Non-Coding RNA Search

Ss1.1-Ova1-OVR010039F11.5

Sequence:


               
               CTCGGCCCACAGGGTCTCCCAGGACCCCGAGGGCCATCCACAGAAGAAGTGGGCCAGGTT
GCGGGTCAGGCCGCGGTCGAAGGGGTTGCCGGGGCGCTGGCGGAGGTAGGCGATGCGGTG
GGAAGAGATGAACTCCCAGGTGGTGGTGTTACTGGCCACCAGGTAGAGGTGTGAGGCCAA
GAGCAGGCCGGCCACCAGGGAGAAGAGGGACAGCAGCAGGAAGGTGGCCAACAGGAGCCC
GCTGGACCGCAGCCAGAGCCCCCAGGGCTGGAAGAAGCGGAGGCCAGACCATGCCAGGTA
CAGGCCCCACAGAAGCACCACCAGCTGCAGCGCCAGGTAGGCCACGAAGAGCGGGTGGTT
GCGCTCCCCCACGCAGTTCTCCATCCAGGGGCAGTGGTGGTCGTAGCGGCGGACACAGCG
CCGGCACTCACGGCAGTGCCGGGCCCGCAGGGGTTGCAGCACCATGCAGAATCTGCAGCG
CCGAAGGGGGATGGCCTGAGGAACCATGGCTGTCTGTTCTTCCTTGGCCTCCTCCTGGGG
CTGGGGAAGGACATTCACGTATCCTGGGTCCATGAGTGACACAGCCAGGTAAAGCAGCAG
GGAGCCCAGCACCAGGAGCAGGAAGGTGAGGGGCAGGAGCAGCTCCCCCTGCTCTTCCCA
CTGCCGCAGTGCGGTATCATGCAGGAACAGCACCAGCGTGATCCCCCAGGTCAGCACGGT
GTGCCCGGTCCGCACCAGGACCCCAGGGCTGAGGAGTTTTGGGAGTCAATTCCTAGGAAG
GGTTGGGCGGTGGGTAGGAGATGAGGCCGGATCTGGTGGGCACCGGGTGGGTCCGGTATC
ATGCAGGAACAGCACCAGCGTGATCCCCCAGGTCGGCACGGTGTGCCCGGTCCGCACCAG
GACCCCAGGGCTGAGGAGCGCCCAGGGCGCCATGGCCTCGGCCCGGGGCCCCACCCGGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCGGCCCACAGGGTCTCCCAGGACCCCGAGGGCCATCCACAGAAGAAGTGGGCCAGGTT
GCGGGTCAGGCCGCGGTCGAAGGGGTTGCCGGGGCGCTGGCGGAGGTAGGCGATGCGGTG
GGAAGAGATGAACTCCCAGGTGGTGGTGTTACTGGCCACCAGGTAGAGGTGTGAGGCCAA
GAGCAGGCCGGCCACCAGGGAGAAGAGGGACAGCAGCAGGAAGGTGGCCAACAGGAGCCC
GCTGGACCGCAGCCAGAGCCCCCAGGGCTGGAAGAAGCGGAGGCCAGACCATGCCAGGTA
CAGGCCCCACAGAAGCACCACCAGCTGCAGCGCCAGGTAGGCCACGAAGAGCGGGTGGTT
GCGCTCCCCCACGCAGTTCTCCATCCAGGGGCAGTGGTGGTCGTAGCGGCGGACACAGCG
CCGGCACTCACGGCAGTGCCGGGCCCGCAGGGGTTGCAGCACCATGCAGAATCTGCAGCG
CCGAAGGGGGATGGCCTGAGGAACCATGGCTGTCTGTTCTTCCTTGGCCTCCTCCTGGGG
CTGGGGAAGGACATTCACGTATCCTGGGTCCATGAGTGACACAGCCAGGTAAAGCAGCAG
GGAGCCCAGCACCAGGAGCAGGAAGGTGAGGGGCAGGAGCAGCTCCCCCTGCTCTTCCCA
CTGCCGCAGTGCGGTATCATGCAGGAACAGCACCAGCGTGATCCCCCAGGTCAGCACGGT
GTGCCCGGTCCGCACCAGGACCCCAGGGCTGAGGAGTTTTGGGAGTCAATTCCTAGGAAG
GGTTGGGCGGTGGGTAGGAGATGAGGCCGGATCTGGTGGGCACCGGGTGGGTCCGGTATC
ATGCAGGAACAGCACCAGCGTGATCCCCCAGGTCGGCACGGTGTGCCCGGTCCGCACCAG
GACCCCAGGGCTGAGGAGCGCCCAGGGCGCCATGGCCTCGGCCCGGGGCCCCACCCGGAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               ZDH12_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               ZDH12_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               80-199, + strand, RNAz p=0.684775

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-199, + strand, RNAz p=0.684775

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-290, gnl|bosTau2|chr11 (78515973-78516262)
               

               
               1-290, gnl|Hg17|chr9 (128563047-128563336)
               

               
               1-290, gnl|Mm7|chr2 (30098589-30098878)
               


               
               534-672, gnl|bosTau2|chr11 (78517169-78517307)
               

               
               534-672, gnl|Hg17|chr9 (128564270-128564408)
               

               
               534-672, gnl|Mm7|chr2 (30099715-30099853)
               


               
               833-960, gnl|bosTau2|chr11 (78518961-78519088)
               

               
               833-960, gnl|Hg17|chr9 (128565826-128565953)
               

               
               833-960, gnl|Mm7|chr2 (30100799-30100930)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-290, gnl|bosTau2|chr11 (78515973-78516262)
               

               
               1-290, gnl|Hg17|chr9 (128563047-128563336)
               

               
               1-290, gnl|Mm7|chr2 (30098589-30098878)
               


               
               534-672, gnl|bosTau2|chr11 (78517169-78517307)
               

               
               534-672, gnl|Hg17|chr9 (128564270-128564408)
               

               
               534-672, gnl|Mm7|chr2 (30099715-30099853)
               


               
               833-960, gnl|bosTau2|chr11 (78518961-78519088)
               

               
               833-960, gnl|Hg17|chr9 (128565826-128565953)
               

               
               833-960, gnl|Mm7|chr2 (30100799-30100930)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	1-290, gnl\|bosTau2\|chr11 (78515973-78516262)
	1-290, gnl\|Hg17\|chr9 (128563047-128563336)
	1-290, gnl\|Mm7\|chr2 (30098589-30098878)

	534-672, gnl\|bosTau2\|chr11 (78517169-78517307)
	534-672, gnl\|Hg17\|chr9 (128564270-128564408)
	534-672, gnl\|Mm7\|chr2 (30099715-30099853)

	833-960, gnl\|bosTau2\|chr11 (78518961-78519088)
	833-960, gnl\|Hg17\|chr9 (128565826-128565953)
	833-960, gnl\|Mm7\|chr2 (30100799-30100930)