Ss1.1-Ova1-OVR010045E09.5
|
CAGGCGGGGGTGGAGGGGCTGCCAGAGCCCAGGGGCCCTCCCACCTCCCAGTAGACTTTG
CACTTGCCCAGGCGCCGGGCCCACAGCTTGGGTCCCCGGAACTCCAGCTGCAGGCCGGGG
GCCACGTGCTGCAGCAGCTTCTCTGTGTAGTGGAGCTGCTTCTGGTCAGGCAGCTCAGCG
GGGCTGGGGAAGGCTACCTGCTGGGGCTCTGCAGCCGCGCCAGCCGGGCCCGGAGACCCG
TACAGGAGCACACAGCTGGGGCCCCCCACCATCTCCTGCAGCACCGTTCGACCTTTGTAC
ATGATGGTCAAGTCCAGGGCCTCCAAGCTGGGCCCTGCGTGCAGACCGAGCTGTGAGCAG
CTGGGACTGGCCGCGCCCCGCTCGCCTGCCATCCGCGTGCAGACACGGGGGTAGAGTGTG
GTGCAGGGCTCCGCCTCTTGGGGCTTCCAGGGCACCGGGGCTGGGAGTGGGCCTGCATAT
GGAACCTCGGGGGGGGTCAGATCCACGCCCCATGCAGCTTCCAGCAGATGGTCCTCCATG
CAGCTCTGCTGCAGAGCCTGGAGCAGGAGGTCCCCACCATCTCCAGCTGGGCTTGGGGTG
CAGGGTTCAGGGCTCGGCCTGGCCAGCTCGTGCCTCAGCCTCTCACCAGTATGTGCTGCC
AGGCGCGGCCCGGGAAGCTCACCCCTTGGGGGTGGGGCATCCTCGAGGGCCTCCTCTTCC
CCCGGGTTGAAGCCTGGGCCTTCTCCGCACCCCAGCTCGGGGTTGATCATATACACCTTA
TGAGGGTCAGTGGGGTCCCCTGAGTTGTCCTGCAACATCACGAAGCGCCGCGTGCTGTGC
AGGGCACAGCGGAAGTTGGTTTTCCAGGAGGCGCGGAGGGCACCCTCCGGGATCGGCTGC
GCACCTTCGCTGCTGCGGGGCGGCCACCTGCCGCGGGCCACGGCCCAGGCCTTAAAGATG
CGCGAGTCGGACTCGCCCAGGTCCTTTCGGGCGAAGTGCTTCCAGGGCACGCGGAACCGT
GTTCTGGCTTCATCCAGCCATCGCAGCCCTGCGTAACGGCCGCTGCTGACTTCGCCCAGA
AGCCAGTCTCCGAAGAGCACGCGTGGGCACCCCCTGTCAGGAGCCGCGGCCATTGCTCCC
TCTGCAAGGACTGGGCGTGGAGACACTGGCTTGGCCTCCGCGGCGAGAGCTCTGACCACG
GGGGCAGGCAGGTGTTAACCGCAGGTGAGAGGAGAGCTGCGCGTGTGTCACCACACACCA
CAGGTAGTGAGTGTGGCCAGGTGTCACGGGTGTTGGGGTCACAGATGGGGGTTGAGGGCT
CTGGCCACGACGTTGCCCAGGTGAGTCTTGGCCAAGGCGGCGATGGGCGTGACTGCAGAC
GTGGAGGGCGGGCGCACAGGGGCCACAGGTGTCGAGCTGGCGCCCGGGATGGGCCCTGAA
CCGGGAGCTGCCGGGGCAGGAAGTTTCGTCTCCCCGGGGGCTCGGGAG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CAGGCGGGGGTGGAGGGGCTGCCAGAGCCCAGGGGCCCTCCCACCTCCCAGTAGACTTTG
CACTTGCCCAGGCGCCGGGCCCACAGCTTGGGTCCCCGGAACTCCAGCTGCAGGCCGGGG
GCCACGTGCTGCAGCAGCTTCTCTGTGTAGTGGAGCTGCTTCTGGTCAGGCAGCTCAGCG
GGGCTGGGGAAGGCTACCTGCTGGGGCTCTGCAGCCGCGCCAGCCGGGCCCGGAGACCCG
TACAGGAGCACACAGCTGGGGCCCCCCACCATCTCCTGCAGCACCGTTCGACCTTTGTAC
ATGATGGTCAAGTCCAGGGCCTCCAAGCTGGGCCCTGCGTGCAGACCGAGCTGTGAGCAG
CTGGGACTGGCCGCGCCCCGCTCGCCTGCCATCCGCGTGCAGACACGGGGGTAGAGTGTG
GTGCAGGGCTCCGCCTCTTGGGGCTTCCAGGGCACCGGGGCTGGGAGTGGGCCTGCATAT
GGAACCTCGGGGGGGGTCAGATCCACGCCCCATGCAGCTTCCAGCAGATGGTCCTCCATG
CAGCTCTGCTGCAGAGCCTGGAGCAGGAGGTCCCCACCATCTCCAGCTGGGCTTGGGGTG
CAGGGTTCAGGGCTCGGCCTGGCCAGCTCGTGCCTCAGCCTCTCACCAGTATGTGCTGCC
AGGCGCGGCCCGGGAAGCTCACCCCTTGGGGGTGGGGCATCCTCGAGGGCCTCCTCTTCC
CCCGGGTTGAAGCCTGGGCCTTCTCCGCACCCCAGCTCGGGGTTGATCATATACACCTTA
TGAGGGTCAGTGGGGTCCCCTGAGTTGTCCTGCAACATCACGAAGCGCCGCGTGCTGTGC
AGGGCACAGCGGAAGTTGGTTTTCCAGGAGGCGCGGAGGGCACCCTCCGGGATCGGCTGC
GCACCTTCGCTGCTGCGGGGCGGCCACCTGCCGCGGGCCACGGCCCAGGCCTTAAAGATG
CGCGAGTCGGACTCGCCCAGGTCCTTTCGGGCGAAGTGCTTCCAGGGCACGCGGAACCGT
GTTCTGGCTTCATCCAGCCATCGCAGCCCTGCGTAACGGCCGCTGCTGACTTCGCCCAGA
AGCCAGTCTCCGAAGAGCACGCGTGGGCACCCCCTGTCAGGAGCCGCGGCCATTGCTCCC
