Ss1.1-Ova1-OVR010039H08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AATAACTGCCCAGACCCTCGGGCCCCTGTCTAGGCCAGACCCGCCTCTAGGCAGCCCACG GAGAAGGCGCCCCTGGAAAAGGGAAACTGACATCCCATCAGGGTCCGCCCCTCCCCTGCC CTGCACGCGTCTCTTCTCTCAGCCACCGAAGTTCAGGGAGTCCCCCGCCGGCCTCCAGCG GTCCCGCCACCAAGACCCTCGGCTTTCGAGGAGCCGCCAGCTCCGACCCCGCGAAGATGG CGAGGAGGAGCCGCCACCGCCTCCTCCTGCTGCTGCTGCGCTACCTGGTGGTCGCCCTGG ACTATCATAAGGCCTGTGGATTCTCTGACCCAAAAGATCATCACGTAGTCACAGCAATAG AGTATCAAGAGGTTATTTTAGCCTGTAAATACCCAAAGAAGACCGTGTCCTCCAGATTAG AATGGAAGAAACTGGGGCGGGGTATCTCCTTTGTCTACTATCAACAGGCTCTTCAAGGTG CTTTTAAAGATCGAGCTGAGCTGATAGATTTCAGCATACGGATCAAAAATGTTACAAGAA ATGATGCCGGGAAGTATCGTTGTGAAATTAGTGCTCCATCCGAACAAGGTCAAAACCTGG CAGAGGATACGGTCACCCTGGAAGTATTAGTGGCTCCAGCAGTTCCATCATGTGAAGTAC CCAGTTCTGCTCTGAGCGGCACTACGGTAGAGCTGCGATGTCAAGACAAAGAAGGCAATC CAGCTCCCGAATACACATGGTTTAAGGATGGCATCCGTTTGTCAGGGAATCCAAGACTGG ATGCCCAAAGCACCAACAGCTCATATACAATGAATGTAAAATCTGGAAGTCTGCAATTTA ATGCTGTTTCAAAACTGGACAGTGGAGAATATTCCTGTGAAGCCCGTAATTCTGTCGGAC ATCGCAAGTGTCCTGGGAAACGAATGCAAGTAGACGATCTCAACATAAGTGGCATCATAG CGGCGGTAGTCGTCGTGGCCATAGTGATTTCTCTCTGTGGCCTTGGCGTGTGCTATGCTC AGAGGAAAGGCTACTTTTCAAAAGAAACCTCCTTCCAGAAGAGTGGTTCTGCATCTAAAG CCCCTACAATGAGTGAAAATGATTTCAAGCACACAAAATCCTTTATAATTTAAAAGGATC CCACCTTTGCGACACACCCAAACCACAGTTGTTGCACACAAGTTATTAAAAGATTATAAA ACTCAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AATAACTGCCCAGACCCTCGGGCCCCTGTCTAGGCCAGACCCGCCTCTAGGCAGCCCACG GAGAAGGCGCCCCTGGAAAAGGGAAACTGACATCCCATCAGGGTCCGCCCCTCCCCTGCC CTGCACGCGTCTCTTCTCTCAGCCACCGAAGTTCAGGGAGTCCCCCGCCGGCCTCCAGCG GTCCCGCCACCAAGACCCTCGGCTTTCGAGGAGCCGCCAGCTCCGACCCCGCGAAGATGG CGAGGAGGAGCCGCCACCGCCTCCTCCTGCTGCTGCTGCGCTACCTGGTGGTCGCCCTGG ACTATCATAAGGCCTGTGGATTCTCTGACCCAAAAGATCATCACGTAGTCACAGCAATAG AGTATCAAGAGGTTATTTTAGCCTGTAAATACCCAAAGAAGACCGTGTCCTCCAGATTAG AATGGAAGAAACTGGGGCGGGGTATCTCCTTTGTCTACTATCAACAGGCTCTTCAAGGTG CTTTTAAAGATCGAGCTGAGCTGATAGATTTCAGCATACGGATCAAAAATGTTACAAGAA ATGATGCCGGGAAGTATCGTTGTGAAATTAGTGCTCCATCCGAACAAGGTCAAAACCTGG CAGAGGATACGGTCACCCTGGAAGTATTAGTGGCTCCAGCAGTTCCATCATGTGAAGTAC CCAGTTCTGCTCTGAGCGGCACTACGGTAGAGCTGCGATGTCAAGACAAAGAAGGCAATC CAGCTCCCGAATACACATGGTTTAAGGATGGCATCCGTTTGTCAGGGAATCCAAGACTGG ATGCCCAAAGCACCAACAGCTCATATACAATGAATGTAAAATCTGGAAGTCTGCAATTTA ATGCTGTTTCAAAACTGGACAGTGGAGAATATTCCTGTGAAGCCCGTAATTCTGTCGGAC ATCGCAAGTGTCCTGGGAAACGAATGCAAGTAGACGATCTCAACATAAGTGGCATCATAG CGGCGGTAGTCGTCGTGGCCATAGTGATTTCTCTCTGTGGCCTTGGCGTGTGCTATGCTC AGAGGAAAGGCTACTTTTCAAAAGAAACCTCCTTCCAGAAGAGTGGTTCTGCATCTAAAG CCCCTACAATGAGTGAAAATGATTTCAAGCACACAAAATCCTTTATAATTTAAAAGGATC CCACCTTTGCGACACACCCAAACCACAGTTGTTGCACACAAGTTATTAAAAGATTATAAA ACTCAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 362-479, + strand, RNAz p=0.961665 | |
