Non-Coding RNA Search

Ss1.1-Ova1-OVR010044C08.5

Sequence:


               
               GGCCTTCCGGGCAGCGGGCAGGAAACTGGAAGGGGTTCCTGAGCCCGCGAATCTGCAGGG
GAAGTAGAAGGACGTCTGTGTGTGCAAGGGAGACCTCTGCCTCATTTACTAAATCCCTGT
ACTGTGCCCAGGAAAGGGCGTGGGGGTTGAGGCCCTTCTTCAAGTGTCTGGAGCTCAGAG
ATGCAGCCCAGGGGAGGGAACTGTGACTAGTTAAGGAGGCCATGCTTACTGTTGCTTCCA
GAGTCCATGTCAACACTGAGTCTTCAGCTGCTGGTGGCAGCTGCTCAGCAGACCCTGGGC
ATGGGGAGGAGCCGGGGCCCACCCCGAGCCGTGTGCCTTCATCTAGCCGGAGAGGTGCTG
GCTGTGGCCAGGGGACTTAAGCCAGCTCTGCTCTATGATTGCAACTGTGCAGGGGCAGCA
GAGCTCCAGAGCTATCTGGAGCAGCTGCAGGGCCTGGGCTTCCCGACCCGGGGGCTTCAC
ATTCTTGAGATTGGAGAAGACAGCCTGATTGTCTGTCCTGAGCGTGTGTGTCAGCACTTG
GAGCAGGTGCTGCTTGGTGCCGTAGCCTTTGTGGATGTTTCCAGCGCTCAGCCTCACCCT
TCCGTCTGCTCCCTGGACCAGCTTCAGGACTTGAAGGCCCTGCTGGCTGAGATCATCGCT
CATTTGCAGGGACTGAAGACGGACCTGTCCCTGGCAGTCTCCAGCAGCAGGCTCCGTTCC
TCAGACTGGAATCTCTGTACTGTGTTTGGGATCCTCCTGGGCTATCCTGTCCCCTATACC
TTTCACGTGAGCCAGGGAGGTGACAATTGCTTAGCCCTGACTCCACTACGGGTATTCACT
GCCCGGATCTCTTGGCGACACCGTCAACCACCAGTCTTGCTCTATTCCTTTAGCGTCCCA
GAGAGCTTGTTCCCGGCCCTGAGGGACATTCTAAATACTTGGGAGAAGGACCTTAGAACT
CGATGTAGGACTCAGAATGACTTTGCTGACCTCAGCATCTCCTCCGAGGTGGTCACCCTG
CCTGCTGTGGCCCTCTGACTGTAACTCTTTCCTCGCATAGAAGGTGCTCGGCCTTCAAAA
CGTGACCCTGTTTGGAGATGGGTCCTCCCCGGAGAAGGTGGACTGGGGCATTCGGATGGG
CCCTAACCTGACACGACTGGCATCCTCAGAGAAGGGAGAGTTTGGGCGCAGAGGTGGCTA
GCTGGAAGATGCGAAGAGGGGAGAAGACAGCCGTCCGCAGGGGACGTGGCCCAGAACGGA
CCCTTCCCCTGGAGCCCTCGGGAGGAAGCACCCCCCACACCGCCGGCCCTGGATCTGGGA
CTTCTCGCCTCCAGAACCATGAGAAAATAAATGCTTGTTCTTTAAGTCAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCTTCCGGGCAGCGGGCAGGAAACTGGAAGGGGTTCCTGAGCCCGCGAATCTGCAGGG
GAAGTAGAAGGACGTCTGTGTGTGCAAGGGAGACCTCTGCCTCATTTACTAAATCCCTGT
ACTGTGCCCAGGAAAGGGCGTGGGGGTTGAGGCCCTTCTTCAAGTGTCTGGAGCTCAGAG
ATGCAGCCCAGGGGAGGGAACTGTGACTAGTTAAGGAGGCCATGCTTACTGTTGCTTCCA
GAGTCCATGTCAACACTGAGTCTTCAGCTGCTGGTGGCAGCTGCTCAGCAGACCCTGGGC
ATGGGGAGGAGCCGGGGCCCACCCCGAGCCGTGTGCCTTCATCTAGCCGGAGAGGTGCTG
GCTGTGGCCAGGGGACTTAAGCCAGCTCTGCTCTATGATTGCAACTGTGCAGGGGCAGCA
GAGCTCCAGAGCTATCTGGAGCAGCTGCAGGGCCTGGGCTTCCCGACCCGGGGGCTTCAC
ATTCTTGAGATTGGAGAAGACAGCCTGATTGTCTGTCCTGAGCGTGTGTGTCAGCACTTG
GAGCAGGTGCTGCTTGGTGCCGTAGCCTTTGTGGATGTTTCCAGCGCTCAGCCTCACCCT
TCCGTCTGCTCCCTGGACCAGCTTCAGGACTTGAAGGCCCTGCTGGCTGAGATCATCGCT
CATTTGCAGGGACTGAAGACGGACCTGTCCCTGGCAGTCTCCAGCAGCAGGCTCCGTTCC
TCAGACTGGAATCTCTGTACTGTGTTTGGGATCCTCCTGGGCTATCCTGTCCCCTATACC
TTTCACGTGAGCCAGGGAGGTGACAATTGCTTAGCCCTGACTCCACTACGGGTATTCACT
GCCCGGATCTCTTGGCGACACCGTCAACCACCAGTCTTGCTCTATTCCTTTAGCGTCCCA
GAGAGCTTGTTCCCGGCCCTGAGGGACATTCTAAATACTTGGGAGAAGGACCTTAGAACT
CGATGTAGGACTCAGAATGACTTTGCTGACCTCAGCATCTCCTCCGAGGTGGTCACCCTG
CCTGCTGTGGCCCTCTGACTGTAACTCTTTCCTCGCATAGAAGGTGCTCGGCCTTCAAAA
CGTGACCCTGTTTGGAGATGGGTCCTCCCCGGAGAAGGTGGACTGGGGCATTCGGATGGG
CCCTAACCTGACACGACTGGCATCCTCAGAGAAGGGAGAGTTTGGGCGCAGAGGTGGCTA
GCTGGAAGATGCGAAGAGGGGAGAAGACAGCCGTCCGCAGGGGACGTGGCCCAGAACGGA
CCCTTCCCCTGGAGCCCTCGGGAGGAAGCACCCCCCACACCGCCGGCCCTGGATCTGGGA
CTTCTCGCCTCCAGAACCATGAGAAAATAAATGCTTGTTCTTTAAGTCAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5REJ0_PONPY

