Non-Coding RNA Search

Ss1.1-Ova1-OVR010040C06.5

Sequence:


               
               ACAGTAGTCGCTTGGGCCTCAGCCTGTGAGCTCCTGGAAAGGCGGCCGCCACCCCCTCCG
CGTTCCGTTACCCCCACCTTACGTACGCCGCGCCGCCTTTCTGCGGCCGCCTGCGCAGCG
CCGCGGCCGGCCTGGGCCTCCGCCCGCCTCTCTCTTTCCCTCTCTCCGAACCTCTGTGTG
TGTCCGCGGCGGGCCGGCGCGATGCGGCTGGGCCCGAAGCCCGCCACGCTGGGGCTGCTG
CTGCTGTGCGCCGTGGCAGCCGGCGCCGGGGAGGCTGAAGAGCTGCACTACCCGCAGGGA
GAGCACCGCACCGACTACGACCGCGAGGCGCTGCTGGGCGGCCAGGAAGAAGTCGATGAA
TATGTTAAACTCGCCCCTGAAGAGCAACAAAAAAGACTGAAGTCAATCATAAAGAAAATT
GACTTGGACTCAGATGGCTTTCTCACCGAAAGTGAACTTAGTTCATGGATTCAAATGTCT
TTTAAACATTATGCTATGCAAGAAGCAAAACAGCAGTTTGTTGAATATGATAAAAACAGT
GATGGTAGTGTGTCATGGGATGAATACAACATTCAGATGTATGATCGTGTGATCGACTTT
GATGAGAACACTGCCCTGGATGATGCAGAAGAGGAGTCTTTTAGGCAGCTTCATTTAAAG
GACAAGAAGAGATTTGACAAAGCCAACCAGGATTCAGATCCCGGTTTGAATCTTGAAGAA
TTTATTGCTTTTGAGCATCCAGAAGAAGTTGATTATATGACGGAATTTGTCATTCAAGAG
GCTTTAGAAGAACATGACAAAAATGGTGATGGATTTGTTAGTTTGGAAGAATTCCTTGGT
GACTACAGGCGGGATCCAACAAGTGAAGATCCAGAATGGATACTTGTTGAGAAAGATAGA
TTCCTGAATGACTATGACAAAGATGCTGATGGCAGTCTTGATCCCCAAGAGCTGCTGTCT
TGGGTAGTACCCAATAATCAAGGCATTGCACAAGAAGAGGCTCTTCACCTAATTGATGAA
ATGGATTTGAATAGTGACAGAAAGCTCTCAGAAGCAGAGATTCTGGAGAACCAGGACTTG
TTTCTTACCAGTGAAGCCACAGATTATGGCAGACAACTTCATGATGAATATTTCTATCAT
GATGAGCTTTAATCCCTGGGTGTATCTGAGTAGAGTACTGGCTCCTTTTATAGTTTGTTA
CCAGCTTTACTTTTGTGATAAAATGTTGATGTTATATTTCACACTAAGTCTTACCACAGT
CAAAAGTATCTTAATGTACATTCTAATTTTGGCCTTTTAGAAGAAAAATAAAACAAAACC
CTGATATTTATTCAAAATGTATTGAAGAAATGAAACCATATTGTGCCATATGACAACAAA
GTCTTTCCTAAATATTCCATCTGTTTGGTACTGTATTGTGGAATATTTGAGTTCTGTTTC
CATACTTGAAAAAAATGGGGGATTTTAGAGATGCCTGAACAATATTATTTAAGTAGTATG
TGACTGAGCTATCAAGTTTTGTTTTAAGTAGATTTAATTTGGGAACTGACAGAAGGACAT
TCTTTTTAGACTTAGCATTTTGTTTTAAAACCTTTAAAGGAACCTTAGAAGGACTTATAC
CTCACATGTTAATGTTGAGAAGTCCTACTTAATTTTAAAATGGTTTCTATAAAGGGTTTT
ACTGTGTGAAATAGAACTTTATATTTTTGCATATGTATAGATAGTAATTATATTTAATGT
GTAACTATAGCATTATGATGTGTGGAATTTGACATTGTCCAGAACTCTTTTCTTTTTGAC
TGATTAAAAATGAAACGTCCTATCTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAT
