Non-Coding RNA Search

Ss1.1-Ova1-OVR010045E07.5

Sequence:


               
               AGGAGAACCCGGAGCTCTTTTGTTTGGGGGTTTGGTGTTTTCACCCCCCCACGCTCACCC
CACCCCGCCCCACCCCACCCCCCCGCGCCTCTCCGGTTTCCTGAGCTGCGGGCTGCAAGG
GAGGAGAAGCGGCGTCTTGCTACCCCCTCGGCTGGGCCCCGGGGTAATTCGATGCGGGCC
TGGCGAGGCTCCCCACGCTAGACCCGGGCTCGCGTCTCGGCAGCCTCCACCCACCGGCCC
ACCCTACATTTATCTGCAGCTTCTGTTCAGGATCAATGTGACTCTGGAAACAAATGGATG
AATGAATATCCATATGAAGAGGAAAACAATAAAGAACATCGACACCTTTGAGAACAGAAT
GTTAATGCTTGATGGGATGCCGGCAGTCAGAGTCAAAACAGAGCTTTTGGAATCTGAACA
AGGGTCTCCAAACGTCCACAACTACCCCGATATGGAAGCTGTTCCCCTGTTGCTAAATAA
CGTGAAAGGGGAGCCCCCAGAGGACTCGTTATCCGTAGATCACTTCCAGACACAAACTGA
GCCAGTGGACTTGTCAATCAACAAAGCCAGGACATCCCCCACAGCCGTCTCATCCTCTCC
GGTTTCCATGACAGCGTCTGCCTCCTCACCTTCTTCAACTTCAACCTCTTCATCGTCTTC
TAGTCGTCCAGCCTCATCCCCCACTGTTATAACATCAGTATCTTCAGCATCGTCTTCGTC
CACAGTATTAACTCCAGGGCCCCTTGTTGCCTCTGCATCTGGTGTGGGAGGCCAGCAGTT
TTTGCACATTATCCACCCTGTACCGCCTTCAAGTCCCATGAATTTACAGTCTAACAAACT
GAGTCACGTTCACCGCATCCCCGTGGTGGTACAGTCGGTGCCTGTCGTCTACACAGCTGT
GCGGTCACCTGGAAATGTGAACAACACTATCGTAGTACCGCTTTTGGAGGATGGGAGGAG
CCATGGCAAAGCACAAATGGACCCCCGAGGCCTATCTCCCAGACAAAGTAAAAGTGACAG
TGATGATGATGACCTGCCAAATGTGACCTTAGATAGCGTTAATGAAACTGGATCTACGGC
CCTTTCCATAGCCAGAGCAGTACAAGAGGTACATCCGTCCCCAGTGTCCAGGGTCCGGGG
AAATCGAATGAATAATCAGAAGTTTGCTTGTTCAATCTCACCATTTAGTATTGAGAGCAC
AAGACGCCAGAGAAGGTCTGAATCCCCAGACTCCAGAAAGCGGCGTATCCACAGATGTGA
TTTTGAGGGATGTAACAAAGTCTACACAAAGAGTTCTCACCTGAAGGCTCATCGAAGGAC
GCACACAGGAGAGAAGCCCTACAAGTGTACCTGGGAAGGCTGCACCTGGAAGTTCGCTCG
CTCGGATGAACTGACGAGGCATTACCGCAAACACACGGGAGTGAAGCCATTCAAGTGCGC
GGACTGTGATCGCAGCTTTTCCCGGTCAGATCACCTGGCACTGCACCGCCGGAGGCACAT
GCTGGTGTGAGGAAGGCTACCTGTCCAGCTGAGCGTAAGAGCTGGATCTCTTCGTGGCAC
CCAATTCAGCAGGGCTGAATCCCCTTCACAGTGTTAACGCGAAAGGGCATCACCATCCCA
CGATGTCTGAAAGTCGAGCAGGAAAAAGAAGTTGTACCGCTTCTCCTTTCTGTCTGAAGG
TAACCCCATCATGACTACACGAGAAACGACTTCATGCGGGCCTGGGAGACCGGTGACACA
AAGGCTGAAGAGACAGGCATTGTTTTCCGTGCTGTGTACTCTGCCATTTAAAGATGTTTG
TAGTTTGTACATTTTCTGAGCTGTCAGACATGTTGTGATTGATACTTTAACAGGTCATCT
GCCACAAATGGATGGCTAGAGCAAGACCTTGTAATTTGGATGGCTCTCCCCTCATCCCAC
TCCCCGAGCCCCTTTTTACAAACGTTTTAGTTACTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGAGAACCCGGAGCTCTTTTGTTTGGGGGTTTGGTGTTTTCACCCCCCCACGCTCACCC
CACCCCGCCCCACCCCACCCCCCCGCGCCTCTCCGGTTTCCTGAGCTGCGGGCTGCAAGG
GAGGAGAAGCGGCGTCTTGCTACCCCCTCGGCTGGGCCCCGGGGTAATTCGATGCGGGCC
TGGCGAGGCTCCCCACGCTAGACCCGGGCTCGCGTCTCGGCAGCCTCCACCCACCGGCCC
ACCCTACATTTATCTGCAGCTTCTGTTCAGGATCAATGTGACTCTGGAAACAAATGGATG
AATGAATATCCATATGAAGAGGAAAACAATAAAGAACATCGACACCTTTGAGAACAGAAT
GTTAATGCTTGATGGGATGCCGGCAGTCAGAGTCAAAACAGAGCTTTTGGAATCTGAACA
AGGGTCTCCAAACGTCCACAACTACCCCGATATGGAAGCTGTTCCCCTGTTGCTAAATAA
CGTGAAAGGGGAGCCCCCAGAGGACTCGTTATCCGTAGATCACTTCCAGACACAAACTGA
GCCAGTGGACTTGTCAATCAACAAAGCCAGGACATCCCCCACAGCCGTCTCATCCTCTCC
GGTTTCCATGACAGCGTCTGCCTCCTCACCTTCTTCAACTTCAACCTCTTCATCGTCTTC
