Ss1.1-Ova1-OVR010046C06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCCAGCCGCGGTGATATGGGCGGGGGCGGCGGCAGGCCTCCCGCGCAGCCGCGATGCTGC GCTCCCGGGCCGAGGCGGCGATGACCGCGGCGGACAGGGCCATCCAGCGCTTCCTGCGGA CCGGGGCGGCGGTCAGATACAAAGTCATGAAGAACTGGGGTGTTATAGGTGGAATTGCTG CTGCCCTGGCAGCAGGAATATATGTTATTTGGGGCCCCATTACGGAGAGAAAGAAGAGGA GAAAAGGGCTTGTGCCTGGCCTTGTCAACTTGGGGAACACCTGCTTCATGAACTCTCTGC TGCAAGGCTTGTCAGCCTGCCCCACTTTCATCAAGTGGCTGGAAGAATTCACCACCCAGT ACACCAGGGATCAGAAGGAGCCCCCCCAGCACCAGTACTTATCCTTGACCCTGTTGCACC TCCTGAAAGCTTTATCCTGCCAGGAAGTCACTGACGAGGAGGTCTTGGATGCAAGCTGCT TGTTGGACGTCTTAAGAATGTACAGATGGCAGATCTCGTCGTTTGAAGAACAGGATGCTC ATGAGTTGTTCCACGTCATCACCTCGTCCCTGGAGGATGAGCGGGACCACCAGCCCCGGG TCACTCATTTGTTTGACGTGCACTCCCTGGAGCAACAGCCAGAAATTACTCCCAGACAGA TAACCTGCCGCACCAGAGGGTCACCTCATCCCATGTTCAATCACTGGAAGTCTCAGCATC CTTTTCATGGAAGACTTACGAGTAACATGGTCTGCAAACACTGTGAGCACCAGAGCCCTG TTCGATTTGATACCTTTGATAGCCTTTCACTAAGTATTCCAGCTGCCACATGGGGTCATC CACTGACCCTGGACCACTGCCTTCACCACTTCATCTCGTCGGAATCAGTGCGAGATGTCG TATGTGACAACTGTACGAAGATTGAAGCAAAAGGGACGCTGAATGGGGAGAAGGTGGAAC ATCAGAGGACCACGTTTGTCAAACAGCTGAAACTAGGGAAGCTCCCCCAGTGCCTGTGCA TCCACCTCCAGCGGCTGAGCTGGTCTAGCCACGGCACGCCCCTGAAGCGGCACGAGCATG TGCAGTTCAGTGAGTTCCTGATGATGGATATCTACAAATATCACCTCCTTGGACACAAGC CGGGGCCCCGGGGCCCCGAGCCCTGCAGGAAGGCAGGGCCCGCATTGGAAGTGCAGGACG GGCCGGCAGCCCCTAAGTCAGTTCGGAGCCAGCCGGGGGGCCCCAAAACACAGATGCTCA TGAATGGCGCCTGTTCCCCACCCTTCCTGCCCACCCTGCCAGCCCCGGTGCCCTTCCCAC TCCCAGCTGTTCCTGACCACAGCTCCTCCGCGTACCTCTTCCAGCTGATGGCTGTTGTTG TTCACCATGGAGACATGCATTCTGGACACTTTGTGACTTACCGACGGTCCCCTCCTTCAG CCAAGAACCCTCTCTCCACCAGCAACCAGTGGCTGTGGATTTCTGATGACACTGTCCGCA AGGCCAGCCTGCAGGAGGTCCTGTCCTCCAGTGCCTACCTGCTGTTTTACGAGCGCGTCC TTTCCAAGATGCAGCACCAGAATCGGGAGTACAAGTCTGAAGAATGACTCTGCCCTGGCC CCAAAGCAAGAGCTGATGGCACTGTCCAAACTCTGTGTGTGTGTATGTGTGTGTGTGTGT GTGTGTGTGTGCGCGCGCGCGCACAAGCAGCCCCACTAGAGTCCTACAGCCTTCTGGTGT GTTCTAAGCGCAGCGGTGCCGGGGTAGGAAAGCAGGCATTATGTCTAGAGCGTCTTGTGA CTCACCTGATACAGGTAATTAAAAGAAACCAGACTCCGAAAGCCACCTTTTCTATATTCT GATACGTTAGGTGTTCTCAGAGGGGAGTTAACTTTGTGTGATCCTCTGAGCTTTCAGCAT AGATCTTTTATTTTTAATAAGCAGGCCCATTAAAAAATGGTTGAATTAGTGAAGTTATTA AAGGCAACAGTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCCAGCCGCGGTGATATGGGCGGGGGCGGCGGCAGGCCTCCCGCGCAGCCGCGATGCTGC GCTCCCGGGCCGAGGCGGCGATGACCGCGGCGGACAGGGCCATCCAGCGCTTCCTGCGGA CCGGGGCGGCGGTCAGATACAAAGTCATGAAGAACTGGGGTGTTATAGGTGGAATTGCTG CTGCCCTGGCAGCAGGAATATATGTTATTTGGGGCCCCATTACGGAGAGAAAGAAGAGGA GAAAAGGGCTTGTGCCTGGCCTTGTCAACTTGGGGAACACCTGCTTCATGAACTCTCTGC