Ss1.1-Ova1-OVR010039D04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTTTGGGCATTCTCGACAGCAGAGGAGTCTAGTGAAGCTTCTTGTGACCTTATCGGTTG AGGGCGGAAGCGAGGGCTGCGTTGCGTGGGCGGTGACGGAGGATTCTCCTGGACCCGCGT GGAAGCCGCTCTCAGGATGCTGCGCCGCGAGGCCCGCCTTCGCCGGGAGTACCTGTACCG CAAGGCGCGAGAGGAGGCTCAGCGAACCGCCCAGGAGAGGAAGGACAAGGTTCGGCGTGC GCTTGAAGAGAACCGCCTCATTCCCACGGAGTTACGCAGAGAGGCTCTGGCCTTACAGGG ATCCCTGGAGTTTGATGATGCCGGTGGTGAAGGTGTCACCAACCATATGGATGATGAGTA TCGATGGGCAGGGGTCGAGGATCCCAAAGTCATGATCACTACCTCTCGAGATCCCAGTTC CCGCCTCAAGATGTTTGCAAAGGAGCTGAAATTGGTGTTCCCGGGCGCCCAGCGCATGAA CCGAGGCCGGCACGAGGTCGGGGCGCTGGTGCGAGCCTGCAAAGCCAATGGGGTCACTGA CCTGCTGGTTGTCCATGAGCATCGAGGCACACCTGTGGGGCTCATTGTCAGCCACCTGCC CTTTGGCCCAACTGCGTACTTCACACTGTGCAACGTGGTTATGCGGCATGACATCCCCGA CCTGGGCACCGCGTCAGAGGCCAAGCCTCACCTCATCATGCATGGCTTTTCCTCCCGCCT GGGTAAGCGGGTCTCTGACATCCTCCGCTACCTATTCCCTGTGCCCAAAGATGACAGCCG CCGGGTCATCACCTTCGCCAACCAGGATGACTACATCTCCTTCCGGCACCATGTGTATAA GAAGACTGACCACCGCAACGTGGAGCTGACTGAGGTCGGGCCTCGCTTTGAGATGAAGTT GTACATGATCCGCTTGGGCACGCTGGAACAGGAGGCCACAGCAGACGTGGAGTGGCGCTG GCACCCCTACACCAACACTGCACACAAGAGGGTCTTCCTAAGCGCTGAGTGAGCCTCCTC ACCGGTCAGAACATGGACCTGATCGCCGACCTGGGAGCTGGGGAGGAGTGAGAATAAAAC CTGAATGTCAGAGCAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTTTGGGCATTCTCGACAGCAGAGGAGTCTAGTGAAGCTTCTTGTGACCTTATCGGTTG AGGGCGGAAGCGAGGGCTGCGTTGCGTGGGCGGTGACGGAGGATTCTCCTGGACCCGCGT GGAAGCCGCTCTCAGGATGCTGCGCCGCGAGGCCCGCCTTCGCCGGGAGTACCTGTACCG CAAGGCGCGAGAGGAGGCTCAGCGAACCGCCCAGGAGAGGAAGGACAAGGTTCGGCGTGC GCTTGAAGAGAACCGCCTCATTCCCACGGAGTTACGCAGAGAGGCTCTGGCCTTACAGGG ATCCCTGGAGTTTGATGATGCCGGTGGTGAAGGTGTCACCAACCATATGGATGATGAGTA TCGATGGGCAGGGGTCGAGGATCCCAAAGTCATGATCACTACCTCTCGAGATCCCAGTTC CCGCCTCAAGATGTTTGCAAAGGAGCTGAAATTGGTGTTCCCGGGCGCCCAGCGCATGAA CCGAGGCCGGCACGAGGTCGGGGCGCTGGTGCGAGCCTGCAAAGCCAATGGGGTCACTGA CCTGCTGGTTGTCCATGAGCATCGAGGCACACCTGTGGGGCTCATTGTCAGCCACCTGCC CTTTGGCCCAACTGCGTACTTCACACTGTGCAACGTGGTTATGCGGCATGACATCCCCGA CCTGGGCACCGCGTCAGAGGCCAAGCCTCACCTCATCATGCATGGCTTTTCCTCCCGCCT GGGTAAGCGGGTCTCTGACATCCTCCGCTACCTATTCCCTGTGCCCAAAGATGACAGCCG CCGGGTCATCACCTTCGCCAACCAGGATGACTACATCTCCTTCCGGCACCATGTGTATAA GAAGACTGACCACCGCAACGTGGAGCTGACTGAGGTCGGGCCTCGCTTTGAGATGAAGTT GTACATGATCCGCTTGGGCACGCTGGAACAGGAGGCCACAGCAGACGTGGAGTGGCGCTG GCACCCCTACACCAACACTGCACACAAGAGGGTCTTCCTAAGCGCTGAGTGAGCCTCCTC ACCGGTCAGAACATGGACCTGATCGCCGACCTGGGAGCTGGGGAGGAGTGAGAATAAAAC CTGAATGTCAGAGCAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 46 entry(ies) | More info |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
| 126-246, gnl|bosTau2|chr2 (522006-522126) | |
| 126-246, gnl|Hg17|chr2 (130816874-130816995) | |
| 126-246, gnl|Mm7|chr1 (34663257-34663371) | |
| 331-443, gnl|bosTau2|chr2 (524711-524823) | |
