Non-Coding RNA Search

Ss1.1-Ova1-OVR010045H01.5

Sequence:


               
               ATCTCACCAGTGGCCCCAAGGCTCCCTTTCACTTTTGGTCCTTCCAAGTTCAAGTCCACA
TCTGGGGCTGAGATTGGAGGGCCGGAGAGCTGAGGCCCTTTCAGGTTCAGGCCGGGCCCC
TTTAGTTCTCCCGTGACCTGTGGCCCCTTGAGATTGATGTCCAAGTCGGACCCCGGAGCA
GAGATGCCGAACTGGGGCAGCTTCATCTTGGGAAGTTTAATACCACCTTCAGGTGCCTCC
AAGCTTAGGTCAGGAGCACCTACTGATACTTTAGGGCACTTGATGTCACCAGAGACGGCC
AGGTCCCCCTGCAGGCTTGGTCCCTTCAGGGTCACATCTGGCGCACCGACCTCAAGCGTT
CCTGTGCCACCAAGTCCAGGCACTCTCACCCCGTCACCTTCCACCTTCACCTGTCCGCCC
ACACCTCTGAGGTCAAACCCAGGGGTGTGCACCTTCATGCTGGGAACAGACGCATCCAGG
TCTCCCTTCAAACTTGGTCCTTTCAAGTTCAGGTCAAGGTCAGGTCCAGAGACTTTTGGC
ATAGAGAGGTTCACTGAAGGCAAATCGACTTTTGGCCCCTTTAGGGACACATCAGGCCCT
TCGAGCTTAACATCGGGCATGCTCAAGCCTCCTTCAAGAGAGGGCAGCTGCACCTCGGCT
CCCCCACCCTCCGCTTTCACACCAGGGACGCCGATCTTGGGCATCGAAAACTTGGGGAAC
TTAATTTTCGAATCTGGACCTTGCAGATCTACGTCTGGTCCTTCCAGTCCCACAGTGGGG
ACACCACCCTTTATCTTTGGTCCCTTCAAGCTAACGTTCACATCAGGGACGGAGACTTGA
GGGCCAGAGATGCCGAATGTCGGTGCTTTGATTGTAGCATCTGGGCCTTCAAGGTTGATG
CCAGGTGCATCCAAGTTTGCCTGCACCCTGGGGCCTTTCAAGTCGCCTTCTATTTTTGGC
CCTGAAACATCCACGCCTGGTACCTTGAACTTGGGAGCCTTCAGCTTAACGTCAGGACCT
TCCACATGAACCCCTGGGGCAGAAATGTCCAGATCGGGTGCCTGGATGTCACCCCCTAGT
TTGGGGCTAGGGAGGGAAGCCTCAGCTTTAAATTTAGGTGATTTAATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCTCACCAGTGGCCCCAAGGCTCCCTTTCACTTTTGGTCCTTCCAAGTTCAAGTCCACA
TCTGGGGCTGAGATTGGAGGGCCGGAGAGCTGAGGCCCTTTCAGGTTCAGGCCGGGCCCC
TTTAGTTCTCCCGTGACCTGTGGCCCCTTGAGATTGATGTCCAAGTCGGACCCCGGAGCA
GAGATGCCGAACTGGGGCAGCTTCATCTTGGGAAGTTTAATACCACCTTCAGGTGCCTCC
AAGCTTAGGTCAGGAGCACCTACTGATACTTTAGGGCACTTGATGTCACCAGAGACGGCC
AGGTCCCCCTGCAGGCTTGGTCCCTTCAGGGTCACATCTGGCGCACCGACCTCAAGCGTT
CCTGTGCCACCAAGTCCAGGCACTCTCACCCCGTCACCTTCCACCTTCACCTGTCCGCCC
ACACCTCTGAGGTCAAACCCAGGGGTGTGCACCTTCATGCTGGGAACAGACGCATCCAGG
TCTCCCTTCAAACTTGGTCCTTTCAAGTTCAGGTCAAGGTCAGGTCCAGAGACTTTTGGC
ATAGAGAGGTTCACTGAAGGCAAATCGACTTTTGGCCCCTTTAGGGACACATCAGGCCCT
TCGAGCTTAACATCGGGCATGCTCAAGCCTCCTTCAAGAGAGGGCAGCTGCACCTCGGCT
CCCCCACCCTCCGCTTTCACACCAGGGACGCCGATCTTGGGCATCGAAAACTTGGGGAAC
TTAATTTTCGAATCTGGACCTTGCAGATCTACGTCTGGTCCTTCCAGTCCCACAGTGGGG
ACACCACCCTTTATCTTTGGTCCCTTCAAGCTAACGTTCACATCAGGGACGGAGACTTGA
GGGCCAGAGATGCCGAATGTCGGTGCTTTGATTGTAGCATCTGGGCCTTCAAGGTTGATG
CCAGGTGCATCCAAGTTTGCCTGCACCCTGGGGCCTTTCAAGTCGCCTTCTATTTTTGGC
CCTGAAACATCCACGCCTGGTACCTTGAACTTGGGAGCCTTCAGCTTAACGTCAGGACCT
TCCACATGAACCCCTGGGGCAGAAATGTCCAGATCGGGTGCCTGGATGTCACCCCCTAGT
TTGGGGCTAGGGAGGGAAGCCTCAGCTTTAAATTTAGGTGATTTAATG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               219-378, - strand, RNAz p=0.533732
               

               
               619-972, + strand, RNAz p=0.965811

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               219-378, - strand, RNAz p=0.533732
               

               
               619-972, + strand, RNAz p=0.965811

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1128, gnl|bosTau2|chr29 (31985257-31986405)
               

               
               1-1128, gnl|Hg17|chr11 (62042053-62043177)
               

               
               1-1128, gnl|Mm7|chr19 (8697267-8696143)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1128, gnl|bosTau2|chr29 (31985257-31986405)
               

               
               1-1128, gnl|Hg17|chr11 (62042053-62043177)
               

               
               1-1128, gnl|Mm7|chr19 (8697267-8696143)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jca (0.11396)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.11396)

	219-378, - strand, RNAz p=0.533732
	619-972, + strand, RNAz p=0.965811

	1-1128, gnl\|bosTau2\|chr29 (31985257-31986405)
	1-1128, gnl\|Hg17\|chr11 (62042053-62043177)
	1-1128, gnl\|Mm7\|chr19 (8697267-8696143)