| 362-479, - strand, RNAz p=0.961665 | |
| 362-479, + strand, RNAz p=0.698513 | |
| 362-479, - strand, RNAz p=0.698513 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 362-479, + strand, RNAz p=0.961665 | |
| 362-479, - strand, RNAz p=0.961665 | |
| 362-479, + strand, RNAz p=0.698513 | |
| 362-479, - strand, RNAz p=0.698513 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 362-479, gnl|bosTau2|chr1 (7964035-7964152) | |
| 362-479, gnl|canFam2|chr31 (24197503-24197748) | |
| 362-479, gnl|echTel1|scaffold_286384 (59957-60194) | |
| 362-479, gnl|hg17|chr21 (25984019-25984263) | |
| 362-479, gnl|Hg17|chr21 (25984041-25984158) | |
| 362-479, gnl|loxAfr1|scaffold_15921 (43709-43465) | |
| 362-479, gnl|mm7|chr16 (84805384-84805643) | |
| 362-479, gnl|Mm7|chr16 (84805415-84805532) | |
| 362-479, gnl|monDom2|scaffold_29 (7609136-7608885) | |
| 362-479, gnl|oryCun1|scaffold_83985 (3370-3614) | |
| 362-479, gnl|panTro1|chr22 (25958541-25958785) | |
| 362-479, gnl|rheMac2|chr3 (20979613-20979367) | |
| 629-833, gnl|bosTau2|chr1 (7970374-7970578) | |
| 629-833, gnl|Hg17|chr21 (25992858-25993062) | |
| 629-833, gnl|Mm7|chr16 (84811485-84811686) | |
| 932-1041, gnl|bosTau2|chr1 (7975626-7975735) | |
| 932-1041, gnl|canFam2|chr31 (24209139-24209414) | |
| 932-1041, gnl|dasNov1|scaffold_35242 (5340-5095) | |
| 932-1041, gnl|echTel1|scaffold_315896 (43694-43424) | |
| 932-1041, gnl|hg17|chr21 (26000009-26000282) | |
| 932-1041, gnl|Hg17|chr21 (26000160-26000269) | |
| 932-1041, gnl|mm7|chr16 (84814708-84814974) | |
| 932-1041, gnl|Mm7|chr16 (84814852-84814961) | |
| 932-1041, gnl|monDom2|scaffold_29 (7574840-7574576) | |
| 932-1041, gnl|oryCun1|scaffold_215112 (45469-45196) | |
| 932-1041, gnl|panTro1|chr22 (25974835-25975108) | |
| 932-1041, gnl|rheMac2|chr3 (20964676-20964402) | |
| 1101-1202, gnl|bosTau2|chr1 (7985937-7986036) | |
| 1101-1202, gnl|canFam2|chr31 (24215434-24215692) | |
| 1101-1202, gnl|echTel1|scaffold_322002 (5164-4906) | |
| 1101-1202, gnl|hg17|chr21 (26008683-26008961) | |
| 1101-1202, gnl|Hg17|chr21 (26008823-26008922) | |
| 1101-1202, gnl|loxAfr1|scaffold_61949 (3756-3479) | |
| 1101-1202, gnl|mm7|chr16 (84821290-84821506) | |
| 1101-1202, gnl|Mm7|chr16 (84821375-84821470) | |
| 1101-1202, gnl|monDom2|scaffold_29 (7571588-7571303) | |
| 1101-1202, gnl|oryCun1|scaffold_215112 (38352-38102) | |
| 1101-1202, gnl|panTro1|chr22 (25983588-25983838) | |
| 1101-1202, gnl|rheMac2|chr3 (20956045-20955795) | |
| 1101-1202, gnl|rn3|chr11 (24311936-24312179) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 362-479, gnl|bosTau2|chr1 (7964035-7964152) | |