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5REJ0_PONPY

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               184-463, - strand, RNAz p=0.908355
               

               
               664-783, + strand, RNAz p=0.928692

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               184-463, - strand, RNAz p=0.908355
               

               
               664-783, + strand, RNAz p=0.928692

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               147-1071, gnl|bosTau2|chr16 (50811963-50811041)
               

               
               147-1071, gnl|Hg17|chr1 (206345454-206344532)
               

               
               147-1071, gnl|Mm7|chr1 (192726859-192727797)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               147-1071, gnl|bosTau2|chr16 (50811963-50811041)
               

               
               147-1071, gnl|Hg17|chr1 (206345454-206344532)
               

               
               147-1071, gnl|Mm7|chr1 (192726859-192727797)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               elu (0.385356)
               

               
               nlu (0.383362)
               

               
               nco (0.323468)
               

               
               eje (0.197668)
               

               
               ton (0.1755)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               nlu (0.383362)
               

               
               nco (0.323468)
               

               
               eje (0.197668)
               

               
               ton (0.1755)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

	184-463, - strand, RNAz p=0.908355
	664-783, + strand, RNAz p=0.928692

	147-1071, gnl\|bosTau2\|chr16 (50811963-50811041)
	147-1071, gnl\|Hg17\|chr1 (206345454-206344532)
	147-1071, gnl\|Mm7\|chr1 (192726859-192727797)

	elu (0.385356)
	nlu (0.383362)
	nco (0.323468)
	eje (0.197668)
	ton (0.1755)
	cov (0.132153)
	ese (0.126502)
	tra (0.123092)
	ebs (0.118301)
	cty (0.10408)
	nbm (0.0993246)
	ldo (0.0970026)