Non-Coding RNA Search

Ss1.1-Ova1-OVR010042B02.5

Sequence:


               
               GAAAAAACATTTCAACTCCCTCTCCCATTTAGATTATTTATTAACATCTTTCAAAAATAA
GATTAGTTCTGTAAGTAATTTAGAGACATGAGAGTATTTATTTTGGGTATGACTGGCCCA
CCACGTGGATGGTGTGTGTATTCATGTTTATGTGTGTATGTGAGTGAGAGAAAAATCTGT
CGAGAAGAGGCACACCTATGGCTGTTGTTCAGATGCATAAAGATAATATATTTTAAGACA
GCTCCCAGGAAGGGTATCTGTAGTTATCAGAGAAGCCCTTGGACATTTGGCTCAGAAAAC
AGATGCCCTGGTTTGTGCAAACATGCTGTGAAAGAGGCAGCTCTTTTCTGCCTCTGGCTA
TTCCTGGGACCCCCATCAGTCAGGAAAAGCCCCCCAGCTCACCGGTGGCTGCTGACTCTC
GCCTGGGCTTCCTCTTCTATGGCTAAAGCCGGGGTACAGATTTCACGCAGTCCCGGAAGT
TCTTGTGAGCTCAGGTGAGAGCACGTCTGAACCTCGGCTGCTCCTTCTGTTAAAGTTCAG
CCTTTCAGGTAACTTCATGTTCCTTTAGGACCCTTGGGTTGAAGTCATTCCGTTTCCTCC
GAAGCCCCCTGGGGGTGCCGTCCTTACTTACAGAGAGCTCTTTCTAGAGCAGCCCAGGTT
ACCTCGAGGGGCTGGTTCGGGCACTGACCTCTGAGATGCGCTCTGGGTGAGGAGGAGGGC
AGTGGAGCAGGTTTTGTCACATCCCTGTTTTTCCCTTCCCCTCACTCTCCACCATTCCTT
TACGTGGGGAAAACGGTTTAAAGGAATACTTAAATGATGGTTTGTTTCCATCATGTGTTC
ATACAGATGAAACTAACTTAGGGTTTAAGTCGGAAAAAGTGGCCAAACCTAAAGTTCCCA
TGTGAGGGGAAAATGGTGTACACAATTTAAATAGTCTCCCGTACATATATGTTCACACTG
GGATTTGGTTTACTGCTTTGTAAATAAAAGGAAAAACTCTGGGTATATGTATAGATTTTT
TTTTCATTGTGGACACTAACTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAAAACATTTCAACTCCCTCTCCCATTTAGATTATTTATTAACATCTTTCAAAAATAA
GATTAGTTCTGTAAGTAATTTAGAGACATGAGAGTATTTATTTTGGGTATGACTGGCCCA
CCACGTGGATGGTGTGTGTATTCATGTTTATGTGTGTATGTGAGTGAGAGAAAAATCTGT
CGAGAAGAGGCACACCTATGGCTGTTGTTCAGATGCATAAAGATAATATATTTTAAGACA
GCTCCCAGGAAGGGTATCTGTAGTTATCAGAGAAGCCCTTGGACATTTGGCTCAGAAAAC
AGATGCCCTGGTTTGTGCAAACATGCTGTGAAAGAGGCAGCTCTTTTCTGCCTCTGGCTA
TTCCTGGGACCCCCATCAGTCAGGAAAAGCCCCCCAGCTCACCGGTGGCTGCTGACTCTC
GCCTGGGCTTCCTCTTCTATGGCTAAAGCCGGGGTACAGATTTCACGCAGTCCCGGAAGT
TCTTGTGAGCTCAGGTGAGAGCACGTCTGAACCTCGGCTGCTCCTTCTGTTAAAGTTCAG
CCTTTCAGGTAACTTCATGTTCCTTTAGGACCCTTGGGTTGAAGTCATTCCGTTTCCTCC
GAAGCCCCCTGGGGGTGCCGTCCTTACTTACAGAGAGCTCTTTCTAGAGCAGCCCAGGTT
ACCTCGAGGGGCTGGTTCGGGCACTGACCTCTGAGATGCGCTCTGGGTGAGGAGGAGGGC
AGTGGAGCAGGTTTTGTCACATCCCTGTTTTTCCCTTCCCCTCACTCTCCACCATTCCTT
TACGTGGGGAAAACGGTTTAAAGGAATACTTAAATGATGGTTTGTTTCCATCATGTGTTC
ATACAGATGAAACTAACTTAGGGTTTAAGTCGGAAAAAGTGGCCAAACCTAAAGTTCCCA
TGTGAGGGGAAAATGGTGTACACAATTTAAATAGTCTCCCGTACATATATGTTCACACTG
GGATTTGGTTTACTGCTTTGTAAATAAAAGGAAAAACTCTGGGTATATGTATAGATTTTT
TTTTCATTGTGGACACTAACTTTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               315-471, - strand, RNAz p=0.791184

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               315-471, - strand, RNAz p=0.791184

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-1044, gnl|bosTau2|chr12 (48374268-48375314)
               

               
               4-1044, gnl|Hg17|chr1 (53424248-53423201)
               

               
               4-1044, gnl|Mm7|chr4 (107249269-107250373)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-1044, gnl|bosTau2|chr12 (48374268-48375314)
               

               
               4-1044, gnl|Hg17|chr1 (53424248-53423201)
               

               
               4-1044, gnl|Mm7|chr4 (107249269-107250373)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fcc (0.39557)
               

               
               nms (0.213858)
               

               
               hyp (0.142837)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.39557)
               

               
               nms (0.213858)
               

               
               hyp (0.142837)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	4-1044, gnl\|bosTau2\|chr12 (48374268-48375314)
	4-1044, gnl\|Hg17\|chr1 (53424248-53423201)
	4-1044, gnl\|Mm7\|chr4 (107249269-107250373)

	fcc (0.39557)
	nms (0.213858)
	hyp (0.142837)
	ebs (0.118301)
	ecc (0.115035)