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGTAGTCGCTTGGGCCTCAGCCTGTGAGCTCCTGGAAAGGCGGCCGCCACCCCCTCCG
CGTTCCGTTACCCCCACCTTACGTACGCCGCGCCGCCTTTCTGCGGCCGCCTGCGCAGCG
CCGCGGCCGGCCTGGGCCTCCGCCCGCCTCTCTCTTTCCCTCTCTCCGAACCTCTGTGTG
TGTCCGCGGCGGGCCGGCGCGATGCGGCTGGGCCCGAAGCCCGCCACGCTGGGGCTGCTG
CTGCTGTGCGCCGTGGCAGCCGGCGCCGGGGAGGCTGAAGAGCTGCACTACCCGCAGGGA
GAGCACCGCACCGACTACGACCGCGAGGCGCTGCTGGGCGGCCAGGAAGAAGTCGATGAA
TATGTTAAACTCGCCCCTGAAGAGCAACAAAAAAGACTGAAGTCAATCATAAAGAAAATT
GACTTGGACTCAGATGGCTTTCTCACCGAAAGTGAACTTAGTTCATGGATTCAAATGTCT
TTTAAACATTATGCTATGCAAGAAGCAAAACAGCAGTTTGTTGAATATGATAAAAACAGT
GATGGTAGTGTGTCATGGGATGAATACAACATTCAGATGTATGATCGTGTGATCGACTTT
GATGAGAACACTGCCCTGGATGATGCAGAAGAGGAGTCTTTTAGGCAGCTTCATTTAAAG
GACAAGAAGAGATTTGACAAAGCCAACCAGGATTCAGATCCCGGTTTGAATCTTGAAGAA
TTTATTGCTTTTGAGCATCCAGAAGAAGTTGATTATATGACGGAATTTGTCATTCAAGAG
GCTTTAGAAGAACATGACAAAAATGGTGATGGATTTGTTAGTTTGGAAGAATTCCTTGGT
GACTACAGGCGGGATCCAACAAGTGAAGATCCAGAATGGATACTTGTTGAGAAAGATAGA
TTCCTGAATGACTATGACAAAGATGCTGATGGCAGTCTTGATCCCCAAGAGCTGCTGTCT
TGGGTAGTACCCAATAATCAAGGCATTGCACAAGAAGAGGCTCTTCACCTAATTGATGAA
ATGGATTTGAATAGTGACAGAAAGCTCTCAGAAGCAGAGATTCTGGAGAACCAGGACTTG
TTTCTTACCAGTGAAGCCACAGATTATGGCAGACAACTTCATGATGAATATTTCTATCAT
GATGAGCTTTAATCCCTGGGTGTATCTGAGTAGAGTACTGGCTCCTTTTATAGTTTGTTA
CCAGCTTTACTTTTGTGATAAAATGTTGATGTTATATTTCACACTAAGTCTTACCACAGT
CAAAAGTATCTTAATGTACATTCTAATTTTGGCCTTTTAGAAGAAAAATAAAACAAAACC
CTGATATTTATTCAAAATGTATTGAAGAAATGAAACCATATTGTGCCATATGACAACAAA
GTCTTTCCTAAATATTCCATCTGTTTGGTACTGTATTGTGGAATATTTGAGTTCTGTTTC
CATACTTGAAAAAAATGGGGGATTTTAGAGATGCCTGAACAATATTATTTAAGTAGTATG
TGACTGAGCTATCAAGTTTTGTTTTAAGTAGATTTAATTTGGGAACTGACAGAAGGACAT
TCTTTTTAGACTTAGCATTTTGTTTTAAAACCTTTAAAGGAACCTTAGAAGGACTTATAC
CTCACATGTTAATGTTGAGAAGTCCTACTTAATTTTAAAATGGTTTCTATAAAGGGTTTT
ACTGTGTGAAATAGAACTTTATATTTTTGCATATGTATAGATAGTAATTATATTTAATGT
GTAACTATAGCATTATGATGTGTGGAATTTGACATTGTCCAGAACTCTTTTCTTTTTGAC
TGATTAAAAATGAAACGTCCTATCTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAT
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|2143991|pir||I56519

