Non-Coding RNA Search

Ss1.1-Ova1-OVR010036H01.5

Sequence:


               
               ACGGCTGGGGGCTCCCGGCGCGGGGGACGCTGGTGGCCAAGATGGCGGCGGAGCTGGTGG
AGGCCAAAAACATGGTGATGAGTTTCCGAGTCTCCGATCTTCAGATGCTCCTGGGTTTTG
TCGGCCGGAGTAAGAGCGGACTCAAACACGAACTTGTCACCCGGGCCCTCCAGCTGGTTC
AGTTTGACTGTAGCCCTGAGCTATTCAAGAAGATCAAGGAGCTCTACGAGACGCGCTACG
CCAAGAAGAGCTCAGAACCCACACCCCAGCCCCACCGGCCCCTGGACCCCCTGGCCATGC
ACTCAGCCTATGACCGGGCCAGCTCGGTGCCCAGGACTCCCCTCACGGGCCCCAACATTG
ACTACCCCGTGCTCTACGGGAAGTACTTAAACGGACTCGGACGCTTACCTGCCAAGACCC
TCAAGCCGGAAGTGCGCCTGGTGAAGCTGCCCTTCTTTAACATGTTGGATGAATTGCTAA
AGCCCACAGAGCTGGTTCCACAGAATAACGAGAAGCTTCAAGAGAGCCCGTGCATCTTTG
CCTTGACGCCCAGACAGGTGGAGCTGATCCGGAACTCCAGAGAACTACAGCCCGGGGTCA
AGGCCGTGCAGGTCGTCCTAAGAATCTGCTATTCAGACACCAGCAGCCCTCAGGAAGACC
AGTACCCACCCAACATTGCCGTGAAGGTCAACCACAGCTACTGCTCTGTCCCGGGCTACT
ACCCCTCAAATAAGCCTGGAGTGGAGCCCAAGAGGCCGTGCCGCCCCATCAACCTCACCC
ACCTCATGTACCTGTCCTCGGCCACCAACCGCATCACTGTCACTTGGGGGAACTACGGCA
AGAGTTACTCTGTGGCCTTGTACTTGGTGCGGCAACTGACTTCCTCCGAGCTGCTGCAGA
GGTTGAAGACCATCGGGGTCAAGCACCCGGAGCTGTGCAAGGCGCTGGTCAAAGAGAAAC
TGCGCCTGGATCCCGACAGCGAGATCGCCACCACAGGCGTGCGGGTCTCCCTCATCTGCC
CGCTGGTGAAGATGCGGCTGTCCGTGCCCTGCCGTGCAGAGACTTGTGCGCACCTGCAGT
GCTTCGATGCTGTCTTCTACCTCCAGATGAACGAGAAAAAGCCCACTTGGATGTGCCCGG
TGTGTGACAAGCCGGCCCCCTATGACCAACTCATCATTGATGGGCTCCTCTCCAAGATCC
TGAGCGAGTGCGAGGATGCCGATGAGATCGAGTACCTGGTGGATGGCTCGTGGTGCCCAA
TCCGTGCCGAGAAGGAGCGCAGCTGCAGCCCGCAGTGCCCCATCCTTGTGCTTGGCACCT
CGGACGCCAATGGGCTCCTTTCTACCCCCAACGTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGGCTGGGGGCTCCCGGCGCGGGGGACGCTGGTGGCCAAGATGGCGGCGGAGCTGGTGG
AGGCCAAAAACATGGTGATGAGTTTCCGAGTCTCCGATCTTCAGATGCTCCTGGGTTTTG
TCGGCCGGAGTAAGAGCGGACTCAAACACGAACTTGTCACCCGGGCCCTCCAGCTGGTTC
AGTTTGACTGTAGCCCTGAGCTATTCAAGAAGATCAAGGAGCTCTACGAGACGCGCTACG
CCAAGAAGAGCTCAGAACCCACACCCCAGCCCCACCGGCCCCTGGACCCCCTGGCCATGC
ACTCAGCCTATGACCGGGCCAGCTCGGTGCCCAGGACTCCCCTCACGGGCCCCAACATTG
ACTACCCCGTGCTCTACGGGAAGTACTTAAACGGACTCGGACGCTTACCTGCCAAGACCC
TCAAGCCGGAAGTGCGCCTGGTGAAGCTGCCCTTCTTTAACATGTTGGATGAATTGCTAA
AGCCCACAGAGCTGGTTCCACAGAATAACGAGAAGCTTCAAGAGAGCCCGTGCATCTTTG
CCTTGACGCCCAGACAGGTGGAGCTGATCCGGAACTCCAGAGAACTACAGCCCGGGGTCA
AGGCCGTGCAGGTCGTCCTAAGAATCTGCTATTCAGACACCAGCAGCCCTCAGGAAGACC
AGTACCCACCCAACATTGCCGTGAAGGTCAACCACAGCTACTGCTCTGTCCCGGGCTACT
ACCCCTCAAATAAGCCTGGAGTGGAGCCCAAGAGGCCGTGCCGCCCCATCAACCTCACCC
ACCTCATGTACCTGTCCTCGGCCACCAACCGCATCACTGTCACTTGGGGGAACTACGGCA
AGAGTTACTCTGTGGCCTTGTACTTGGTGCGGCAACTGACTTCCTCCGAGCTGCTGCAGA
GGTTGAAGACCATCGGGGTCAAGCACCCGGAGCTGTGCAAGGCGCTGGTCAAAGAGAAAC
TGCGCCTGGATCCCGACAGCGAGATCGCCACCACAGGCGTGCGGGTCTCCCTCATCTGCC
CGCTGGTGAAGATGCGGCTGTCCGTGCCCTGCCGTGCAGAGACTTGTGCGCACCTGCAGT
GCTTCGATGCTGTCTTCTACCTCCAGATGAACGAGAAAAAGCCCACTTGGATGTGCCCGG
TGTGTGACAAGCCGGCCCCCTATGACCAACTCATCATTGATGGGCTCCTCTCCAAGATCC
TGAGCGAGTGCGAGGATGCCGATGAGATCGAGTACCTGGTGGATGGCTCGTGGTGCCCAA
TCCGTGCCGAGAAGGAGCGCAGCTGCAGCCCGCAGTGCCCCATCCTTGTGCTTGGCACCT
CGGACGCCAATGGGCTCCTTTCTACCCCCAACGTCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61870012|ref|XP_583589.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61870012|ref|XP_583589.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               64-495, gnl|bosTau2|chr7 (15762971-15763402)
               

