Ss1.1-Ova1-OVR010039H12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTATTTTATTTTCTTCCCAAGAGAGGACCGCTTAGAGGAGGTCAAAGGGGAATTGTGTG ACACACAGAAGCCTTAGTTCCTTGAGAAGGCAGGAGAGTAGGAGAGGAAAGGGGGAGCAG TGAAGAAAGGGATGGAGATATTGGTATAGTGAGAAAAAAGCTGAGTAGTTTTAAGGAATC ATTTGGTGGCCATGGATCCAACGTACTCTTCTGAGAGCATTTATAACCTCATACCCAGTG GTCATTCTTCACTCCTTTTTCCCCAAAGGTACATATCAATTTTTAAGGCAACTGTAAAAG ATGACATGCAGAAATTTAAAACTGCAATGAAAACCATGGGACCAGCAAAACTTGAAGTAC CTTCTCCAAAGGATTTCTTGAAGAAACACTCTAAGGAAAAAACTCTACCACCCAAAAAAA AGTTTGATCGGCATGAGCCCAAAAAGCCTCCTGTGCCATTGAGAACTGAACATCCAGTCA TGGGAATACAGAGTGAAAAAAACTTTATAAATACAAATGCAGCCAATGTCATTATGGGAG TGGCTAAAAAGCCTAAACCAGTTTATGTTGACAAAAGAACTGGGGACAAGCATGACCTTG AAACTTCAGGACTAGTTCCAAAGTACATCAATAAAAAGGATTATGGTGTCACGCCTGAAT ATATATGTAAGCGAAATGAGGAAGTGAAGAAAGCCCAAGAAGAATATGATAACTATATCC AGGAAAACCTCAGGAAAGCAGCTATGAAAAGACTGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTATTTTATTTTCTTCCCAAGAGAGGACCGCTTAGAGGAGGTCAAAGGGGAATTGTGTG ACACACAGAAGCCTTAGTTCCTTGAGAAGGCAGGAGAGTAGGAGAGGAAAGGGGGAGCAG TGAAGAAAGGGATGGAGATATTGGTATAGTGAGAAAAAAGCTGAGTAGTTTTAAGGAATC ATTTGGTGGCCATGGATCCAACGTACTCTTCTGAGAGCATTTATAACCTCATACCCAGTG GTCATTCTTCACTCCTTTTTCCCCAAAGGTACATATCAATTTTTAAGGCAACTGTAAAAG ATGACATGCAGAAATTTAAAACTGCAATGAAAACCATGGGACCAGCAAAACTTGAAGTAC CTTCTCCAAAGGATTTCTTGAAGAAACACTCTAAGGAAAAAACTCTACCACCCAAAAAAA AGTTTGATCGGCATGAGCCCAAAAAGCCTCCTGTGCCATTGAGAACTGAACATCCAGTCA TGGGAATACAGAGTGAAAAAAACTTTATAAATACAAATGCAGCCAATGTCATTATGGGAG TGGCTAAAAAGCCTAAACCAGTTTATGTTGACAAAAGAACTGGGGACAAGCATGACCTTG AAACTTCAGGACTAGTTCCAAAGTACATCAATAAAAAGGATTATGGTGTCACGCCTGAAT ATATATGTAAGCGAAATGAGGAAGTGAAGAAAGCCCAAGAAGAATATGATAACTATATCC AGGAAAACCTCAGGAAAGCAGCTATGAAAAGACTGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 3-121, - strand, RNAz p=0.568573 | |
| 522-639, + strand, RNAz p=0.612841 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 3-121, - strand, RNAz p=0.568573 | |
| 522-639, + strand, RNAz p=0.612841 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 3-240, gnl|bosTau2|chr13 (14229989-14229757) | |
| 3-240, gnl|Hg17|chr10 (25345055-25344823) | |
| 3-240, gnl|Mm7|chr2 (21270484-21270259) | |
| 256-414, gnl|bosTau2|chr13 (14221197-14221039) | |
| 256-414, gnl|Hg17|chr10 (25328496-25328336) | |
| 256-414, gnl|Mm7|chr2 (21261967-21261809) | |
| 415-639, gnl|bosTau2|chr13 (14211087-14210863) | |
| 415-639, gnl|canFam2|chr2 (11400101-11399921) | |
| 415-639, gnl|danRer3|chrUn (102081035-102080878) | |
| 415-639, gnl|dasNov1|scaffold_28687 (4441-4623) | |
| 415-639, gnl|echTel1|scaffold_276334 (59052-59233) | |
| 415-639, gnl|fr1|chrUn (138193167-138193032) | |
| 415-639, gnl|galGal2|chr2 (16061065-16060882) | |
| 415-639, gnl|hg17|chr10 (25324552-25324734) | |
| 415-639, gnl|Hg17|chr10 (25324804-25324580) | |
| 415-639, gnl|loxAfr1|scaffold_66082 (189-371) | |
| 415-639, gnl|mm7|chr2 (21259409-21259587) | |
| 415-639, gnl|Mm7|chr2 (21259657-21259433) | |
| 415-639, gnl|monDom2|scaffold_7 (43537124-43536941) | |
| 415-639, gnl|oryCun1|scaffold_97225 (6851-7012) | |
| 415-639, gnl|panTro1|chr8_random (16931425-16931607) | |
| 415-639, gnl|rheMac2|chr9 (25181335-25181517) | |
| 415-639, gnl|rn3|chr17 (95201556-95201736) | |
| 415-639, gnl|tetNig1|chr6 (5689981-5689822) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-240, gnl|bosTau2|chr13 (14229989-14229757) | |
| 3-240, gnl|Hg17|chr10 (25345055-25344823) | |
| 3-240, gnl|Mm7|chr2 (21270484-21270259) | |
| 256-414, gnl|bosTau2|chr13 (14221197-14221039) | |
| 256-414, gnl|Hg17|chr10 (25328496-25328336) | |
| 256-414, gnl|Mm7|chr2 (21261967-21261809) | |
| 415-639, gnl|bosTau2|chr13 (14211087-14210863) | |
| 415-639, gnl|canFam2|chr2 (11400101-11399921) | |
| 415-639, gnl|danRer3|chrUn (102081035-102080878) | |
| 415-639, gnl|dasNov1|scaffold_28687 (4441-4623) | |
| 415-639, gnl|echTel1|scaffold_276334 (59052-59233) | |
| 415-639, gnl|fr1|chrUn (138193167-138193032) | |
| 415-639, gnl|galGal2|chr2 (16061065-16060882) | |
| 415-639, gnl|hg17|chr10 (25324552-25324734) | |
| 415-639, gnl|Hg17|chr10 (25324804-25324580) | |
| 415-639, gnl|loxAfr1|scaffold_66082 (189-371) | |
| 415-639, gnl|mm7|chr2 (21259409-21259587) | |
| 415-639, gnl|Mm7|chr2 (21259657-21259433) | |
| 415-639, gnl|monDom2|scaffold_7 (43537124-43536941) | |
| 415-639, gnl|oryCun1|scaffold_97225 (6851-7012) | |
| 415-639, gnl|panTro1|chr8_random (16931425-16931607) | |
| 415-639, gnl|rheMac2|chr9 (25181335-25181517) | |
| 415-639, gnl|rn3|chr17 (95201556-95201736) | |
| 415-639, gnl|tetNig1|chr6 (5689981-5689822) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| tes (0.415628) | |
| cte (0.29274) | |
| fli (0.202881) | |
| eye (0.170503) | |
| nmm (0.132802) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.415628) | |
| cte (0.29274) | |
| fli (0.202881) | |
| eye (0.170503) | |
| nmm (0.132802) |