TGCAAGGCTTGTCAGCCTGCCCCACTTTCATCAAGTGGCTGGAAGAATTCACCACCCAGT ACACCAGGGATCAGAAGGAGCCCCCCCAGCACCAGTACTTATCCTTGACCCTGTTGCACC TCCTGAAAGCTTTATCCTGCCAGGAAGTCACTGACGAGGAGGTCTTGGATGCAAGCTGCT TGTTGGACGTCTTAAGAATGTACAGATGGCAGATCTCGTCGTTTGAAGAACAGGATGCTC ATGAGTTGTTCCACGTCATCACCTCGTCCCTGGAGGATGAGCGGGACCACCAGCCCCGGG TCACTCATTTGTTTGACGTGCACTCCCTGGAGCAACAGCCAGAAATTACTCCCAGACAGA TAACCTGCCGCACCAGAGGGTCACCTCATCCCATGTTCAATCACTGGAAGTCTCAGCATC CTTTTCATGGAAGACTTACGAGTAACATGGTCTGCAAACACTGTGAGCACCAGAGCCCTG TTCGATTTGATACCTTTGATAGCCTTTCACTAAGTATTCCAGCTGCCACATGGGGTCATC CACTGACCCTGGACCACTGCCTTCACCACTTCATCTCGTCGGAATCAGTGCGAGATGTCG TATGTGACAACTGTACGAAGATTGAAGCAAAAGGGACGCTGAATGGGGAGAAGGTGGAAC ATCAGAGGACCACGTTTGTCAAACAGCTGAAACTAGGGAAGCTCCCCCAGTGCCTGTGCA TCCACCTCCAGCGGCTGAGCTGGTCTAGCCACGGCACGCCCCTGAAGCGGCACGAGCATG TGCAGTTCAGTGAGTTCCTGATGATGGATATCTACAAATATCACCTCCTTGGACACAAGC CGGGGCCCCGGGGCCCCGAGCCCTGCAGGAAGGCAGGGCCCGCATTGGAAGTGCAGGACG GGCCGGCAGCCCCTAAGTCAGTTCGGAGCCAGCCGGGGGGCCCCAAAACACAGATGCTCA TGAATGGCGCCTGTTCCCCACCCTTCCTGCCCACCCTGCCAGCCCCGGTGCCCTTCCCAC TCCCAGCTGTTCCTGACCACAGCTCCTCCGCGTACCTCTTCCAGCTGATGGCTGTTGTTG TTCACCATGGAGACATGCATTCTGGACACTTTGTGACTTACCGACGGTCCCCTCCTTCAG CCAAGAACCCTCTCTCCACCAGCAACCAGTGGCTGTGGATTTCTGATGACACTGTCCGCA AGGCCAGCCTGCAGGAGGTCCTGTCCTCCAGTGCCTACCTGCTGTTTTACGAGCGCGTCC TTTCCAAGATGCAGCACCAGAATCGGGAGTACAAGTCTGAAGAATGACTCTGCCCTGGCC CCAAAGCAAGAGCTGATGGCACTGTCCAAACTCTGTGTGTGTGTATGTGTGTGTGTGTGT GTGTGTGTGTGCGCGCGCGCGCACAAGCAGCCCCACTAGAGTCCTACAGCCTTCTGGTGT GTTCTAAGCGCAGCGGTGCCGGGGTAGGAAAGCAGGCATTATGTCTAGAGCGTCTTGTGA CTCACCTGATACAGGTAATTAAAAGAAACCAGACTCCGAAAGCCACCTTTTCTATATTCT GATACGTTAGGTGTTCTCAGAGGGGAGTTAACTTTGTGTGATCCTCTGAGCTTTCAGCAT AGATCTTTTATTTTTAATAAGCAGGCCCATTAAAAAATGGTTGAATTAGTGAAGTTATTA AAGGCAACAGTT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 1-136, gnl|bosTau2|chr17 (35239663-35239798) | |
| 1-136, gnl|Hg17|chr12 (107953145-107953286) | |
| 1-136, gnl|Mm7|chr5 (113322217-113322366) | |
| 245-429, gnl|bosTau2|chr17 (35243165-35243349) | |
| 245-429, gnl|Hg17|chr12 (107958449-107958633) | |
| 245-429, gnl|Mm7|chr5 (113325493-113325677) | |
| 530-632, gnl|bosTau2|chr17 (35252040-35252142) | |
| 530-632, gnl|canFam2|chr26 (20958237-20958103) | |
| 530-632, gnl|danRer3|chr5 (10308986-10308881) | |
| 530-632, gnl|dasNov1|scaffold_220486 (3508-3628) | |
| 530-632, gnl|echTel1|scaffold_42092 (1259-1388) | |
| 530-632, gnl|fr1|chrUn (1852807-1852677) | |
