Ss1.1-Ova1-OVR010045G03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGACGTTGCTGAAAGGGAAGTTGGCCCAGCGGCTGCTGAGCTCGGCTGCTGCGCGGATGT GCTGGGTCAGTTTGGAGCGGGTGGAGGCCGCCGCGGGGCTCTAGGAAGATGTTACCAAGT ACTTCAGTGAATTCCCTATCCCAGGGGAATGGAGCACTGAATTCCAGGGATGCAGCGAGG CACACAGCTGGAGCAAAACGCTACAAATACCTGCGCAGGCTTTTTCGTTTTCGGCAAATG GACTTTGAGTTTGCAGCCTGGCAAATGCTCTACCTGTTCACGTCCCCACAGAGAGTTTAC AGAAACTTCCATTACCGAAAGCAGACAAAGGATCAGTGGGCCAGAGATGACCCTGCTTTC TTGGTCCTATTAAGTATCTGGCTCTGTGTGTCCACTATAGGATTTGGCTTTGTGCTGGAC ATGGGATTTTTTGAGACAATAAAGCTGCTCCTTTGGGTTGTGTTCATAGACTGCGTAGGC GTCGGTCTGCTCATATCAACGTTAATGTGGTTTATCTCTAACAAGTATTTAGTGAAACGG CAGAGCAGAGACTATGATGTGGAGTGGGGCTATGCCTTCGATGTGCATCTGAATGCTTTT TATCCTCTCCTCGTCATTCTTCATTTTATCCAGCTTTTTTTCATCAACCATGTTATCCTA ACAGACACGTTCATTGGCTATTTAGTTGGAAATACCTTATGGCTGGTTGCAGTTGGCTAT TATATCTATGTGACTTTCCTAGGATACAGTGCACTGCCATTTTTGAAAAACACAGTGATT CTTCTCTACCCATTTGCACCTCTCATCCTGCTCTATGGACTGTCACTAGCACTGGGCTGG AATTTCACCCACATGCTGTGCTCCTTCTACAAGTACAGAGTGAAGTGAAACCGTGAGCTG CTTACACCTTCCCTGCATCAGCAGTATTGGGGGGGGTGATGATTTCTTGTGCAACATGTA AATAAATGATCATTGTAGATATCTTAAAGGTGTAAAGTTTAAAGATTTGAAGAAATACAT ATGTTAACACTGTGTTGAGTACATTCCTTAAAACAAATGTACATTTCTATAATAAATATT TTTCAAACTAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGACGTTGCTGAAAGGGAAGTTGGCCCAGCGGCTGCTGAGCTCGGCTGCTGCGCGGATGT GCTGGGTCAGTTTGGAGCGGGTGGAGGCCGCCGCGGGGCTCTAGGAAGATGTTACCAAGT ACTTCAGTGAATTCCCTATCCCAGGGGAATGGAGCACTGAATTCCAGGGATGCAGCGAGG CACACAGCTGGAGCAAAACGCTACAAATACCTGCGCAGGCTTTTTCGTTTTCGGCAAATG GACTTTGAGTTTGCAGCCTGGCAAATGCTCTACCTGTTCACGTCCCCACAGAGAGTTTAC AGAAACTTCCATTACCGAAAGCAGACAAAGGATCAGTGGGCCAGAGATGACCCTGCTTTC TTGGTCCTATTAAGTATCTGGCTCTGTGTGTCCACTATAGGATTTGGCTTTGTGCTGGAC ATGGGATTTTTTGAGACAATAAAGCTGCTCCTTTGGGTTGTGTTCATAGACTGCGTAGGC GTCGGTCTGCTCATATCAACGTTAATGTGGTTTATCTCTAACAAGTATTTAGTGAAACGG CAGAGCAGAGACTATGATGTGGAGTGGGGCTATGCCTTCGATGTGCATCTGAATGCTTTT TATCCTCTCCTCGTCATTCTTCATTTTATCCAGCTTTTTTTCATCAACCATGTTATCCTA ACAGACACGTTCATTGGCTATTTAGTTGGAAATACCTTATGGCTGGTTGCAGTTGGCTAT TATATCTATGTGACTTTCCTAGGATACAGTGCACTGCCATTTTTGAAAAACACAGTGATT CTTCTCTACCCATTTGCACCTCTCATCCTGCTCTATGGACTGTCACTAGCACTGGGCTGG AATTTCACCCACATGCTGTGCTCCTTCTACAAGTACAGAGTGAAGTGAAACCGTGAGCTG CTTACACCTTCCCTGCATCAGCAGTATTGGGGGGGGTGATGATTTCTTGTGCAACATGTA AATAAATGATCATTGTAGATATCTTAAAGGTGTAAAGTTTAAAGATTTGAAGAAATACAT ATGTTAACACTGTGTTGAGTACATTCCTTAAAACAAATGTACATTTCTATAATAAATATT TTTCAAACTAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 100-388, gnl|bosTau2|chr11 (4009586-4009298) | |
| 100-388, gnl|Hg17|chr2 (98684732-98685020) | |
| 100-388, gnl|Mm7|chr1 (37672669-37672957) | |
| 509-649, gnl|bosTau2|chr11 (4004080-4003940) | |
| 509-649, gnl|canFam2|chr10 (47182544-47182367) | |
| 509-649, gnl|danRer3|chr9 (42922819-42922992) | |
