Non-Coding RNA Search

Ss1.1-Ova1-OVR010038E12.5

Sequence:


               
               ACACACATGAGCACAGAGCTGCCAAAAATTTCCACCCTCCGCCCCCCTCCCTAGCTAACT
TCCTTCCAGCATTTCCTGAGCTGGATGATCCTAGGATTTGTAAGACAGGAAAAAAAGGAA
GGCGTGAGGGCGGGCGAGAGAGACAGGATGCTTGTTTTTCGTTCTACCAAAGCCGTCTGA
AGGCAAGACAGCGCGCGCCGGGCAGAGGACCCACGCAGTCCCCGGGCCGTCTCCGCGCCC
GCCGCCGGCTTCCCCGCGCCCTCGGCCACTCCCGGGCTTCGAGAAGACGGACCGGAGAGC
TCGCCCTCCCTCCAAAGAGGAGGAAGACAACCGAAGACACCGCGGGAACCTGTGAAAGTC
CCTGGGACTCCAAGTGAGGAAGTGACACTCCCAGCGAGCCGGCCCGCCGCTGCCAGCTCC
GCACGGCCTGCGGCACCGCGGCCCTGGAGGAGCGCGCGGTGGATTTCAGGCTCCGCGCCC
GCGCCGGGCTCAGCGCCCCGCGGGCTCCATGCGCTCTGTCCCGGGCCCAAACTCTTCCCG
ACGCCCATGCGGCCCCACAGCGCCGCGCCGCAGCCACTGATCTAACCCCCACCCCGGAGA
CCACCGTCGGCGCGGTGCCAAGCAGAGGGGAGGGGGAGACGGAGGGCAACCTCTTTGGGA
CTAACTCATGAAGAACAAGGGTGCCAAGCAGAAGCTGAAACGAAAGGGAGCCGCCAGCGC
CTTTGGCTGTGACCTCACGGAGTATCTGGAAAGCTCAGGACAGGATGTTCCATATGTATT
GAAGAGCTGTGCAGAATTTATAGAGACTCACGGCATCGTGGATGGAATTTATCGGCTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACACACATGAGCACAGAGCTGCCAAAAATTTCCACCCTCCGCCCCCCTCCCTAGCTAACT
TCCTTCCAGCATTTCCTGAGCTGGATGATCCTAGGATTTGTAAGACAGGAAAAAAAGGAA
GGCGTGAGGGCGGGCGAGAGAGACAGGATGCTTGTTTTTCGTTCTACCAAAGCCGTCTGA
AGGCAAGACAGCGCGCGCCGGGCAGAGGACCCACGCAGTCCCCGGGCCGTCTCCGCGCCC
GCCGCCGGCTTCCCCGCGCCCTCGGCCACTCCCGGGCTTCGAGAAGACGGACCGGAGAGC
TCGCCCTCCCTCCAAAGAGGAGGAAGACAACCGAAGACACCGCGGGAACCTGTGAAAGTC
CCTGGGACTCCAAGTGAGGAAGTGACACTCCCAGCGAGCCGGCCCGCCGCTGCCAGCTCC
GCACGGCCTGCGGCACCGCGGCCCTGGAGGAGCGCGCGGTGGATTTCAGGCTCCGCGCCC
GCGCCGGGCTCAGCGCCCCGCGGGCTCCATGCGCTCTGTCCCGGGCCCAAACTCTTCCCG
ACGCCCATGCGGCCCCACAGCGCCGCGCCGCAGCCACTGATCTAACCCCCACCCCGGAGA
CCACCGTCGGCGCGGTGCCAAGCAGAGGGGAGGGGGAGACGGAGGGCAACCTCTTTGGGA
CTAACTCATGAAGAACAAGGGTGCCAAGCAGAAGCTGAAACGAAAGGGAGCCGCCAGCGC
CTTTGGCTGTGACCTCACGGAGTATCTGGAAAGCTCAGGACAGGATGTTCCATATGTATT
GAAGAGCTGTGCAGAATTTATAGAGACTCACGGCATCGTGGATGGAATTTATCGGCTTTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-159, + strand, RNAz p=0.951647

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-159, + strand, RNAz p=0.951647

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_020754, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_020754, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-767, gnl|bosTau2|chr1 (41030706-41031492)
               

               
               1-767, gnl|Hg17|chr3 (120495803-120496541)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-767, gnl|bosTau2|chr1 (41030706-41031492)
               

               
               1-767, gnl|Hg17|chr3 (120495803-120496541)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               spl (0.143184)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)

	1-767, gnl\|bosTau2\|chr1 (41030706-41031492)
	1-767, gnl\|Hg17\|chr3 (120495803-120496541)