| 530-632, gnl|galGal2|chr15 (6637602-6637737) | |
| 530-632, gnl|hg17|chr12 (107972109-107972240) | |
| 530-632, gnl|Hg17|chr12 (107972133-107972235) | |
| 530-632, gnl|loxAfr1|scaffold_1019 (47436-47567) | |
| 530-632, gnl|mm7|chr5 (113332944-113333071) | |
| 530-632, gnl|Mm7|chr5 (113332964-113333066) | |
| 530-632, gnl|monDom2|scaffold_324 (103994-103876) | |
| 530-632, gnl|oryCun1|scaffold_192072 (4310-4183) | |
| 530-632, gnl|panTro1|chr10 (110538123-110538254) | |
| 530-632, gnl|rheMac2|chr11 (110074327-110074458) | |
| 530-632, gnl|rn3|chr12 (43411521-43411395) | |
| 530-632, gnl|tetNig1|chr12 (6441067-6440947) | |
| 1000-1221, gnl|bosTau2|chr17 (35258423-35258644) | |
| 1000-1221, gnl|canFam2|chr26 (20948683-20948481) | |
| 1000-1221, gnl|danRer3|chr5 (10304199-10304053) | |
| 1000-1221, gnl|dasNov1|scaffold_13257 (57326-57124) | |
| 1000-1221, gnl|echTel1|scaffold_154853 (2412-2596) | |
| 1000-1221, gnl|fr1|chrUn (1851762-1851563) | |
| 1000-1221, gnl|galGal2|chr15 (6641940-6642152) | |
| 1000-1221, gnl|hg17|chr12 (107983343-107983544) | |
| 1000-1221, gnl|Hg17|chr12 (107983366-107983587) | |
| 1000-1221, gnl|mm7|chr5 (113342223-113342420) | |
| 1000-1221, gnl|Mm7|chr5 (113342242-113342463) | |
| 1000-1221, gnl|oryCun1|scaffold_117614 (5959-5758) | |
| 1000-1221, gnl|panTro1|chr10 (110549454-110549655) | |
| 1000-1221, gnl|rheMac2|chr11 (110085307-110085508) | |
| 1000-1221, gnl|rn3|chr12 (43403494-43403305) | |
| 1000-1221, gnl|tetNig1|chr12 (6439997-6439848) | |
| 1000-1221, gnl|xenTro1|scaffold_1137 (72297-72117) | |
| 1317-1753, gnl|bosTau2|chr17 (35261178-35261605) | |
| 1317-1753, gnl|Hg17|chr12 (107986165-107986586) | |
| 1317-1753, gnl|Mm7|chr5 (113343349-113343767) | |
| 1782-1992, gnl|bosTau2|chr17 (35261702-35261917) | |
| 1782-1992, gnl|Hg17|chr12 (107986689-107986896) | |
| 1782-1992, gnl|Mm7|chr5 (113343828-113344028) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-136, gnl|bosTau2|chr17 (35239663-35239798) | |
| 1-136, gnl|Hg17|chr12 (107953145-107953286) | |
| 1-136, gnl|Mm7|chr5 (113322217-113322366) | |
| 245-429, gnl|bosTau2|chr17 (35243165-35243349) | |
| 245-429, gnl|Hg17|chr12 (107958449-107958633) | |
| 245-429, gnl|Mm7|chr5 (113325493-113325677) | |
| 530-632, gnl|bosTau2|chr17 (35252040-35252142) | |
| 530-632, gnl|canFam2|chr26 (20958237-20958103) | |
| 530-632, gnl|danRer3|chr5 (10308986-10308881) | |
| 530-632, gnl|dasNov1|scaffold_220486 (3508-3628) | |
