Non-Coding RNA Search

Ss1.1-Ova1-OVR010045A10.5

Sequence:


               
               GGGCTGCCTGCTCCATGGAGTCTCTGCACTTTAATCTTTGGACTGCCCATCACGCATGGT
CTGGTTTTGTAGGGAGGAGGGATGGCTGCCTGGAAGCAGAGCATGTGCGCTCTCCCCACC
CTGTCCCTGCCTGGTGGCCAGTGACCTGGCAAGGACGGGAGCACCCGGCGTGGGCCTGAG
GCCTCCTGGTGCCTAGAAAGGATCAGCGTGAAGGGGCCCGAATCTCCCCAGCCCCATCAC
CTTTTAAAATGTGAGTGGTTTTAAAAGGGAAAAACAATACTGAGCAACAGCACCAATCCT
CTCTTTTTAAACTAGTGTGACGACCATAGAGTGTCGTTGTCCTCTCTTCCGGCTATTTAT
CCCATTTCTTCTGTCCCTGCCGTGTCTGGGCCACGGTTCCTTCCAGCCCATGGTGGTTCC
TCCCTGAGTCTCTCCAAGCAGAATTCAGCCCTCTTCCCTTGCTCCTTCCCTCCCGGTGAC
CATAGCTTCCTGGGGCCTTCCTGTGGCCAGGGGCTGAGGACTGTGGCCTGGCTGGCTGGC
CAGCGTGGTGCTCCTCAGGACCCTGGCACTGAGACGTAACCTGACCTCCATGCAGGAACA
GGGCCCGCAACAGGGCAGGAACCCCCCCGCTCTGCACACAGAAACTCCAGCCAGCGGGCC
CTGCTGCATGAGGTGTCAGCCACCCTGTCAGACTAGCGGACCTGGCTGTGTCCTTCAGGT
TCAGCGTGTCTCCTAGACTGTGACTTGGGGCATCAGCTTGCTGCATGCGCCCATCCCCTT
CTTGAATGTACTCTGGTCTTAACAGCGTGCTACTGGCTCGCTCTTGCCTGGCCATCACTC
CGGCATTTCTATTGGCCACGCATAGCTCTGGATGGGTTGAAATTTCTGCCTCGAGATCTG
CGGTGTAAAGTGGGAGAAACTCCAGAAACCTTCCTTCAGTGTGGATCCAGAGGGCCAAGC
TTCTTTGGAATCAGAGTCCAGTGCTGAGCCGAAAAGCAGATGGACCCCCATCTCCTCCAC
AGGCGATAGACAGTAAGACCGGAGATCAGACACCATTGTTGAACTGTGGCTAGAAAGGGA
TGGTCATGTCCCTTGTCCTTCTTTGGCTAGACTGCCCCAGGATATCTGGACACGTGTGTG
TGGCTGGTGAAGGCAGCATCTGCACGTAAGTGAGCGGCTGCGTGGGGTTCACTGTGATGC
CAAAGTGTGTCCCTTGGTGACTCCAGCACTCTTCCAGACTCTTCTCCTGGGGAAGAAAGA
CTGCACGTGATACCTGAGCACAAAGCCAAGGAGCTAAATTAAGTCTTGTCTTGCTGTAAA
GTCCAAGTTCTTCCCCAGCAGACTTCCAGGGTGTGGCCAGCTCCCTTTGACCCTGGGTGT
CTGAGCGGGCAGACCAGGAGACCGGGCACAGAACACGCATGCCAAAGTGACCAGTCTTCT
CATGAGGACCCAGACATGACCCTGTGGACCATTCCACATGATTCGGAACCCACTTTTTAT
TAGGGCCCCATGCCTCTGGCCTTTCTTTCTCTTTTTCCCTGCCCTCCTGACACAGATAGT
TTGTCATATAAATTCCCCTGGTTGTGTTGTTTTTTTTTTTTTTCCTAGAAAAGAAAAATT
AAAAAGCAAAACAAAACAAAAAACCAGAAACCACAAATAAGAATGTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCTGCCTGCTCCATGGAGTCTCTGCACTTTAATCTTTGGACTGCCCATCACGCATGGT
CTGGTTTTGTAGGGAGGAGGGATGGCTGCCTGGAAGCAGAGCATGTGCGCTCTCCCCACC
CTGTCCCTGCCTGGTGGCCAGTGACCTGGCAAGGACGGGAGCACCCGGCGTGGGCCTGAG
GCCTCCTGGTGCCTAGAAAGGATCAGCGTGAAGGGGCCCGAATCTCCCCAGCCCCATCAC
CTTTTAAAATGTGAGTGGTTTTAAAAGGGAAAAACAATACTGAGCAACAGCACCAATCCT
CTCTTTTTAAACTAGTGTGACGACCATAGAGTGTCGTTGTCCTCTCTTCCGGCTATTTAT
CCCATTTCTTCTGTCCCTGCCGTGTCTGGGCCACGGTTCCTTCCAGCCCATGGTGGTTCC
TCCCTGAGTCTCTCCAAGCAGAATTCAGCCCTCTTCCCTTGCTCCTTCCCTCCCGGTGAC
CATAGCTTCCTGGGGCCTTCCTGTGGCCAGGGGCTGAGGACTGTGGCCTGGCTGGCTGGC
CAGCGTGGTGCTCCTCAGGACCCTGGCACTGAGACGTAACCTGACCTCCATGCAGGAACA
GGGCCCGCAACAGGGCAGGAACCCCCCCGCTCTGCACACAGAAACTCCAGCCAGCGGGCC
CTGCTGCATGAGGTGTCAGCCACCCTGTCAGACTAGCGGACCTGGCTGTGTCCTTCAGGT
TCAGCGTGTCTCCTAGACTGTGACTTGGGGCATCAGCTTGCTGCATGCGCCCATCCCCTT
CTTGAATGTACTCTGGTCTTAACAGCGTGCTACTGGCTCGCTCTTGCCTGGCCATCACTC
CGGCATTTCTATTGGCCACGCATAGCTCTGGATGGGTTGAAATTTCTGCCTCGAGATCTG
CGGTGTAAAGTGGGAGAAACTCCAGAAACCTTCCTTCAGTGTGGATCCAGAGGGCCAAGC
TTCTTTGGAATCAGAGTCCAGTGCTGAGCCGAAAAGCAGATGGACCCCCATCTCCTCCAC
AGGCGATAGACAGTAAGACCGGAGATCAGACACCATTGTTGAACTGTGGCTAGAAAGGGA
TGGTCATGTCCCTTGTCCTTCTTTGGCTAGACTGCCCCAGGATATCTGGACACGTGTGTG
TGGCTGGTGAAGGCAGCATCTGCACGTAAGTGAGCGGCTGCGTGGGGTTCACTGTGATGC
CAAAGTGTGTCCCTTGGTGACTCCAGCACTCTTCCAGACTCTTCTCCTGGGGAAGAAAGA
CTGCACGTGATACCTGAGCACAAAGCCAAGGAGCTAAATTAAGTCTTGTCTTGCTGTAAA
GTCCAAGTTCTTCCCCAGCAGACTTCCAGGGTGTGGCCAGCTCCCTTTGACCCTGGGTGT
CTGAGCGGGCAGACCAGGAGACCGGGCACAGAACACGCATGCCAAAGTGACCAGTCTTCT
CATGAGGACCCAGACATGACCCTGTGGACCATTCCACATGATTCGGAACCCACTTTTTAT
TAGGGCCCCATGCCTCTGGCCTTTCTTTCTCTTTTTCCCTGCCCTCCTGACACAGATAGT
TTGTCATATAAATTCCCCTGGTTGTGTTGTTTTTTTTTTTTTTCCTAGAAAAGAAAAATT
AAAAAGCAAAACAAAACAAAAAACCAGAAACCACAAATAAGAATGTAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               506-603, + strand, RNAz p=0.557499