| 331-443, gnl|canFam2|chr25 (22006044-22005943) | |
| 331-443, gnl|canFam2|chrX (40846923-40847064) | |
| 331-443, gnl|dasNov1|scaffold_244153 (776-674) | |
| 331-443, gnl|dasNov1|scaffold_34005 (405-538) | |
| 331-443, gnl|echTel1|scaffold_170569 (10571-10469) | |
| 331-443, gnl|echTel1|scaffold_170569 (10427-10573) | |
| 331-443, gnl|fr1|chrUn (243486541-243486627) | |
| 331-443, gnl|hg17|chr2 (130819152-130819254) | |
| 331-443, gnl|Hg17|chr2 (130819177-130819289) | |
| 331-443, gnl|hg17|chrX (46938311-46938457) | |
| 331-443, gnl|mm7|chr1 (34666578-34666677) | |
| 331-443, gnl|mm7|chr1 (34666719-34666578) | |
| 331-443, gnl|Mm7|chr1 (34666600-34666712) | |
| 331-443, gnl|monDom2|scaffold_134 (484400-484296) | |
| 331-443, gnl|oryCun1|scaffold_165977 (15383-15484) | |
| 331-443, gnl|oryCun1|scaffold_165977 (15526-15396) | |
| 331-443, gnl|panTro1|chr13 (16976431-16976533) | |
| 331-443, gnl|panTro1|chrX (48519343-48519489) | |
| 331-443, gnl|rheMac2|chr13 (136738970-136739072) | |
| 331-443, gnl|rheMac2|chrX (45151423-45151569) | |
| 331-443, gnl|rn3|chr9 (33184387-33184486) | |
| 331-443, gnl|rn3|chr9 (33184528-33184399) | |
| 331-443, gnl|tetNig1|chrUn_random (20029735-20029651) | |
| 331-443, gnl|xenTro1|scaffold_18200 (3236-3134) | |
| 572-732, gnl|bosTau2|chr2 (525112-525272) | |
| 572-732, gnl|Hg17|chr2 (130819578-130819738) | |
| 572-732, gnl|Mm7|chr1 (34666989-34667149) | |
| 900-1082, gnl|bosTau2|chr2 (525730-525904) | |
| 900-1082, gnl|canFam2|chr25 (22005052-22004894) | |
| 900-1082, gnl|echTel1|scaffold_170569 (9560-9394) | |
| 900-1082, gnl|fr1|chrUn (243489465-243489593) | |
| 900-1082, gnl|hg17|chr2 (130820128-130820291) | |
| 900-1082, gnl|Hg17|chr2 (130820159-130820415) | |
| 900-1082, gnl|loxAfr1|scaffold_56463 (5280-5115) | |
| 900-1082, gnl|mm7|chr1 (34667549-34667714) | |
| 900-1082, gnl|Mm7|chr1 (34667582-34667736) | |
| 900-1082, gnl|monDom2|scaffold_134 (483339-483177) | |
| 900-1082, gnl|oryCun1|scaffold_181063 (4170-4333) | |
| 900-1082, gnl|panTro1|chr13 (16977406-16977569) | |
| 900-1082, gnl|rheMac2|chr13 (136739943-136740107) | |
| 900-1082, gnl|rn3|chr9 (33185334-33185499) | |
| 900-1082, gnl|tetNig1|chrUn_random (20028404-20028250) |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 126-246, gnl|bosTau2|chr2 (522006-522126) | |
| 126-246, gnl|Hg17|chr2 (130816874-130816995) | |
| 126-246, gnl|Mm7|chr1 (34663257-34663371) | |
| 331-443, gnl|bosTau2|chr2 (524711-524823) | |
| 331-443, gnl|canFam2|chr25 (22006044-22005943) | |
| 331-443, gnl|canFam2|chrX (40846923-40847064) | |
| 331-443, gnl|dasNov1|scaffold_244153 (776-674) | |
| 331-443, gnl|dasNov1|scaffold_34005 (405-538) | |
| 331-443, gnl|echTel1|scaffold_170569 (10571-10469) | |