TCTGCAAGGACTGGGCGTGGAGACACTGGCTTGGCCTCCGCGGCGAGAGCTCTGACCACG
GGGGCAGGCAGGTGTTAACCGCAGGTGAGAGGAGAGCTGCGCGTGTGTCACCACACACCA
CAGGTAGTGAGTGTGGCCAGGTGTCACGGGTGTTGGGGTCACAGATGGGGGTTGAGGGCT
CTGGCCACGACGTTGCCCAGGTGAGTCTTGGCCAAGGCGGCGATGGGCGTGACTGCAGAC
GTGGAGGGCGGGCGCACAGGGGCCACAGGTGTCGAGCTGGCGCCCGGGATGGGCCCTGAA
CCGGGAGCTGCCGGGGCAGGAAGTTTCGTCTCCCCGGGGGCTCGGGAG
|
|
gi|2098585|gb|AAB80690.1| |
Protein identifier
|
gi|2098585|gb|AAB80690.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
4-484, gnl|bosTau2|chr29 (45789369-45789848) |
|
4-484, gnl|Hg17|chr11 (603265-603877) |
| |
|
520-684, gnl|bosTau2|chr29 (45790162-45790317) |
|
520-684, gnl|dasNov1|scaffold_96189 (1380-990) |
|
520-684, gnl|hg17|chr11 (604204-604576) |
|
520-684, gnl|Hg17|chr11 (604242-604400) |
|
520-684, gnl|loxAfr1|scaffold_38162 (3142-2710) |
|
520-684, gnl|mm7|chr7 (137681743-137682093) |
|
520-684, gnl|Mm7|chr7 (137681784-137681919) |
|
520-684, gnl|monDom2|scaffold_105 (4066987-4066604) |
|
520-684, gnl|oryCun1|scaffold_167586 (6400-6699) |
|
520-684, gnl|panTro1|chr9 (670807-671179) |
|
520-684, gnl|rheMac2|chr14 (422227-422599) |
|
520-684, gnl|rn3|chr1 (201609158-201609479) |
| |
|
747-952, gnl|bosTau2|chr29 (45790713-45790918) |
|
747-952, gnl|Hg17|chr11 (604801-605009) |
|
747-952, gnl|Mm7|chr7 (137682342-137682556) |
| |
|
1113-1437, gnl|bosTau2|chr29 (45791243-45791541) |
|
1113-1437, gnl|Hg17|chr11 (605344-605649) |
|
1113-1437, gnl|Mm7|chr7 (137682883-137683309) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
4-484, gnl|bosTau2|chr29 (45789369-45789848) |
|
4-484, gnl|Hg17|chr11 (603265-603877) |
| |
|
520-684, gnl|bosTau2|chr29 (45790162-45790317) |
|
520-684, gnl|dasNov1|scaffold_96189 (1380-990) |
|
520-684, gnl|hg17|chr11 (604204-604576) |
|
520-684, gnl|Hg17|chr11 (604242-604400) |
|
520-684, gnl|loxAfr1|scaffold_38162 (3142-2710) |
|
520-684, gnl|mm7|chr7 (137681743-137682093) |
|
520-684, gnl|Mm7|chr7 (137681784-137681919) |
|
520-684, gnl|monDom2|scaffold_105 (4066987-4066604) |
|
520-684, gnl|oryCun1|scaffold_167586 (6400-6699) |
|
520-684, gnl|panTro1|chr9 (670807-671179) |
|
520-684, gnl|rheMac2|chr14 (422227-422599) |
|
520-684, gnl|rn3|chr1 (201609158-201609479) |
| |
|
747-952, gnl|bosTau2|chr29 (45790713-45790918) |
|
747-952, gnl|Hg17|chr11 (604801-605009) |
|
747-952, gnl|Mm7|chr7 (137682342-137682556) |
| |
|
1113-1437, gnl|bosTau2|chr29 (45791243-45791541) |
|
1113-1437, gnl|Hg17|chr11 (605344-605649) |
|
1113-1437, gnl|Mm7|chr7 (137682883-137683309) |
|
cag (0.302389) |
|
nje (0.16592) |
|
hyp (0.142837) |
|
jca (0.11396) |
|
cty (0.10408) |
|
jej (0.0989218) |
|
cag (0.302389) |
|
nje (0.16592) |
|
hyp (0.142837) |
|
jca (0.11396) |
|
cty (0.10408) |
|
jej (0.0989218) |