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|2143991|pir||I56519

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1037-1156, - strand, RNAz p=0.880543
               

               
               1581-1699, + strand, RNAz p=0.998579

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1037-1156, - strand, RNAz p=0.880543
               

               
               1581-1699, + strand, RNAz p=0.998579

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_002902, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_002902, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               452-648, gnl|bosTau2|chr21 (21404637-21404833)
               

               
               452-648, gnl|Hg17|chr15 (75014922-75015118)
               

               
               452-648, gnl|Mm7|chr9 (56072798-56072994)
               


               
               998-1830, gnl|bosTau2|chr21 (21417981-21418828)
               

               
               998-1830, gnl|Hg17|chr15 (75028464-75029300)
               

               
               998-1830, gnl|Mm7|chr9 (56085723-56086554)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               452-648, gnl|bosTau2|chr21 (21404637-21404833)
               

               
               452-648, gnl|Hg17|chr15 (75014922-75015118)
               

               
               452-648, gnl|Mm7|chr9 (56072798-56072994)
               


               
               998-1830, gnl|bosTau2|chr21 (21417981-21418828)
               

               
               998-1830, gnl|Hg17|chr15 (75028464-75029300)
               

               
               998-1830, gnl|Mm7|chr9 (56085723-56086554)

Expressed library(ies): 33 entry(ies)

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Expressed library(ies): 33 entry(ies)

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               liv (1.31656)
               

               
               fco (0.78604)
               

               
               ret (0.514933)
               

               
               tra (0.492368)
               

               
               ova (0.387397)
               

               
               thg (0.380373)
               

               
               eep (0.367692)
               

               
               mgm (0.360685)
               

               
               vin (0.332557)
               

               
               ski (0.29347)
               

               
               spl (0.286369)
               

               
               csk (0.281492)
               

               
               ste (0.270416)
               

               
               pla (0.267344)
               

               
               cbl (0.229595)
               

               
               ece (0.229305)
               

               
               cty (0.20816)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               cbr (0.127975)
               

               
               ese (0.126502)
               

               
               ldo (0.0970026)

Expressed library(ies): 33 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (1.31656)
               

               
               fco (0.78604)
               

               
               ret (0.514933)
               

               
               tra (0.492368)
               

               
               ova (0.387397)
               

               
               thg (0.380373)
               

               
               eep (0.367692)
               

               
               mgm (0.360685)
               

               
               vin (0.332557)
               

               
               ski (0.29347)
               

               
               spl (0.286369)
               

               
               csk (0.281492)
               

               
               ste (0.270416)
               

               
               pla (0.267344)
               

               
               cbl (0.229595)
               

               
               ece (0.229305)
               

               
               cty (0.20816)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               cbr (0.127975)
               

               
               ese (0.126502)
               

               
               ldo (0.0970026)

	1037-1156, - strand, RNAz p=0.880543
	1581-1699, + strand, RNAz p=0.998579

	452-648, gnl\|bosTau2\|chr21 (21404637-21404833)
	452-648, gnl\|Hg17\|chr15 (75014922-75015118)
	452-648, gnl\|Mm7\|chr9 (56072798-56072994)

	998-1830, gnl\|bosTau2\|chr21 (21417981-21418828)
	998-1830, gnl\|Hg17\|chr15 (75028464-75029300)
	998-1830, gnl\|Mm7\|chr9 (56085723-56086554)

	liv (1.31656)
	fco (0.78604)
	ret (0.514933)
	tra (0.492368)
	ova (0.387397)
	thg (0.380373)
	eep (0.367692)
	mgm (0.360685)
	vin (0.332557)
	ski (0.29347)
	spl (0.286369)
	csk (0.281492)
	ste (0.270416)
	pla (0.267344)
	cbl (0.229595)
	ece (0.229305)
	cty (0.20816)
	hea (0.204499)
	col (0.195008)
	fbs (0.175346)
	sin (0.174948)
	eye (0.170503)
	fhi (0.169578)
	csp (0.161186)
	tbr (0.154178)
	lun (0.150489)
	isp (0.150376)
	bfe (0.149858)
	nmm (0.132802)
	kid (0.129735)
	cbr (0.127975)
	ese (0.126502)
	ldo (0.0970026)