| 331-443, gnl|echTel1|scaffold_170569 (10427-10573) | |
| 331-443, gnl|fr1|chrUn (243486541-243486627) | |
| 331-443, gnl|hg17|chr2 (130819152-130819254) | |
| 331-443, gnl|Hg17|chr2 (130819177-130819289) | |
| 331-443, gnl|hg17|chrX (46938311-46938457) | |
| 331-443, gnl|mm7|chr1 (34666578-34666677) | |
| 331-443, gnl|mm7|chr1 (34666719-34666578) | |
| 331-443, gnl|Mm7|chr1 (34666600-34666712) | |
| 331-443, gnl|monDom2|scaffold_134 (484400-484296) | |
| 331-443, gnl|oryCun1|scaffold_165977 (15383-15484) | |
| 331-443, gnl|oryCun1|scaffold_165977 (15526-15396) | |
| 331-443, gnl|panTro1|chr13 (16976431-16976533) | |
| 331-443, gnl|panTro1|chrX (48519343-48519489) | |
| 331-443, gnl|rheMac2|chr13 (136738970-136739072) | |
| 331-443, gnl|rheMac2|chrX (45151423-45151569) | |
| 331-443, gnl|rn3|chr9 (33184387-33184486) | |
| 331-443, gnl|rn3|chr9 (33184528-33184399) | |
| 331-443, gnl|tetNig1|chrUn_random (20029735-20029651) | |
| 331-443, gnl|xenTro1|scaffold_18200 (3236-3134) | |
| 572-732, gnl|bosTau2|chr2 (525112-525272) | |
| 572-732, gnl|Hg17|chr2 (130819578-130819738) | |
| 572-732, gnl|Mm7|chr1 (34666989-34667149) | |
| 900-1082, gnl|bosTau2|chr2 (525730-525904) | |
| 900-1082, gnl|canFam2|chr25 (22005052-22004894) | |
| 900-1082, gnl|echTel1|scaffold_170569 (9560-9394) | |
| 900-1082, gnl|fr1|chrUn (243489465-243489593) | |
| 900-1082, gnl|hg17|chr2 (130820128-130820291) | |
| 900-1082, gnl|Hg17|chr2 (130820159-130820415) | |
| 900-1082, gnl|loxAfr1|scaffold_56463 (5280-5115) | |
| 900-1082, gnl|mm7|chr1 (34667549-34667714) | |
| 900-1082, gnl|Mm7|chr1 (34667582-34667736) | |
| 900-1082, gnl|monDom2|scaffold_134 (483339-483177) | |
| 900-1082, gnl|oryCun1|scaffold_181063 (4170-4333) | |
| 900-1082, gnl|panTro1|chr13 (16977406-16977569) | |
| 900-1082, gnl|rheMac2|chr13 (136739943-136740107) | |
| 900-1082, gnl|rn3|chr9 (33185334-33185499) | |
| 900-1082, gnl|tetNig1|chrUn_random (20028404-20028250) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| nco (0.646935) | |
| nje (0.33184) | |
| ece (0.229305) | |
| jca (0.22792) | |
| jej (0.197844) | |
| nlu (0.191681) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| spl (0.143184) | |
| pty (0.142714) | |
| nca (0.136874) | |
| pla (0.133672) | |
| ute (0.132784) | |
| cov (0.132153) | |
| nbm (0.0993246) | |
| eje (0.0988338) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nco (0.646935) | |
| nje (0.33184) | |
| ece (0.229305) | |
| jca (0.22792) | |
| jej (0.197844) | |
| nlu (0.191681) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| spl (0.143184) | |
| pty (0.142714) | |
| nca (0.136874) | |
| pla (0.133672) | |
| ute (0.132784) | |
| cov (0.132153) | |
| nbm (0.0993246) | |
| eje (0.0988338) |