Non-Coding RNA Search

Ss1.1-Ova1-OVR010045D09.5

Sequence:


               
               CCCACTTCACCGATATCCCTATTTCCTTAAGATTTTGATATTGTTCTAATGTGTAACAGA
ACCCTCCGAGTCCCCTTTGATCAGAAGGCTCTGAAGAGCAGCAGCACGGAATCGGGGAAC
ACAGGCACGCACGTGCAGCCCGGCCCACGCGTGCACGGGGACGCACACCTGCGGCCAGGC
CCAAGCACCAGTGCCCCGCACAAGCCTGGCTACTTACAGCCCTGCAGACATGCCAGGGGC
ATGGGCTGGTCCTGCTGAAAGCCCTTCAGGAAAAGCAGGGACTTCCCAGAGCCAGGGTCC
TCACAGAGGTTCACAGGGGCCCTGTTTCCCTGGCACGTGCTCCCTCTGCCAACCCCCTCC
TATGTGCCCAAGTCACTGGTGCAAACGTTTTTTTCTCCCTCATCCAAGCAGAGAAGTCAG
GGATTGTGTTAGGCGATGCGGGCAGCTCACCTGGGAGGAGGGGAGGCTGGGGGGCCAGAC
AGAGGCCTCCGAGGAGCCCTCTCCCACCTGGAGCCCTCTCCTGGAAGGGAGCAGATGGGT
CCCTCCAGCCCCACACCCGTGGGGAGACCCACCCTGGCCCCTGTGCGGTGGCCCAGGCAG
CGAGGGCTTCGGCAGCATCTCTGCTGCCTGATGGAGTGTAAGGCCCAAGGAGCACCCGCC
CCACCGCCCCGGTGCTGCTGCTCTTCCGACTCCTGCTGTGAGGAATGGGATTCTCGGCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCACTTCACCGATATCCCTATTTCCTTAAGATTTTGATATTGTTCTAATGTGTAACAGA
ACCCTCCGAGTCCCCTTTGATCAGAAGGCTCTGAAGAGCAGCAGCACGGAATCGGGGAAC
ACAGGCACGCACGTGCAGCCCGGCCCACGCGTGCACGGGGACGCACACCTGCGGCCAGGC
CCAAGCACCAGTGCCCCGCACAAGCCTGGCTACTTACAGCCCTGCAGACATGCCAGGGGC
ATGGGCTGGTCCTGCTGAAAGCCCTTCAGGAAAAGCAGGGACTTCCCAGAGCCAGGGTCC
TCACAGAGGTTCACAGGGGCCCTGTTTCCCTGGCACGTGCTCCCTCTGCCAACCCCCTCC
TATGTGCCCAAGTCACTGGTGCAAACGTTTTTTTCTCCCTCATCCAAGCAGAGAAGTCAG
GGATTGTGTTAGGCGATGCGGGCAGCTCACCTGGGAGGAGGGGAGGCTGGGGGGCCAGAC
AGAGGCCTCCGAGGAGCCCTCTCCCACCTGGAGCCCTCTCCTGGAAGGGAGCAGATGGGT
CCCTCCAGCCCCACACCCGTGGGGAGACCCACCCTGGCCCCTGTGCGGTGGCCCAGGCAG
CGAGGGCTTCGGCAGCATCTCTGCTGCCTGATGGAGTGTAAGGCCCAAGGAGCACCCGCC
CCACCGCCCCGGTGCTGCTGCTCTTCCGACTCCTGCTGTGAGGAATGGGATTCTCGGCTG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               283-388, - strand, RNAz p=0.996999
               

               
               449-618, - strand, RNAz p=0.951496

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               283-388, - strand, RNAz p=0.996999
               

               
               449-618, - strand, RNAz p=0.951496

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               471-632, - strand, RNAmicro p=0.999761
               

               
               416-496, + strand, RNAmicro p=0.999045

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               471-632, - strand, RNAmicro p=0.999761
               

               
               416-496, + strand, RNAmicro p=0.999045

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-718, gnl|bosTau2|chr15 (15489550-15488845)
               

               
               1-718, gnl|Hg17|chr11 (119037984-119037180)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-718, gnl|bosTau2|chr15 (15489550-15488845)
               

               
               1-718, gnl|Hg17|chr11 (119037984-119037180)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               ece (0.229305)
               

               
               fhi (0.169578)
               

               
               eli (0.151814)
               

               
               pla (0.133672)
               

               
               ebs (0.118301)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               fhi (0.169578)
               

               
               eli (0.151814)
               

               
               pla (0.133672)
               

               
               ebs (0.118301)

	283-388, - strand, RNAz p=0.996999
	449-618, - strand, RNAz p=0.951496

	471-632, - strand, RNAmicro p=0.999761
	416-496, + strand, RNAmicro p=0.999045

	1-718, gnl\|bosTau2\|chr15 (15489550-15488845)
	1-718, gnl\|Hg17\|chr11 (119037984-119037180)

	ece (0.229305)
	fhi (0.169578)
	eli (0.151814)
	pla (0.133672)
	ebs (0.118301)