Ss1.1-Ova1-OVR010040D04.5
|
GGGAGCGTATCCACGAAGCAGGTAGTCTTCCTTCAGAGACCGTGTCTGCCTCAGAAAATC
AAGAAGAAGGAATCAAAGTTTCAGTGGCGGTTCTCCCGAAACGAAACGCACAACAGACAG
AGGCGGAAACCCAGAAGTAAGCTTGGTGCCAGAGACAAGCGGCAAGCAGAAGAAAATGAG
AAGAATCTAGAAGACCAGTTGCTCAAAGCTGGAGACATGGGCAACTGTGTGCCAGGGATG
CAGCAGGATGGCGCCCCTGAGGAGGTGAAGGTCCCTGTCCAGGCAGAGGTCCCAGCAGGA
AAGCTGTGTCCTGACAGCCAGCTCTGTGTGGAGGACGGGGCCGTGCAGAACGGTCCCTCC
AGCCACAGCCCGGCCCCAGCAGGAGGCTGTGAGGGGCACCCCGGTCCTGAGCCTGGCGAG
GATGCTGGAGTGGGTGGTGCAGAGGCGGCGGCTGCAGAGCCCATGGCAGCAGAGGCCTGA
TGAGCTGGTAAACCTGGGGCCTGGTGCTGGTGGCCAGGCTGGAGGCTGGTTTGCCCTGGT
GTCACCTGTTACCCTTTGGCTTGGCTTGACCTCTCTTGGTGAGCTTTCCTGGGCCCTACG
AGGATCAGGTCCCTGACTTGGTTTCTGCACATCCATTTGAAATGTGTCCTAACGCCCCAG
TGTTAAAATACAAGAGGGCAGGTTATTTCTACACCTTGGGTGTTGGAGGCCCTCCCCTGG
CTCCAGCACTCCTCCTGGGAGGGGATGGACCAGCCAGTGCCTCTGTCCGCCCCCACCCCT
GGGGCCTCCAGGCCAAATTCTTGGCTACAAATCAAGGCTGAGTTGTCCATCCCCGCACCC
CTTGAGGGCAGTGTCCAGCCCCTGCTGCTTGTGTGGCTACTTGGTGACTGTAACAAACCC
TGGCTCTTGGTCAGTTGCCCTTCTGCACCTGACCCCCACACCCCAACCTAGGCCCCTGCT
GCTTTGGCAAAGAAAATGACATTGGAAGGAGGGGTGCCCTGCTTCCTGGCTTTTCTCAAA
GTGTTCCCATAGATCCTGGTAATCTGGAAATGAAGAGGTAATTCTGTGTGTGTACCTACT
CCTGCAGAATGTCTGAGAATGTATTCTGTGTTAGTATTAATCCCCCCCAAATTTTTTAAA
GGTTTTGTATTCAGCTCATCACATGAACACATGTTCCTACTGTCATATAAGGGCAAGCCA
ACTGGTGGGAAGCCCGTGTTACATGCTCTTTTAATCAGTGACTCCTTGGCCAAGTCACTT
CCCATGTATGCTATCCCGTGTTTATGTTGTCTGGAAAGTACTGTTGAGGCTTTAAGTAGA
TGCAACTGGCAGACCTTGGGGAGAAAGTGCCAACTGTCTTGACCAAACAACAGCTTGTCT
CTTTCTTGTTTAGTTACTTAAAGCAATAAATCATTTTTGAGTTTAAAAAAAAAAAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGGAGCGTATCCACGAAGCAGGTAGTCTTCCTTCAGAGACCGTGTCTGCCTCAGAAAATC
AAGAAGAAGGAATCAAAGTTTCAGTGGCGGTTCTCCCGAAACGAAACGCACAACAGACAG
AGGCGGAAACCCAGAAGTAAGCTTGGTGCCAGAGACAAGCGGCAAGCAGAAGAAAATGAG
AAGAATCTAGAAGACCAGTTGCTCAAAGCTGGAGACATGGGCAACTGTGTGCCAGGGATG
CAGCAGGATGGCGCCCCTGAGGAGGTGAAGGTCCCTGTCCAGGCAGAGGTCCCAGCAGGA
AAGCTGTGTCCTGACAGCCAGCTCTGTGTGGAGGACGGGGCCGTGCAGAACGGTCCCTCC
AGCCACAGCCCGGCCCCAGCAGGAGGCTGTGAGGGGCACCCCGGTCCTGAGCCTGGCGAG
GATGCTGGAGTGGGTGGTGCAGAGGCGGCGGCTGCAGAGCCCATGGCAGCAGAGGCCTGA
TGAGCTGGTAAACCTGGGGCCTGGTGCTGGTGGCCAGGCTGGAGGCTGGTTTGCCCTGGT
GTCACCTGTTACCCTTTGGCTTGGCTTGACCTCTCTTGGTGAGCTTTCCTGGGCCCTACG
AGGATCAGGTCCCTGACTTGGTTTCTGCACATCCATTTGAAATGTGTCCTAACGCCCCAG
TGTTAAAATACAAGAGGGCAGGTTATTTCTACACCTTGGGTGTTGGAGGCCCTCCCCTGG
CTCCAGCACTCCTCCTGGGAGGGGATGGACCAGCCAGTGCCTCTGTCCGCCCCCACCCCT
GGGGCCTCCAGGCCAAATTCTTGGCTACAAATCAAGGCTGAGTTGTCCATCCCCGCACCC
CTTGAGGGCAGTGTCCAGCCCCTGCTGCTTGTGTGGCTACTTGGTGACTGTAACAAACCC
TGGCTCTTGGTCAGTTGCCCTTCTGCACCTGACCCCCACACCCCAACCTAGGCCCCTGCT
GCTTTGGCAAAGAAAATGACATTGGAAGGAGGGGTGCCCTGCTTCCTGGCTTTTCTCAAA
GTGTTCCCATAGATCCTGGTAATCTGGAAATGAAGAGGTAATTCTGTGTGTGTACCTACT