| 362-479, gnl|canFam2|chr31 (24197503-24197748) | |
| 362-479, gnl|echTel1|scaffold_286384 (59957-60194) | |
| 362-479, gnl|hg17|chr21 (25984019-25984263) | |
| 362-479, gnl|Hg17|chr21 (25984041-25984158) | |
| 362-479, gnl|loxAfr1|scaffold_15921 (43709-43465) | |
| 362-479, gnl|mm7|chr16 (84805384-84805643) | |
| 362-479, gnl|Mm7|chr16 (84805415-84805532) | |
| 362-479, gnl|monDom2|scaffold_29 (7609136-7608885) | |
| 362-479, gnl|oryCun1|scaffold_83985 (3370-3614) | |
| 362-479, gnl|panTro1|chr22 (25958541-25958785) | |
| 362-479, gnl|rheMac2|chr3 (20979613-20979367) | |
| 629-833, gnl|bosTau2|chr1 (7970374-7970578) | |
| 629-833, gnl|Hg17|chr21 (25992858-25993062) | |
| 629-833, gnl|Mm7|chr16 (84811485-84811686) | |
| 932-1041, gnl|bosTau2|chr1 (7975626-7975735) | |
| 932-1041, gnl|canFam2|chr31 (24209139-24209414) | |
| 932-1041, gnl|dasNov1|scaffold_35242 (5340-5095) | |
| 932-1041, gnl|echTel1|scaffold_315896 (43694-43424) | |
| 932-1041, gnl|hg17|chr21 (26000009-26000282) | |
| 932-1041, gnl|Hg17|chr21 (26000160-26000269) | |
| 932-1041, gnl|mm7|chr16 (84814708-84814974) | |
| 932-1041, gnl|Mm7|chr16 (84814852-84814961) | |
| 932-1041, gnl|monDom2|scaffold_29 (7574840-7574576) | |
| 932-1041, gnl|oryCun1|scaffold_215112 (45469-45196) | |
| 932-1041, gnl|panTro1|chr22 (25974835-25975108) | |
| 932-1041, gnl|rheMac2|chr3 (20964676-20964402) | |
| 1101-1202, gnl|bosTau2|chr1 (7985937-7986036) | |
| 1101-1202, gnl|canFam2|chr31 (24215434-24215692) | |
| 1101-1202, gnl|echTel1|scaffold_322002 (5164-4906) | |
| 1101-1202, gnl|hg17|chr21 (26008683-26008961) | |
| 1101-1202, gnl|Hg17|chr21 (26008823-26008922) | |
| 1101-1202, gnl|loxAfr1|scaffold_61949 (3756-3479) | |
| 1101-1202, gnl|mm7|chr16 (84821290-84821506) | |
| 1101-1202, gnl|Mm7|chr16 (84821375-84821470) | |
| 1101-1202, gnl|monDom2|scaffold_29 (7571588-7571303) | |
| 1101-1202, gnl|oryCun1|scaffold_215112 (38352-38102) | |
| 1101-1202, gnl|panTro1|chr22 (25983588-25983838) | |
| 1101-1202, gnl|rheMac2|chr3 (20956045-20955795) | |
| 1101-1202, gnl|rn3|chr11 (24311936-24312179) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| nca (0.273748) | |
| nmm (0.265604) | |
| col (0.195008) | |
| sin (0.174948) | |
| rec (0.17307) | |
| fat (0.147427) | |
| cov (0.132153) | |
| ova (0.129132) | |
| sug (0.127291) | |
| eru (0.120048) | |
| spc (0.113366) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nca (0.273748) | |
| nmm (0.265604) | |
| col (0.195008) | |
| sin (0.174948) | |
| rec (0.17307) | |
| fat (0.147427) | |
| cov (0.132153) | |
| ova (0.129132) | |
| sug (0.127291) | |
| eru (0.120048) | |
| spc (0.113366) |