Non-Coding RNA Search

Ss1.1-Ova1-OVR010040H10.5.5

Sequence:


               
               TTTGGGCCGGTCTAGCTCTCTCCTGCTCGCTCGCTTCTCCATCTCTCTGTCCAATCGGAA
GTGCGTTCCCGGCCAGTTCCCGCAGTGCCTTGCGGCTGCCATGGCTGCCCCCGGCTGGCA
AGGGATTGCGCTCCTTCGGACCGTCTTAGGGGTCTGGACGCGGGGCCCAGAGGCTGCGAG
AGAGTGCGCGGCCCGGCTCCCCTCGCTCTTGGGCAGTCAGCGGAGGTGCATTTCCTGTGT
CGCGAGCCAGGCTTTCTCTGGTCCCCGCCTAGCCTCGGCTTCTCGCCCTAATGGCCACAG
CTCAGCCTTGGACTGCTTCCTCGGACTCTCTCAGCCCGATAGTTCGTTGACTTTTCACGT
CCCCGCCGTGTCCATGCACAGAGATGAGCAGGATCTCCTCTTGGTCCACCGCCCTGACAT
GCCTGAGAACCCCCGGGTCCTACGAGTAGTCATCCTGGGTGCCCCAAATGCAGGGAAGTC
AACACTCTCCAACAAGCTGCTGGGCCGAAAAGTGTTCCCTGTCTCCAAGAAGGTGCACAC
CACTCGCAGCCAAGCTCTGGGGGTCATCACAGAGAAAGAGGCCCAGGTGATTCTACTTGA
TACTCCTGGCCTCATCAGCCCTGCTAAACAGAAAAGGCATCATTTGGAGCCCTCTTTGTT
GGAAGATCCGTGGAAGAGCATGGAATCTGCTGATCTGGTTGTGGTTCTTGTGGATGTCTC
GGACCAGTGGACTCGGAACCAGCTCAGCCCGCAGGTGCTCCAGTGCTTGACCCAGTTCTC
CCAAGTGCCCAGCATCCTTGTCATGAACAAGGTGGATCGCCTGAAGCAGAAGTCAGTTCT
CCTGGAGCTCACGGCAGCCCTCACCGAAGGCGTGGTCAACGGCAAGAAGCTCACGGTGAG
GCAGGCCTTGCGCTCACAGCGGGATGCTCGTCGCCCCGGCCCAGCTGCTAAGGGCCCAGA
CACAGAGTCTGTGGGAGACCCTCAGAGGACTGGCTGGCCCCACTTCCAGGAGATCTTCAT
GTTGTCCGCTCTAAGCCAGGAGGATGTGAAAATACTAAAGCAATACCTCCTGGCACAGGC
CCGGCCCGGGCCCTGGGAGTTCCACAGTGGAGTTCTCACCAGCCAGACGCCTCAGGAGAT
CTGCGCCAACATTGTCCGAGAGAAGCTGCTAGAGTACCTGCCCCAGGAGGTGCCCTATGG
AGTGCAGCAGAAGACGATGATGTGGGAGGAAGGGCCAAGCGGGCAGCTGGTGATTGAACA
AAAGCTTCTGGTGCCCAAGGAATCTCATATGAGGCTCCTGATCGGTCCAAAGGGGCACTT
GATCTCCCAGATTGCACAGGAGGTGGGCCAAGACCTCATGGACATCTTCCTCTGTGAGGT
TCAGCTCCGCCTGTCTGTGAAACTCCTCAAGTGACCACCGTCTGCTGTCTTTCCTGAAGT
GTCCCTGCCCAAGATGCTGGCGGGAGCCGCGGACCAGACCAGAACTGCCCCCGACCCGGG
CCCACAGGGTCTGGGGAGGGTCTTGGTCGCTGGCTGACTGGCTAACTGCTGGCCTGGCCT
GGCCGAGTCCGCACAGCACCTGCCCAGCTGTGCTGCCTGTTGGGGGAAGGAACCCACCTT
AGCTCGGTTGCCAGGTGGTTCCACTCCCTGGGGCTAGAGCTGCTAAGGTCTTAGAAGTTG
GCCCTTTGGTGTGGGGGCAGGAGCGCTGTGGCACCGCTCCTGCCTGGCACTGGGCTGGTT
TCTCCCAGGGTGCCGGTTGTTAGCTGAGGAGATCCTTCCCCTCTCCCCTTAGTTCCTGCA
CCTCGCAGCTGTGTGAGGACCCATGTGTCCCAAGTGAGATCGTGCCGCCCACCCAGCCCT
CTCTAATAAAGTTAAAAGACAAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGGGCCGGTCTAGCTCTCTCCTGCTCGCTCGCTTCTCCATCTCTCTGTCCAATCGGAA
GTGCGTTCCCGGCCAGTTCCCGCAGTGCCTTGCGGCTGCCATGGCTGCCCCCGGCTGGCA
AGGGATTGCGCTCCTTCGGACCGTCTTAGGGGTCTGGACGCGGGGCCCAGAGGCTGCGAG
AGAGTGCGCGGCCCGGCTCCCCTCGCTCTTGGGCAGTCAGCGGAGGTGCATTTCCTGTGT
CGCGAGCCAGGCTTTCTCTGGTCCCCGCCTAGCCTCGGCTTCTCGCCCTAATGGCCACAG
CTCAGCCTTGGACTGCTTCCTCGGACTCTCTCAGCCCGATAGTTCGTTGACTTTTCACGT
CCCCGCCGTGTCCATGCACAGAGATGAGCAGGATCTCCTCTTGGTCCACCGCCCTGACAT
GCCTGAGAACCCCCGGGTCCTACGAGTAGTCATCCTGGGTGCCCCAAATGCAGGGAAGTC
AACACTCTCCAACAAGCTGCTGGGCCGAAAAGTGTTCCCTGTCTCCAAGAAGGTGCACAC
CACTCGCAGCCAAGCTCTGGGGGTCATCACAGAGAAAGAGGCCCAGGTGATTCTACTTGA
TACTCCTGGCCTCATCAGCCCTGCTAAACAGAAAAGGCATCATTTGGAGCCCTCTTTGTT
GGAAGATCCGTGGAAGAGCATGGAATCTGCTGATCTGGTTGTGGTTCTTGTGGATGTCTC
GGACCAGTGGACTCGGAACCAGCTCAGCCCGCAGGTGCTCCAGTGCTTGACCCAGTTCTC
CCAAGTGCCCAGCATCCTTGTCATGAACAAGGTGGATCGCCTGAAGCAGAAGTCAGTTCT
CCTGGAGCTCACGGCAGCCCTCACCGAAGGCGTGGTCAACGGCAAGAAGCTCACGGTGAG
GCAGGCCTTGCGCTCACAGCGGGATGCTCGTCGCCCCGGCCCAGCTGCTAAGGGCCCAGA
CACAGAGTCTGTGGGAGACCCTCAGAGGACTGGCTGGCCCCACTTCCAGGAGATCTTCAT
GTTGTCCGCTCTAAGCCAGGAGGATGTGAAAATACTAAAGCAATACCTCCTGGCACAGGC
CCGGCCCGGGCCCTGGGAGTTCCACAGTGGAGTTCTCACCAGCCAGACGCCTCAGGAGAT
CTGCGCCAACATTGTCCGAGAGAAGCTGCTAGAGTACCTGCCCCAGGAGGTGCCCTATGG
AGTGCAGCAGAAGACGATGATGTGGGAGGAAGGGCCAAGCGGGCAGCTGGTGATTGAACA
AAAGCTTCTGGTGCCCAAGGAATCTCATATGAGGCTCCTGATCGGTCCAAAGGGGCACTT
GATCTCCCAGATTGCACAGGAGGTGGGCCAAGACCTCATGGACATCTTCCTCTGTGAGGT
TCAGCTCCGCCTGTCTGTGAAACTCCTCAAGTGACCACCGTCTGCTGTCTTTCCTGAAGT
GTCCCTGCCCAAGATGCTGGCGGGAGCCGCGGACCAGACCAGAACTGCCCCCGACCCGGG
CCCACAGGGTCTGGGGAGGGTCTTGGTCGCTGGCTGACTGGCTAACTGCTGGCCTGGCCT
GGCCGAGTCCGCACAGCACCTGCCCAGCTGTGCTGCCTGTTGGGGGAAGGAACCCACCTT
AGCTCGGTTGCCAGGTGGTTCCACTCCCTGGGGCTAGAGCTGCTAAGGTCTTAGAAGTTG
GCCCTTTGGTGTGGGGGCAGGAGCGCTGTGGCACCGCTCCTGCCTGGCACTGGGCTGGTT
TCTCCCAGGGTGCCGGTTGTTAGCTGAGGAGATCCTTCCCCTCTCCCCTTAGTTCCTGCA
CCTCGCAGCTGTGTGAGGACCCATGTGTCCCAAGTGAGATCGTGCCGCCCACCCAGCCCT
CTCTAATAAAGTTAAAAGACAAGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9ESC4_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9ESC4_MOUSE