CCTGCAGAATGTCTGAGAATGTATTCTGTGTTAGTATTAATCCCCCCCAAATTTTTTAAA
GGTTTTGTATTCAGCTCATCACATGAACACATGTTCCTACTGTCATATAAGGGCAAGCCA
ACTGGTGGGAAGCCCGTGTTACATGCTCTTTTAATCAGTGACTCCTTGGCCAAGTCACTT
CCCATGTATGCTATCCCGTGTTTATGTTGTCTGGAAAGTACTGTTGAGGCTTTAAGTAGA
TGCAACTGGCAGACCTTGGGGAGAAAGTGCCAACTGTCTTGACCAAACAACAGCTTGTCT
CTTTCTTGTTTAGTTACTTAAAGCAATAAATCATTTTTGAGTTTAAAAAAAAAAAAAAAA |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
77-237, gnl|bosTau2|chr1 (24568971-24569131) |
|
77-237, gnl|canFam2|chr23 (29523010-29522632) |
|
77-237, gnl|echTel1|scaffold_250973 (9677-9269) |
|
77-237, gnl|galGal2|chr2 (33477578-33478016) |
|
77-237, gnl|hg17|chr3 (16333371-16333758) |
|
77-237, gnl|Hg17|chr3 (16333745-16333579) |
|
77-237, gnl|loxAfr1|scaffold_2248 (74279-74687) |
|
77-237, gnl|mm7|chr17 (48142145-48142454) |
|
77-237, gnl|Mm7|chr17 (48142441-48142285) |
|
77-237, gnl|oryCun1|scaffold_211494 (52468-52111) |
|
77-237, gnl|panTro1|chr2 (16951415-16951802) |
|
77-237, gnl|rheMac2|chr2 (158637137-158637524) |
|
77-237, gnl|rn3|chr9 (6206443-6206134) |
| |
|
282-1423, gnl|bosTau2|chr1 (24569143-24570240) |
|
282-1423, gnl|Hg17|chr3 (16333555-16332368) |
|
282-1423, gnl|Mm7|chr17 (48142284-48141219) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
77-237, gnl|bosTau2|chr1 (24568971-24569131) |
|
77-237, gnl|canFam2|chr23 (29523010-29522632) |
|
77-237, gnl|echTel1|scaffold_250973 (9677-9269) |
|
77-237, gnl|galGal2|chr2 (33477578-33478016) |
|
77-237, gnl|hg17|chr3 (16333371-16333758) |
|
77-237, gnl|Hg17|chr3 (16333745-16333579) |
|
77-237, gnl|loxAfr1|scaffold_2248 (74279-74687) |
|
77-237, gnl|mm7|chr17 (48142145-48142454) |
|
77-237, gnl|Mm7|chr17 (48142441-48142285) |
|
77-237, gnl|oryCun1|scaffold_211494 (52468-52111) |
|
77-237, gnl|panTro1|chr2 (16951415-16951802) |
|
77-237, gnl|rheMac2|chr2 (158637137-158637524) |
|
77-237, gnl|rn3|chr9 (6206443-6206134) |
| |
|
282-1423, gnl|bosTau2|chr1 (24569143-24570240) |
|
282-1423, gnl|Hg17|chr3 (16333555-16332368) |
|
282-1423, gnl|Mm7|chr17 (48142284-48141219) |
|
fty (0.351679) |
|
sin (0.349895) |
|
csp (0.322373) |
|
cly (0.241284) |
|
cty (0.20816) |
|
cag (0.151194) |
|
hyp (0.142837) |
|
lnt (0.142308) |
|
ssp (0.13552) |
|
pla (0.133672) |
|
ute (0.132784) |
|
ecc (0.115035) |
|
jca (0.11396) |
|
spc (0.113366) |
|
eje (0.0988338) |
|
fty (0.351679) |
|
sin (0.349895) |
|
csp (0.322373) |
|
cly (0.241284) |
|
cty (0.20816) |
|
cag (0.151194) |
|
hyp (0.142837) |
|
lnt (0.142308) |
|
ssp (0.13552) |
|
pla (0.133672) |
|
ute (0.132784) |
|
ecc (0.115035) |
|
jca (0.11396) |
|
spc (0.113366) |
|
eje (0.0988338) |