| 509-649, gnl|dasNov1|scaffold_7579 (9758-9927) | |
| 509-649, gnl|echTel1|scaffold_300865 (5428-5255) | |
| 509-649, gnl|fr1|chrUn (245928034-245928199) | |
| 509-649, gnl|galGal2|chr1 (125340346-125340509) | |
| 509-649, gnl|hg17|chr2 (98691187-98691359) | |
| 509-649, gnl|Hg17|chr2 (98691187-98691327) | |
| 509-649, gnl|loxAfr1|scaffold_14546 (8284-8111) | |
| 509-649, gnl|mm7|chr1 (37678542-37678711) | |
| 509-649, gnl|Mm7|chr1 (37678542-37678682) | |
| 509-649, gnl|monDom2|scaffold_11 (14456892-14457069) | |
| 509-649, gnl|oryCun1|scaffold_201464 (33959-33784) | |
| 509-649, gnl|panTro1|chr12 (101401547-101401719) | |
| 509-649, gnl|rheMac2|chr13 (98506234-98506406) | |
| 509-649, gnl|rn3|chr9 (36383310-36383480) | |
| 509-649, gnl|tetNig1|chr3 (1827086-1827258) | |
| 509-649, gnl|xenTro1|scaffold_798 (427422-427246) | |
| 751-1092, gnl|bosTau2|chr11 (4002377-4002043) | |
| 751-1092, gnl|canFam2|chr10 (47181392-47181190) | |
| 751-1092, gnl|danRer3|chr19 (60849366-60849099) | |
| 751-1092, gnl|echTel1|scaffold_300865 (3597-3361) | |
| 751-1092, gnl|fr1|chrUn (245929431-245929624) | |
| 751-1092, gnl|galGal2|chr1 (125341080-125341332) | |
| 751-1092, gnl|hg17|chr2 (98693124-98693362) | |
| 751-1092, gnl|Hg17|chr2 (98693148-98693496) | |
| 751-1092, gnl|loxAfr1|scaffold_14546 (6380-6142) | |
| 751-1092, gnl|mm7|chr1 (37680044-37680249) | |
| 751-1092, gnl|Mm7|chr1 (37680062-37680368) | |
| 751-1092, gnl|monDom2|scaffold_11 (14461975-14462205) | |
| 751-1092, gnl|oryCun1|scaffold_201464 (33167-32935) | |
| 751-1092, gnl|panTro1|chr12 (101403490-101403725) | |
| 751-1092, gnl|rheMac2|chr13 (98508150-98508388) | |
| 751-1092, gnl|rn3|chr9 (36384625-36384833) | |
| 751-1092, gnl|xenTro1|scaffold_798 (424666-424446) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 100-388, gnl|bosTau2|chr11 (4009586-4009298) | |
| 100-388, gnl|Hg17|chr2 (98684732-98685020) | |
| 100-388, gnl|Mm7|chr1 (37672669-37672957) | |
| 509-649, gnl|bosTau2|chr11 (4004080-4003940) | |
| 509-649, gnl|canFam2|chr10 (47182544-47182367) | |
| 509-649, gnl|danRer3|chr9 (42922819-42922992) | |
| 509-649, gnl|dasNov1|scaffold_7579 (9758-9927) | |
| 509-649, gnl|echTel1|scaffold_300865 (5428-5255) | |
| 509-649, gnl|fr1|chrUn (245928034-245928199) | |
| 509-649, gnl|galGal2|chr1 (125340346-125340509) | |
| 509-649, gnl|hg17|chr2 (98691187-98691359) | |
| 509-649, gnl|Hg17|chr2 (98691187-98691327) | |
| 509-649, gnl|loxAfr1|scaffold_14546 (8284-8111) | |
| 509-649, gnl|mm7|chr1 (37678542-37678711) | |
| 509-649, gnl|Mm7|chr1 (37678542-37678682) | |
| 509-649, gnl|monDom2|scaffold_11 (14456892-14457069) | |
| 509-649, gnl|oryCun1|scaffold_201464 (33959-33784) | |
