Non-Coding RNA Search

Ss1.1-Ova1-OVR010041C11.5

Sequence:


               
               AGCAGAGACCGGGAGGCTTCGGGCATAGAACTTGCAGCTCAAGAACCAGAGGAACTGAAA
AAGAGGTAAAGGTCTGATTTGTACTTCTCCGTTTATTTGGTGCTAATGAATGGAAGATGT
GCAGGTGTGTGAGTGCTCGAGAGCTCGGCCCGGACAGCCAGGGGGTCGAAGGCTTGTTGG
CAGTGCTGAAGCTGGCGTGCCAGCAGAGACCGGGAGGCTTCGGGCATAGAACTTGCAGCT
CAAGAACCAGAGGAACTGAAAAAGAGGAGCGCCTTTCCCCACTTCTCCCAGTCCCAGCCT
CGGAGGATGAGGCTCCTTGAGAAACTCCGCGCCTCGGCCGGGGGCACTGCGGTTCAGGAG
CCTACCTTCACCAATGTGCTTACTCCTGATCGCATCCCTGAGTTCTGCATCCCGCCGCGA
CTGCCTGCGCCGTGTGCGCTCGAGTCTTCGCCCCCGACTGCCGCTTTGCCCCGACGGTGC
GCCGCCGAGCCGGACCTGTGGCCCCGGGAAGCAGACGACTGCGCGGGGCGCACGGACTGG
GACCCGCGCTCGCAGGCCGCGCTCTCGCTGCCTCACCTGCCCCGAGCGCGCACCGCTTAC
GGCTTCTGCGCTCTCCTCGAGAGCCCGCACACCCGCCGCAAGGAGTCGCTCTTTCTAGGG
GGCTCTGGCACCGCTGCGCTCCTGCCCGTGCCCCGCCGCCGGGCGCGCACCTTCTGCGGC
GGCGGAGGCGACCCCCTCGCGCCCCCGGAAGAAGCCCCTGCCGCGCTTCCAGCGGCCCCT
GGCGGTCTCTGCGCGCCTCCCGCTGCGCCCGCCCCGCGGCCCCGCGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCAGAGACCGGGAGGCTTCGGGCATAGAACTTGCAGCTCAAGAACCAGAGGAACTGAAA
AAGAGGTAAAGGTCTGATTTGTACTTCTCCGTTTATTTGGTGCTAATGAATGGAAGATGT
GCAGGTGTGTGAGTGCTCGAGAGCTCGGCCCGGACAGCCAGGGGGTCGAAGGCTTGTTGG
CAGTGCTGAAGCTGGCGTGCCAGCAGAGACCGGGAGGCTTCGGGCATAGAACTTGCAGCT
CAAGAACCAGAGGAACTGAAAAAGAGGAGCGCCTTTCCCCACTTCTCCCAGTCCCAGCCT
CGGAGGATGAGGCTCCTTGAGAAACTCCGCGCCTCGGCCGGGGGCACTGCGGTTCAGGAG
CCTACCTTCACCAATGTGCTTACTCCTGATCGCATCCCTGAGTTCTGCATCCCGCCGCGA
CTGCCTGCGCCGTGTGCGCTCGAGTCTTCGCCCCCGACTGCCGCTTTGCCCCGACGGTGC
GCCGCCGAGCCGGACCTGTGGCCCCGGGAAGCAGACGACTGCGCGGGGCGCACGGACTGG
GACCCGCGCTCGCAGGCCGCGCTCTCGCTGCCTCACCTGCCCCGAGCGCGCACCGCTTAC
GGCTTCTGCGCTCTCCTCGAGAGCCCGCACACCCGCCGCAAGGAGTCGCTCTTTCTAGGG
GGCTCTGGCACCGCTGCGCTCCTGCCCGTGCCCCGCCGCCGGGCGCGCACCTTCTGCGGC
GGCGGAGGCGACCCCCTCGCGCCCCCGGAAGAAGCCCCTGCCGCGCTTCCAGCGGCCCCT
GGCGGTCTCTGCGCGCCTCCCGCTGCGCCCGCCCCGCGGCCCCGCGGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61884393|ref|XP_608309.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61884393|ref|XP_608309.1|

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               29-173, gnl|bosTau2|chr10 (32794701-32794558)
               

               
               29-173, gnl|Mm7|chr9 (67790311-67790447)
               


               
               265-828, gnl|bosTau2|chr10 (32794469-32793903)
               

               
               265-828, gnl|Hg17|chr15 (60244517-60243957)
               

               
               265-828, gnl|Mm7|chr9 (67790528-67791064)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               29-173, gnl|bosTau2|chr10 (32794701-32794558)
               

               
               29-173, gnl|Mm7|chr9 (67790311-67790447)
               


               
               265-828, gnl|bosTau2|chr10 (32794469-32793903)
               

               
               265-828, gnl|Hg17|chr15 (60244517-60243957)
               

               
               265-828, gnl|Mm7|chr9 (67790528-67791064)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pla (2.27242)
               

               
               mcp (0.170648)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (2.27242)
               

               
               mcp (0.170648)

	29-173, gnl\|bosTau2\|chr10 (32794701-32794558)
	29-173, gnl\|Mm7\|chr9 (67790311-67790447)

	265-828, gnl\|bosTau2\|chr10 (32794469-32793903)
	265-828, gnl\|Hg17\|chr15 (60244517-60243957)
	265-828, gnl\|Mm7\|chr9 (67790528-67791064)