Non-Coding RNA Search

Ss1.1-Ova1-OVR010045F11.5

Sequence:


               
               AGAAAGAAGCTAGGAACCGGGGGGCAACGAGCTGGAAGAGCCAGGCAGCGAGAGCCAAGC
CGGGAGAAGAGAGCGCGGCAGGAACCGGCCGGGAGCCAGAGCCACCCAGGCACCTGGTCG
TCCTCTCAACCGATTGGCGCTCGCAGAGTGGCCCTCAGGCCCCCGCCCGGTCCCGGTCCC
CCTCCCCGGGCCCCCCATGGCCCGGGCCGCAGCCCTCCCGCCGTCAAGATTGTCGCCGCC
GACGCTGCCGCTACTGCCGTTGCTGCTACTACTGCTCCGGGAAACCCGAGCCCAAGATGT
GCGAGTTCGGGTGGCAGCTGAGGTGCGGGGCCACCTGGGGGACACCGTAGAGTTGCCGTG
CCACCTGCTGCCCCCAGCACCTGAAGTCCGAGTGTCACAGGTGACCTGGCTGCGCCTGGA
CACGCCCGAGGACAACCAAAACGTGGCCATCTTCCACCCTCAGTACGGTCCCAGCTTCCC
TAGAGCGAAGCCTGGCAAGGAGCGGCTGTCCTTCGTCAAACCCGGGCAGAGCACTGGTTC
CGGGCCGGGAACGGAGGTGGAGGTGCGCGATGCCACGCTGGCCCTCCGGGGGCTGACGGT
GGAGGACGAGGGCAATTACACCTGCGAGTTTGCCACCTTCCCCCAGGGCACCAGTCGGGG
GGTGACCTGGCTCAGAGTTATAGCCGAGCCCCAGAACCACGCCGAGACCCAGGAGGTCAC
CCTCAGCCTGGAGCCCGTCCCTGTGGCCCGCTGTGTGTCTGCAGGTGGCCGGCCCCCCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAAGAAGCTAGGAACCGGGGGGCAACGAGCTGGAAGAGCCAGGCAGCGAGAGCCAAGC
CGGGAGAAGAGAGCGCGGCAGGAACCGGCCGGGAGCCAGAGCCACCCAGGCACCTGGTCG
TCCTCTCAACCGATTGGCGCTCGCAGAGTGGCCCTCAGGCCCCCGCCCGGTCCCGGTCCC
CCTCCCCGGGCCCCCCATGGCCCGGGCCGCAGCCCTCCCGCCGTCAAGATTGTCGCCGCC
GACGCTGCCGCTACTGCCGTTGCTGCTACTACTGCTCCGGGAAACCCGAGCCCAAGATGT
GCGAGTTCGGGTGGCAGCTGAGGTGCGGGGCCACCTGGGGGACACCGTAGAGTTGCCGTG
CCACCTGCTGCCCCCAGCACCTGAAGTCCGAGTGTCACAGGTGACCTGGCTGCGCCTGGA
CACGCCCGAGGACAACCAAAACGTGGCCATCTTCCACCCTCAGTACGGTCCCAGCTTCCC
TAGAGCGAAGCCTGGCAAGGAGCGGCTGTCCTTCGTCAAACCCGGGCAGAGCACTGGTTC
CGGGCCGGGAACGGAGGTGGAGGTGCGCGATGCCACGCTGGCCCTCCGGGGGCTGACGGT
GGAGGACGAGGGCAATTACACCTGCGAGTTTGCCACCTTCCCCCAGGGCACCAGTCGGGG
GGTGACCTGGCTCAGAGTTATAGCCGAGCCCCAGAACCACGCCGAGACCCAGGAGGTCAC
CCTCAGCCTGGAGCCCGTCCCTGTGGCCCGCTGTGTGTCTGCAGGTGGCCGGCCCCCCGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26106063|dbj|BAC41512.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26106063|dbj|BAC41512.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-286, gnl|bosTau2|chr18 (38932682-38932401)
               

               
               1-286, gnl|Hg17|chr19 (50041419-50041709)
               

               
               1-286, gnl|Mm7|chr7 (17431885-17431590)
               


               
               288-689, gnl|bosTau2|chr18 (38919191-38918790)
               

               
               288-689, gnl|Hg17|chr19 (50060368-50060763)
               

               
               288-689, gnl|Mm7|chr7 (17420748-17420380)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-286, gnl|bosTau2|chr18 (38932682-38932401)
               

               
               1-286, gnl|Hg17|chr19 (50041419-50041709)
               

               
               1-286, gnl|Mm7|chr7 (17431885-17431590)
               


               
               288-689, gnl|bosTau2|chr18 (38919191-38918790)
               

               
               288-689, gnl|Hg17|chr19 (50060368-50060763)
               

               
               288-689, gnl|Mm7|chr7 (17420748-17420380)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eru (0.120048)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)

	1-286, gnl\|bosTau2\|chr18 (38932682-38932401)
	1-286, gnl\|Hg17\|chr19 (50041419-50041709)
	1-286, gnl\|Mm7\|chr7 (17431885-17431590)

	288-689, gnl\|bosTau2\|chr18 (38919191-38918790)
	288-689, gnl\|Hg17\|chr19 (50060368-50060763)
	288-689, gnl\|Mm7\|chr7 (17420748-17420380)