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1291-1409, + strand, RNAz p=0.578231
               

               
               1612-1721, - strand, RNAz p=0.66988

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1291-1409, + strand, RNAz p=0.578231
               

               
               1612-1721, - strand, RNAz p=0.66988

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-383, gnl|bosTau2|chr19 (13776672-13777053)
               

               
               1-383, gnl|Hg17|chr17 (24206079-24206461)
               

               
               1-383, gnl|Mm7|chr11 (78162031-78161652)
               


               
               810-1060, gnl|bosTau2|chr19 (13779844-13780094)
               

               
               810-1060, gnl|Hg17|chr17 (24209718-24209968)
               

               
               810-1060, gnl|Mm7|chr11 (78157216-78156966)
               


               
               1291-1861, gnl|bosTau2|chr19 (13780667-13781212)
               

               
               1291-1861, gnl|Hg17|chr17 (24211574-24212131)
               

               
               1291-1861, gnl|Mm7|chr11 (78155750-78155127)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-383, gnl|bosTau2|chr19 (13776672-13777053)
               

               
               1-383, gnl|Hg17|chr17 (24206079-24206461)
               

               
               1-383, gnl|Mm7|chr11 (78162031-78161652)
               


               
               810-1060, gnl|bosTau2|chr19 (13779844-13780094)
               

               
               810-1060, gnl|Hg17|chr17 (24209718-24209968)
               

               
               810-1060, gnl|Mm7|chr11 (78157216-78156966)
               


               
               1291-1861, gnl|bosTau2|chr19 (13780667-13781212)
               

               
               1291-1861, gnl|Hg17|chr17 (24211574-24212131)
               

               
               1291-1861, gnl|Mm7|chr11 (78155750-78155127)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               eli (0.151814)
               

               
               lnt (0.142308)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               eli (0.151814)
               

               
               lnt (0.142308)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)

	1291-1409, + strand, RNAz p=0.578231
	1612-1721, - strand, RNAz p=0.66988

	1-383, gnl\|bosTau2\|chr19 (13776672-13777053)
	1-383, gnl\|Hg17\|chr17 (24206079-24206461)
	1-383, gnl\|Mm7\|chr11 (78162031-78161652)

	810-1060, gnl\|bosTau2\|chr19 (13779844-13780094)
	810-1060, gnl\|Hg17\|chr17 (24209718-24209968)
	810-1060, gnl\|Mm7\|chr11 (78157216-78156966)

	1291-1861, gnl\|bosTau2\|chr19 (13780667-13781212)
	1291-1861, gnl\|Hg17\|chr17 (24211574-24212131)
	1291-1861, gnl\|Mm7\|chr11 (78155750-78155127)

	fbs (0.175346)
	fhi (0.169578)
	eli (0.151814)
	lnt (0.142308)
	eru (0.120048)
	ebs (0.118301)
	med (0.116252)
	nbm (0.0993246)