Non-Coding RNA Search

Ss1.1-Ova1-OVR010044B05.5

Sequence:


               
               ACACAGGCAAGGGGCCCTTACCCTCCCACCTGCCGGTCAGGCAGCCAGGCAGGGGCCGGG
GGGAGAGAACGTGAAAGCCAAAGACTGTGGTGACTCAAGGGGCTGAGGAGTTTCGGGAGA
AGAGGGCAGCCGTCCCAGCACTGACTCTGGAGCAGCCCTGAACCCTCCCAGTACTTCGAA
TCCACACAGCCCCAGACTCGTGGATTCACCTGTCCCCAAAAAACAGTCCGCAGGTCCATG
GCTGGCAGGCCTGTGCCCGCCGGCCGTCAGGAGGAGGAGCTTGCCAAAGACCCTGGGCAG
AAACTGTCCCTGGCGCGGCCTCCAGGCCGCCTGCCCAGCATTGATGAGACCCGACCAGCT
GGCGGCTGGCGCGGGAGCTGTGCGACCTGGCGCGCGTGCACCTGCGCGAGCTGAGCCCCC
CGCGCTACAAGCTGGTGTGCAGCGTGGTGCTCGGGCCGCGCGCCGGCCAGGGCGTGCACG
TGGCCAGCCGCGCGCTCTGGGACACCGCGTGCGACGGGCTGGCCTCGGCCACCGTCACCA
ACGCTTCGCTCTTTGCCGTGGCCACGGTCCACGGGCTCTACTGCGAGTGAGGAGGCCTCG
AGGTCTGCAAAAATGGTTTATTATCCTAGGAGGAGGCCCTCCCTGGGGCTCCCAGCCCAA
TAAATAAATGTCTGTCAATAAATAAAAGTGGTCCATAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACACAGGCAAGGGGCCCTTACCCTCCCACCTGCCGGTCAGGCAGCCAGGCAGGGGCCGGG
GGGAGAGAACGTGAAAGCCAAAGACTGTGGTGACTCAAGGGGCTGAGGAGTTTCGGGAGA
AGAGGGCAGCCGTCCCAGCACTGACTCTGGAGCAGCCCTGAACCCTCCCAGTACTTCGAA
TCCACACAGCCCCAGACTCGTGGATTCACCTGTCCCCAAAAAACAGTCCGCAGGTCCATG
GCTGGCAGGCCTGTGCCCGCCGGCCGTCAGGAGGAGGAGCTTGCCAAAGACCCTGGGCAG
AAACTGTCCCTGGCGCGGCCTCCAGGCCGCCTGCCCAGCATTGATGAGACCCGACCAGCT
GGCGGCTGGCGCGGGAGCTGTGCGACCTGGCGCGCGTGCACCTGCGCGAGCTGAGCCCCC
CGCGCTACAAGCTGGTGTGCAGCGTGGTGCTCGGGCCGCGCGCCGGCCAGGGCGTGCACG
TGGCCAGCCGCGCGCTCTGGGACACCGCGTGCGACGGGCTGGCCTCGGCCACCGTCACCA
ACGCTTCGCTCTTTGCCGTGGCCACGGTCCACGGGCTCTACTGCGAGTGAGGAGGCCTCG
AGGTCTGCAAAAATGGTTTATTATCCTAGGAGGAGGCCCTCCCTGGGGCTCCCAGCCCAA
TAAATAAATGTCTGTCAATAAATAAAAGTGGTCCATAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61865414|ref|XP_594476.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61865414|ref|XP_594476.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               54-152, - strand, RNAz p=0.924473

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               54-152, - strand, RNAz p=0.924473

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               1-152, gnl|bosTau2|chr3 (68164091-68163941)
               

               
               1-152, gnl|canFam2|chr15 (18523461-18522797)
               

               
               1-152, gnl|dasNov1|scaffold_62566 (6833-7547)
               

               
               1-152, gnl|echTel1|scaffold_314315 (43036-43652)
               