               
               64-495, gnl|Hg17|chr19 (3963916-3964347)
               

               
               64-495, gnl|Mm7|chr10 (80956191-80955782)
               


               
               837-1261, gnl|bosTau2|chr16 (40859820-40859399)
               

               
               837-1261, gnl|Hg17|chr18 (42680673-42663751)
               

               
               837-1261, gnl|Mm7|chr18 (77408816-77415841)
               


               
               1005-1184, gnl|bosTau2|chr10 (9936404-9936226)
               

               
               1005-1184, gnl|Hg17|chr15 (66253110-66253285)
               

               
               1005-1184, gnl|Mm7|chr9 (62924359-62924185)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               64-495, gnl|bosTau2|chr7 (15762971-15763402)
               

               
               64-495, gnl|Hg17|chr19 (3963916-3964347)
               

               
               64-495, gnl|Mm7|chr10 (80956191-80955782)
               


               
               837-1261, gnl|bosTau2|chr16 (40859820-40859399)
               

               
               837-1261, gnl|Hg17|chr18 (42680673-42663751)
               

               
               837-1261, gnl|Mm7|chr18 (77408816-77415841)
               


               
               1005-1184, gnl|bosTau2|chr10 (9936404-9936226)
               

               
               1005-1184, gnl|Hg17|chr15 (66253110-66253285)
               

               
               1005-1184, gnl|Mm7|chr9 (62924359-62924185)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               col (0.390016)
               

               
               fli (0.202881)
               

               
               pty (0.142714)
               

               
               cov (0.132153)
               

               
               ecc (0.115035)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.390016)
               

               
               fli (0.202881)
               

               
               pty (0.142714)
               

               
               cov (0.132153)
               

               
               ecc (0.115035)

	64-495, gnl\|bosTau2\|chr7 (15762971-15763402)
	64-495, gnl\|Hg17\|chr19 (3963916-3964347)
	64-495, gnl\|Mm7\|chr10 (80956191-80955782)

	837-1261, gnl\|bosTau2\|chr16 (40859820-40859399)
	837-1261, gnl\|Hg17\|chr18 (42680673-42663751)
	837-1261, gnl\|Mm7\|chr18 (77408816-77415841)

	1005-1184, gnl\|bosTau2\|chr10 (9936404-9936226)
	1005-1184, gnl\|Hg17\|chr15 (66253110-66253285)
	1005-1184, gnl\|Mm7\|chr9 (62924359-62924185)

	col (0.390016)
	fli (0.202881)
	pty (0.142714)
	cov (0.132153)
	ecc (0.115035)