACATATCAACCTACTGCAGACCAGCAGAGGGAGCTCCCATGTTGA ATTTGCTCATTAGCTATTCCCCACCTCCACCCCCTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 80-195, - strand, RNAz p=0.728353 | |
| 1461-1575, + strand, RNAz p=0.831154 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 80-195, - strand, RNAz p=0.728353 | |
| 1461-1575, + strand, RNAz p=0.831154 |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 1-378, gnl|bosTau2|chr27 (16195369-16195747) | |
| 1-378, gnl|Hg17|chr8 (30361592-30362061) | |
| 406-590, gnl|bosTau2|chr27 (16195720-16195904) | |
| 406-590, gnl|canFam2|chr16 (36916045-36915465) | |
| 406-590, gnl|echTel1|scaffold_322547 (185451-185018) | |
| 406-590, gnl|hg17|chr8 (30361724-30362354) | |
| 406-590, gnl|Hg17|chr8 (30361947-30362223) | |
| 406-590, gnl|loxAfr1|scaffold_12941 (2445-1909) | |
| 406-590, gnl|mm7|chr8 (32697606-32697272) | |
| 406-590, gnl|Mm7|chr8 (32697514-32697338) | |
| 406-590, gnl|panTro1|chr7 (31430629-31431262) | |
| 406-590, gnl|rheMac2|chr8 (30634202-30634820) | |
| 406-590, gnl|rn3|chr16 (62009792-62010111) | |
| 764-919, gnl|bosTau2|chr10 (30642463-30642308) | |
| 764-919, gnl|canFam2|chr30 (32163306-32163487) | |
| 764-919, gnl|danRer3|chr7 (39551281-39551457) | |
| 764-919, gnl|dasNov1|scaffold_272731 (1100-944) | |
| 764-919, gnl|echTel1|scaffold_158634 (9486-9669) | |
| 764-919, gnl|fr1|chrUn (5278364-5278545) | |
| 764-919, gnl|galGal2|chr10 (1554779-1554600) | |
| 764-919, gnl|hg17|chr15 (62828248-62828432) | |
| 764-919, gnl|Hg17|chr15 (62828402-62828247) | |
| 764-919, gnl|loxAfr1|scaffold_74216 (1377-1560) | |
| 764-919, gnl|mm7|chr9 (65680730-65680551) | |
| 764-919, gnl|Mm7|chr9 (65680574-65680729) | |
| 764-919, gnl|monDom2|scaffold_12 (48669129-48668951) | |
| 764-919, gnl|oryCun1|scaffold_139943 (2353-2497) | |
| 764-919, gnl|panTro1|chr16 (63295632-63295817) | |
| 764-919, gnl|rheMac2|chr7 (43206667-43206851) | |
| 764-919, gnl|rn3|chr8 (69928774-69928597) | |
| 764-919, gnl|tetNig1|chr5 (10777132-10776951) | |
| 764-919, gnl|xenTro1|scaffold_295 (598244-598420) | |
| 1321-1698, gnl|bosTau2|chr27 (16371256-16371647) | |
| 1321-1698, gnl|Hg17|chr8 (30524114-30524500) | |
| 1321-1698, gnl|Mm7|chr8 (32572242-32571908) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-378, gnl|bosTau2|chr27 (16195369-16195747) | |
| 1-378, gnl|Hg17|chr8 (30361592-30362061) | |
| 406-590, gnl|bosTau2|chr27 (16195720-16195904) | |
| 406-590, gnl|canFam2|chr16 (36916045-36915465) | |
| 406-590, gnl|echTel1|scaffold_322547 (185451-185018) | |
| 406-590, gnl|hg17|chr8 (30361724-30362354) | |
| 406-590, gnl|Hg17|chr8 (30361947-30362223) | |
| 406-590, gnl|loxAfr1|scaffold_12941 (2445-1909) | |
| 406-590, gnl|mm7|chr8 (32697606-32697272) | |
| 406-590, gnl|Mm7|chr8 (32697514-32697338) | |
| 406-590, gnl|panTro1|chr7 (31430629-31431262) | |
| 406-590, gnl|rheMac2|chr8 (30634202-30634820) | |
| 406-590, gnl|rn3|chr16 (62009792-62010111) | |
| 764-919, gnl|bosTau2|chr10 (30642463-30642308) | |
| 764-919, gnl|canFam2|chr30 (32163306-32163487) | |
| 764-919, gnl|danRer3|chr7 (39551281-39551457) | |
| 764-919, gnl|dasNov1|scaffold_272731 (1100-944) | |
| 764-919, gnl|echTel1|scaffold_158634 (9486-9669) | |
| 764-919, gnl|fr1|chrUn (5278364-5278545) | |
| 764-919, gnl|galGal2|chr10 (1554779-1554600) | |
| 764-919, gnl|hg17|chr15 (62828248-62828432) | |
| 764-919, gnl|Hg17|chr15 (62828402-62828247) | |
| 764-919, gnl|loxAfr1|scaffold_74216 (1377-1560) | |
| 764-919, gnl|mm7|chr9 (65680730-65680551) | |
| 764-919, gnl|Mm7|chr9 (65680574-65680729) | |
| 764-919, gnl|monDom2|scaffold_12 (48669129-48668951) | |
| 764-919, gnl|oryCun1|scaffold_139943 (2353-2497) | |
| 764-919, gnl|panTro1|chr16 (63295632-63295817) | |
| 764-919, gnl|rheMac2|chr7 (43206667-43206851) | |
| 764-919, gnl|rn3|chr8 (69928774-69928597) | |
| 764-919, gnl|tetNig1|chr5 (10777132-10776951) | |
| 764-919, gnl|xenTro1|scaffold_295 (598244-598420) | |
| 1321-1698, gnl|bosTau2|chr27 (16371256-16371647) | |
| 1321-1698, gnl|Hg17|chr8 (30524114-30524500) | |
| 1321-1698, gnl|Mm7|chr8 (32572242-32571908) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| hea (0.408998) | |
| elu (0.385356) | |
| hlv (0.278513) | |
| ute (0.265569) | |
| ece (0.229305) | |
| eje (0.197668) | |
| eye (0.170503) | |
| nje (0.16592) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| cst (0.140036) | |
| che (0.136314) | |
| pla (0.133672) | |
| bla (0.124347) | |
| eep (0.122564) | |
| cly (0.120642) | |
| jca (0.11396) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hea (0.408998) | |
| elu (0.385356) | |
| hlv (0.278513) | |
| ute (0.265569) | |
| ece (0.229305) | |
| eje (0.197668) | |
| eye (0.170503) | |
| nje (0.16592) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| cst (0.140036) | |
| che (0.136314) | |
| pla (0.133672) | |
| bla (0.124347) | |
| eep (0.122564) | |
| cly (0.120642) | |
| jca (0.11396) |