               
               1-152, gnl|hg17|chr1 (44941567-44942250)
               

               
               1-152, gnl|Hg17|chr1 (44942187-44942035)
               

               
               1-152, gnl|loxAfr1|scaffold_1997 (108964-109619)
               

               
               1-152, gnl|mm7|chr4 (116503766-116503151)
               

               
               1-152, gnl|Mm7|chr4 (116503212-116503361)
               

               
               1-152, gnl|monDom2|scaffold_70 (7965463-7964735)
               

               
               1-152, gnl|oryCun1|scaffold_203905 (6038-5399)
               

               
               1-152, gnl|panTro1|chr1_random (65733677-65732994)
               

               
               1-152, gnl|rheMac2|chr1 (47736473-47737127)
               

               
               1-152, gnl|rn3|chr5 (137447592-137446984)
               


               
               361-702, gnl|bosTau2|chr3 (68162952-68162614)
               

               
               361-702, gnl|Hg17|chr1 (44940997-44940658)
               

               
               361-702, gnl|Mm7|chr4 (116504851-116505192)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-152, gnl|bosTau2|chr3 (68164091-68163941)
               

               
               1-152, gnl|canFam2|chr15 (18523461-18522797)
               

               
               1-152, gnl|dasNov1|scaffold_62566 (6833-7547)
               

               
               1-152, gnl|echTel1|scaffold_314315 (43036-43652)
               

               
               1-152, gnl|hg17|chr1 (44941567-44942250)
               

               
               1-152, gnl|Hg17|chr1 (44942187-44942035)
               

               
               1-152, gnl|loxAfr1|scaffold_1997 (108964-109619)
               

               
               1-152, gnl|mm7|chr4 (116503766-116503151)
               

               
               1-152, gnl|Mm7|chr4 (116503212-116503361)
               

               
               1-152, gnl|monDom2|scaffold_70 (7965463-7964735)
               

               
               1-152, gnl|oryCun1|scaffold_203905 (6038-5399)
               

               
               1-152, gnl|panTro1|chr1_random (65733677-65732994)
               

               
               1-152, gnl|rheMac2|chr1 (47736473-47737127)
               

               
               1-152, gnl|rn3|chr5 (137447592-137446984)
               


               
               361-702, gnl|bosTau2|chr3 (68162952-68162614)
               

               
               361-702, gnl|Hg17|chr1 (44940997-44940658)
               

               
               361-702, gnl|Mm7|chr4 (116504851-116505192)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nmm (0.265604)
               

               
               nlu (0.191681)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.265604)
               

               
               nlu (0.191681)

	1-152, gnl\|bosTau2\|chr3 (68164091-68163941)
	1-152, gnl\|canFam2\|chr15 (18523461-18522797)
	1-152, gnl\|dasNov1\|scaffold_62566 (6833-7547)
	1-152, gnl\|echTel1\|scaffold_314315 (43036-43652)
	1-152, gnl\|hg17\|chr1 (44941567-44942250)
	1-152, gnl\|Hg17\|chr1 (44942187-44942035)
	1-152, gnl\|loxAfr1\|scaffold_1997 (108964-109619)
	1-152, gnl\|mm7\|chr4 (116503766-116503151)
	1-152, gnl\|Mm7\|chr4 (116503212-116503361)
	1-152, gnl\|monDom2\|scaffold_70 (7965463-7964735)
	1-152, gnl\|oryCun1\|scaffold_203905 (6038-5399)
	1-152, gnl\|panTro1\|chr1_random (65733677-65732994)
	1-152, gnl\|rheMac2\|chr1 (47736473-47737127)
	1-152, gnl\|rn3\|chr5 (137447592-137446984)

	361-702, gnl\|bosTau2\|chr3 (68162952-68162614)
	361-702, gnl\|Hg17\|chr1 (44940997-44940658)
	361-702, gnl\|Mm7\|chr4 (116504851-116505192)