Non-Coding RNA Search

Ss1.1-Ova1-OVR010044D10.5

Sequence:


               
               GGCTACAGGGCGTCGCTAGGGGAGCGAGCTGTGACCGGTTGGGCCGCTCTTAGCGTGGGA
CGGAGCTTCGGCTACAGTTCGGCTACCTGCGGCCTCCCCTTCATGTCGGCCCTCGAGAAG
AGCATGCACCTCGGCCGTCTGCCCTCTCGCCCGCCTCTCCCCGGCAGCGGGGGCAGTCAG
AGCGGAGCCAAGATGCGAATGGGCCCTGGAAGAAAGCGGGACTTTTCTCCTGTTCCTTGG
AGTCAGTACTTTGAGTCAATGGAAGATGTAGAAGTAGAGAATGAAACTGGCAAGGATACT
TTTCGAGTTTATAAGAGTGGCTCAGAGGGTCCTGTCCTACTCCTTCTGCATGGAGGAGGC
CATTCTGCCCTTTCCTGGGCTGTGTTCACGGCAGCAATCATTAGCAGAGTTCAGTGTAGG
ATTGTGGCTTTGGATCTTCGAGGTCATGGTGAAACAAAAGTCAAGAATTCTGAAGACCTG
TCTGCAGAAACAATGGCAAAAGATGTGGGCAATGTGGTTGAAGCCATGTACGGGGACCTC
CCCCCTCCAATTATGCTGATTGGACATAGCATGGGCGGTGCTATTGCAGTCCACACAGCC
TCATCCAACCTGGTGCCAAGCCTCCTGGGTCTGTGCATGATTGATGTTGTGGAAGGTACA
GCCATGGATGCACTTAATAGCATGCAGAATTTCTTACGTGGTCGTCCTAAAACCTTCAAG
TCTTTGGAGAATGCCATTGAATGGAGTGTGAAGAGTGGCCAGATTCGAAATCTGGAGTCT
GCTCGAGTCTCAATGGTTGGCCAAGTCAAACAGTGTGAAGGAATTACAAGTCCAGAAGGC
TCAAAATCTATAGTGGAAGGAATCATAGAGGAGGAAGAAGAAGATGAAGAAGGAAGTGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTACAGGGCGTCGCTAGGGGAGCGAGCTGTGACCGGTTGGGCCGCTCTTAGCGTGGGA
CGGAGCTTCGGCTACAGTTCGGCTACCTGCGGCCTCCCCTTCATGTCGGCCCTCGAGAAG
AGCATGCACCTCGGCCGTCTGCCCTCTCGCCCGCCTCTCCCCGGCAGCGGGGGCAGTCAG
AGCGGAGCCAAGATGCGAATGGGCCCTGGAAGAAAGCGGGACTTTTCTCCTGTTCCTTGG
AGTCAGTACTTTGAGTCAATGGAAGATGTAGAAGTAGAGAATGAAACTGGCAAGGATACT
TTTCGAGTTTATAAGAGTGGCTCAGAGGGTCCTGTCCTACTCCTTCTGCATGGAGGAGGC
CATTCTGCCCTTTCCTGGGCTGTGTTCACGGCAGCAATCATTAGCAGAGTTCAGTGTAGG
ATTGTGGCTTTGGATCTTCGAGGTCATGGTGAAACAAAAGTCAAGAATTCTGAAGACCTG
TCTGCAGAAACAATGGCAAAAGATGTGGGCAATGTGGTTGAAGCCATGTACGGGGACCTC
CCCCCTCCAATTATGCTGATTGGACATAGCATGGGCGGTGCTATTGCAGTCCACACAGCC
TCATCCAACCTGGTGCCAAGCCTCCTGGGTCTGTGCATGATTGATGTTGTGGAAGGTACA
GCCATGGATGCACTTAATAGCATGCAGAATTTCTTACGTGGTCGTCCTAAAACCTTCAAG
TCTTTGGAGAATGCCATTGAATGGAGTGTGAAGAGTGGCCAGATTCGAAATCTGGAGTCT
GCTCGAGTCTCAATGGTTGGCCAAGTCAAACAGTGTGAAGGAATTACAAGTCCAGAAGGC
TCAAAATCTATAGTGGAAGGAATCATAGAGGAGGAAGAAGAAGATGAAGAAGGAAGTGAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12848883|dbj|BAB28122.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12848883|dbj|BAB28122.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               492-658, - strand, RNAz p=0.699875

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               492-658, - strand, RNAz p=0.699875

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               1-203, gnl|bosTau2|chr15 (34086576-34086778)
               

               
               1-203, gnl|Hg17|chr11 (73560009-73560215)
               

               
               1-203, gnl|Mm7|chr7 (96418166-96417965)
               


               
               213-658, gnl|bosTau2|chr15 (34118619-34119064)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-203, gnl|bosTau2|chr15 (34086576-34086778)
               

               
               1-203, gnl|Hg17|chr11 (73560009-73560215)
               

               
               1-203, gnl|Mm7|chr7 (96418166-96417965)
               


               
               213-658, gnl|bosTau2|chr15 (34118619-34119064)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nca (0.136874)
               

               
               nmm (0.132802)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.136874)
               

               
               nmm (0.132802)

	1-203, gnl\|bosTau2\|chr15 (34086576-34086778)
	1-203, gnl\|Hg17\|chr11 (73560009-73560215)
	1-203, gnl\|Mm7\|chr7 (96418166-96417965)

	213-658, gnl\|bosTau2\|chr15 (34118619-34119064)