| 509-649, gnl|panTro1|chr12 (101401547-101401719) | |
| 509-649, gnl|rheMac2|chr13 (98506234-98506406) | |
| 509-649, gnl|rn3|chr9 (36383310-36383480) | |
| 509-649, gnl|tetNig1|chr3 (1827086-1827258) | |
| 509-649, gnl|xenTro1|scaffold_798 (427422-427246) | |
| 751-1092, gnl|bosTau2|chr11 (4002377-4002043) | |
| 751-1092, gnl|canFam2|chr10 (47181392-47181190) | |
| 751-1092, gnl|danRer3|chr19 (60849366-60849099) | |
| 751-1092, gnl|echTel1|scaffold_300865 (3597-3361) | |
| 751-1092, gnl|fr1|chrUn (245929431-245929624) | |
| 751-1092, gnl|galGal2|chr1 (125341080-125341332) | |
| 751-1092, gnl|hg17|chr2 (98693124-98693362) | |
| 751-1092, gnl|Hg17|chr2 (98693148-98693496) | |
| 751-1092, gnl|loxAfr1|scaffold_14546 (6380-6142) | |
| 751-1092, gnl|mm7|chr1 (37680044-37680249) | |
| 751-1092, gnl|Mm7|chr1 (37680062-37680368) | |
| 751-1092, gnl|monDom2|scaffold_11 (14461975-14462205) | |
| 751-1092, gnl|oryCun1|scaffold_201464 (33167-32935) | |
| 751-1092, gnl|panTro1|chr12 (101403490-101403725) | |
| 751-1092, gnl|rheMac2|chr13 (98508150-98508388) | |
| 751-1092, gnl|rn3|chr9 (36384625-36384833) | |
| 751-1092, gnl|xenTro1|scaffold_798 (424666-424446) |
| Expressed library(ies): 33 entry(ies) | More info |
| Expressed library(ies): 33 entry(ies) | Help | Less info |
| gul (0.532765) | |
| nje (0.49776) | |
| hea (0.408998) | |
| pla (0.401016) | |
| elu (0.385356) | |
| cut (0.339847) | |
| sme (0.305437) | |
| lin (0.291206) | |
| fce (0.271592) | |
| ova (0.258264) | |
| sug (0.254582) | |
| thg (0.253582) | |
| eru (0.240096) | |
| cbe (0.239234) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| eje (0.197668) | |
| col (0.195008) | |
| sto (0.179824) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| nco (0.161734) | |
| mga (0.160205) | |
| lun (0.150489) | |
| fat (0.147427) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| cbr (0.127975) | |
| med (0.116252) | |
| jca (0.11396) |
| Expressed library(ies): 33 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| gul (0.532765) | |
| nje (0.49776) | |
| hea (0.408998) | |
| pla (0.401016) | |
| elu (0.385356) | |
| cut (0.339847) | |
| sme (0.305437) | |
| lin (0.291206) | |
| fce (0.271592) | |
| ova (0.258264) | |
| sug (0.254582) | |
| thg (0.253582) | |
| eru (0.240096) | |
| cbe (0.239234) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| eje (0.197668) | |
| col (0.195008) | |
| sto (0.179824) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| nco (0.161734) | |
| mga (0.160205) | |
| lun (0.150489) | |
| fat (0.147427) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| cbr (0.127975) | |
| med (0.116252) | |
| jca (0.11396) |