TAGTCGTCCAGCCTCATCCCCCACTGTTATAACATCAGTATCTTCAGCATCGTCTTCGTC
CACAGTATTAACTCCAGGGCCCCTTGTTGCCTCTGCATCTGGTGTGGGAGGCCAGCAGTT
TTTGCACATTATCCACCCTGTACCGCCTTCAAGTCCCATGAATTTACAGTCTAACAAACT
GAGTCACGTTCACCGCATCCCCGTGGTGGTACAGTCGGTGCCTGTCGTCTACACAGCTGT
GCGGTCACCTGGAAATGTGAACAACACTATCGTAGTACCGCTTTTGGAGGATGGGAGGAG
CCATGGCAAAGCACAAATGGACCCCCGAGGCCTATCTCCCAGACAAAGTAAAAGTGACAG
TGATGATGATGACCTGCCAAATGTGACCTTAGATAGCGTTAATGAAACTGGATCTACGGC
CCTTTCCATAGCCAGAGCAGTACAAGAGGTACATCCGTCCCCAGTGTCCAGGGTCCGGGG
AAATCGAATGAATAATCAGAAGTTTGCTTGTTCAATCTCACCATTTAGTATTGAGAGCAC
AAGACGCCAGAGAAGGTCTGAATCCCCAGACTCCAGAAAGCGGCGTATCCACAGATGTGA
TTTTGAGGGATGTAACAAAGTCTACACAAAGAGTTCTCACCTGAAGGCTCATCGAAGGAC
GCACACAGGAGAGAAGCCCTACAAGTGTACCTGGGAAGGCTGCACCTGGAAGTTCGCTCG
CTCGGATGAACTGACGAGGCATTACCGCAAACACACGGGAGTGAAGCCATTCAAGTGCGC
GGACTGTGATCGCAGCTTTTCCCGGTCAGATCACCTGGCACTGCACCGCCGGAGGCACAT
GCTGGTGTGAGGAAGGCTACCTGTCCAGCTGAGCGTAAGAGCTGGATCTCTTCGTGGCAC
CCAATTCAGCAGGGCTGAATCCCCTTCACAGTGTTAACGCGAAAGGGCATCACCATCCCA
CGATGTCTGAAAGTCGAGCAGGAAAAAGAAGTTGTACCGCTTCTCCTTTCTGTCTGAAGG
TAACCCCATCATGACTACACGAGAAACGACTTCATGCGGGCCTGGGAGACCGGTGACACA
AAGGCTGAAGAGACAGGCATTGTTTTCCGTGCTGTGTACTCTGCCATTTAAAGATGTTTG
TAGTTTGTACATTTTCTGAGCTGTCAGACATGTTGTGATTGATACTTTAACAGGTCATCT
GCCACAAATGGATGGCTAGAGCAAGACCTTGTAATTTGGATGGCTCTCCCCTCATCCCAC
TCCCCGAGCCCCTTTTTACAAACGTTTTAGTTACTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61841417|ref|XP_615856.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61841417|ref|XP_615856.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1564-1682, - strand, RNAz p=0.823174
               

               
               1851-1941, - strand, RNAz p=0.776059

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1564-1682, - strand, RNAz p=0.823174
               

               
               1851-1941, - strand, RNAz p=0.776059

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1326-1941, gnl|bosTau2|chr12 (24415740-24416358)
               

               
               1326-1941, gnl|Hg17|chr13 (73167812-73167204)
               

               
               1326-1941, gnl|Mm7|chr14 (94278928-94278277)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1326-1941, gnl|bosTau2|chr12 (24415740-24416358)
               

               
               1326-1941, gnl|Hg17|chr13 (73167812-73167204)
               

               
               1326-1941, gnl|Mm7|chr14 (94278928-94278277)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ldo (0.0970026)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ldo (0.0970026)

	1564-1682, - strand, RNAz p=0.823174
	1851-1941, - strand, RNAz p=0.776059

	1326-1941, gnl\|bosTau2\|chr12 (24415740-24416358)
	1326-1941, gnl\|Hg17\|chr13 (73167812-73167204)
	1326-1941, gnl\|Mm7\|chr14 (94278928-94278277)