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               506-603, + strand, RNAz p=0.557499

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC028575, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC028575, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1665, gnl|bosTau2|chr11 (1759199-1760826)
               

               
               1-1665, gnl|Hg17|chr2 (96340931-96339257)
               

               
               1-1665, gnl|Mm7|chr2 (126998595-127000232)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1665, gnl|bosTau2|chr11 (1759199-1760826)
               

               
               1-1665, gnl|Hg17|chr2 (96340931-96339257)
               

               
               1-1665, gnl|Mm7|chr2 (126998595-127000232)

Expressed library(ies): 18 entry(ies)

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Expressed library(ies): 18 entry(ies)

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               cov (0.396458)
               

               
               nlu (0.383362)
               

               
               fbs (0.350693)
               

               
               fhi (0.339155)
               

               
               nmm (0.265604)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               hea (0.204499)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               cly (0.120642)
               

               
               eru (0.120048)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.396458)
               

               
               nlu (0.383362)
               

               
               fbs (0.350693)
               

               
               fhi (0.339155)
               

               
               nmm (0.265604)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               hea (0.204499)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               cly (0.120642)
               

               
               eru (0.120048)

	1-1665, gnl\|bosTau2\|chr11 (1759199-1760826)
	1-1665, gnl\|Hg17\|chr2 (96340931-96339257)
	1-1665, gnl\|Mm7\|chr2 (126998595-127000232)

	cov (0.396458)
	nlu (0.383362)
	fbs (0.350693)
	fhi (0.339155)
	nmm (0.265604)
	ebs (0.236602)
	ece (0.229305)
	hea (0.204499)
	ton (0.1755)
	mcp (0.170648)
	eye (0.170503)
	cki (0.165235)
	nco (0.161734)
	csp (0.161186)
	hyp (0.142837)
	cst (0.140036)
	cly (0.120642)
	eru (0.120048)