| 530-632, gnl|echTel1|scaffold_42092 (1259-1388) | |
| 530-632, gnl|fr1|chrUn (1852807-1852677) | |
| 530-632, gnl|galGal2|chr15 (6637602-6637737) | |
| 530-632, gnl|hg17|chr12 (107972109-107972240) | |
| 530-632, gnl|Hg17|chr12 (107972133-107972235) | |
| 530-632, gnl|loxAfr1|scaffold_1019 (47436-47567) | |
| 530-632, gnl|mm7|chr5 (113332944-113333071) | |
| 530-632, gnl|Mm7|chr5 (113332964-113333066) | |
| 530-632, gnl|monDom2|scaffold_324 (103994-103876) | |
| 530-632, gnl|oryCun1|scaffold_192072 (4310-4183) | |
| 530-632, gnl|panTro1|chr10 (110538123-110538254) | |
| 530-632, gnl|rheMac2|chr11 (110074327-110074458) | |
| 530-632, gnl|rn3|chr12 (43411521-43411395) | |
| 530-632, gnl|tetNig1|chr12 (6441067-6440947) | |
| 1000-1221, gnl|bosTau2|chr17 (35258423-35258644) | |
| 1000-1221, gnl|canFam2|chr26 (20948683-20948481) | |
| 1000-1221, gnl|danRer3|chr5 (10304199-10304053) | |
| 1000-1221, gnl|dasNov1|scaffold_13257 (57326-57124) | |
| 1000-1221, gnl|echTel1|scaffold_154853 (2412-2596) | |
| 1000-1221, gnl|fr1|chrUn (1851762-1851563) | |
| 1000-1221, gnl|galGal2|chr15 (6641940-6642152) | |
| 1000-1221, gnl|hg17|chr12 (107983343-107983544) | |
| 1000-1221, gnl|Hg17|chr12 (107983366-107983587) | |
| 1000-1221, gnl|mm7|chr5 (113342223-113342420) | |
| 1000-1221, gnl|Mm7|chr5 (113342242-113342463) | |
| 1000-1221, gnl|oryCun1|scaffold_117614 (5959-5758) | |
| 1000-1221, gnl|panTro1|chr10 (110549454-110549655) | |
| 1000-1221, gnl|rheMac2|chr11 (110085307-110085508) | |
| 1000-1221, gnl|rn3|chr12 (43403494-43403305) | |
| 1000-1221, gnl|tetNig1|chr12 (6439997-6439848) | |
| 1000-1221, gnl|xenTro1|scaffold_1137 (72297-72117) | |
| 1317-1753, gnl|bosTau2|chr17 (35261178-35261605) | |
| 1317-1753, gnl|Hg17|chr12 (107986165-107986586) | |
| 1317-1753, gnl|Mm7|chr5 (113343349-113343767) | |
| 1782-1992, gnl|bosTau2|chr17 (35261702-35261917) | |
| 1782-1992, gnl|Hg17|chr12 (107986689-107986896) | |
| 1782-1992, gnl|Mm7|chr5 (113343828-113344028) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| cag (0.151194) | |
| fat (0.147427) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| ese (0.126502) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| ldo (0.0970026) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cag (0.151194) | |
| fat (0.147427) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| ese (0.126502) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| ldo (0.0970026) |