Ss1.1-Ova1-OVR010046D04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTACAAAGGCAGCCGAGGCGACTCCGTAGATCAATGCGCCCTGGTCCAGAGCATCAAAG ACAAATGTCCTTGCTGCTACGGGCCCCTGGAGTGTCCGGTCTTCCCGACGGAGCTGGCCT TTGCCCTGGACACCTCCGAGGGGGTCACCCAGGACACCTTCAGCCTGATGCGGGACGTGG TCCTGAGGATTGTGGATGAGCTGACCATTGCCGAGAGCAACTGCCCACGGGGCGCCCGCG TGGCTGTGGTCACCTACAACAACGAGGTCATCACGGAGATCCGCTTCGCCGACTCCAGGA AGAAGTCCGTCCTCCTGGACAAGATCAAGAACCTCCAGGTGGTTCTGACGTCCAAGCAGC AGAGTCTGGAAACCGCCATGTCCTTCGTGGCCAGAAACACATTTAAGCGCGTGCGGAACG GGTTTCTGATGAGGAAGGTGGCCGTCTTCTTCAGCAACAAACCCACGAGGGCGTCCCCGC AGCTCCGGGAGGCCGTGCTCAAGCTCTCGGATGCCGGCATCACGCCCTTGTTCCTCACGA GCCAGGAGGACCGGGTGCTGATCAATGCCTTGCAGATCAATAACACAGCGGTGGGTCACG CCCTGGTCCTGCCTGCTAGGAGAGACCTCCCAGACTTCCTGAAGAACGTTCTGACTTGCC ACGTGTGCTTGGACATCTGCAACATCGACCCGTCCTGCAGCTTGGGCAGCTGGAGGCCTT CCTTCAGGGACCGGAGAGCCGCGGGCAGCGACGTGGACATCGACATGGCTTTCATCGTGG ACAGCTCCGAGACCACCACTCCGTTCCAGTTCAACGAGATGAGGAAGTACATCGGGTACG TGGTCCGACAGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTACAAAGGCAGCCGAGGCGACTCCGTAGATCAATGCGCCCTGGTCCAGAGCATCAAAG ACAAATGTCCTTGCTGCTACGGGCCCCTGGAGTGTCCGGTCTTCCCGACGGAGCTGGCCT TTGCCCTGGACACCTCCGAGGGGGTCACCCAGGACACCTTCAGCCTGATGCGGGACGTGG TCCTGAGGATTGTGGATGAGCTGACCATTGCCGAGAGCAACTGCCCACGGGGCGCCCGCG TGGCTGTGGTCACCTACAACAACGAGGTCATCACGGAGATCCGCTTCGCCGACTCCAGGA AGAAGTCCGTCCTCCTGGACAAGATCAAGAACCTCCAGGTGGTTCTGACGTCCAAGCAGC AGAGTCTGGAAACCGCCATGTCCTTCGTGGCCAGAAACACATTTAAGCGCGTGCGGAACG GGTTTCTGATGAGGAAGGTGGCCGTCTTCTTCAGCAACAAACCCACGAGGGCGTCCCCGC AGCTCCGGGAGGCCGTGCTCAAGCTCTCGGATGCCGGCATCACGCCCTTGTTCCTCACGA GCCAGGAGGACCGGGTGCTGATCAATGCCTTGCAGATCAATAACACAGCGGTGGGTCACG CCCTGGTCCTGCCTGCTAGGAGAGACCTCCCAGACTTCCTGAAGAACGTTCTGACTTGCC ACGTGTGCTTGGACATCTGCAACATCGACCCGTCCTGCAGCTTGGGCAGCTGGAGGCCTT CCTTCAGGGACCGGAGAGCCGCGGGCAGCGACGTGGACATCGACATGGCTTTCATCGTGG ACAGCTCCGAGACCACCACTCCGTTCCAGTTCAACGAGATGAGGAAGTACATCGGGTACG TGGTCCGACAGC |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 201-360, - strand, RNAz p=0.96767 | |
| 441-560, - strand, RNAz p=0.554194 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 201-360, - strand, RNAz p=0.96767 | |
| 441-560, - strand, RNAz p=0.554194 |
| Predicted microRNA(s): 1 entry(ies) | More info |
| Predicted microRNA(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 479-563, - strand, RNAmicro p=0.946592 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 81-578, gnl|bosTau2|chr3 (83860776-83860279) | |
| 81-578, gnl|canFam2|chr25 (51014863-51015351) | |
| 81-578, gnl|danRer3|chr16 (20283339-20282851) | |
| 81-578, gnl|dasNov1|scaffold_2040 (29092-29580) | |
| 81-578, gnl|echTel1|scaffold_325286 (4974-5462) | |
| 81-578, gnl|fr1|chrUn (228859679-228859191) | |
| 81-578, gnl|galGal2|chr7 (4769411-4768923) | |
| 81-578, gnl|hg17|chr2 (238034992-238035480) | |
| 81-578, gnl|Hg17|chr2 (238035487-238034990) | |
| 81-578, gnl|loxAfr1|scaffold_12620 (23324-22836) | |
| 81-578, gnl|mm7|chr1 (90685646-90686134) | |
| 81-578, gnl|Mm7|chr1 (90686141-90685644) | |
| 81-578, gnl|monDom2|scaffold_161 (176325-175837) | |
| 81-578, gnl|oryCun1|scaffold_123039 (11936-12424) | |
| 81-578, gnl|panTro1|chr13 (128975005-128975493) | |
| 81-578, gnl|rheMac2|chr12 (101200030-101200518) | |
| 81-578, gnl|rn3|chr9 (90185181-90185669) | |
| 81-578, gnl|tetNig1|chr2 (18606871-18606383) | |
| 81-578, gnl|xenTro1|scaffold_49 (2385708-2386196) | |
| 672-852, gnl|bosTau2|chr3 (83857412-83857232) | |
| 672-852, gnl|canFam2|chr25 (51011718-51012478) | |
| 672-852, gnl|danRer3|chr16 (20284698-20283977) | |
| 672-852, gnl|dasNov1|scaffold_2040 (25842-26601) | |
| 672-852, gnl|echTel1|scaffold_325286 (236-987) | |
| 672-852, gnl|fr1|chrUn (228860707-228859950) | |
| 672-852, gnl|galGal2|chr7 (4771512-4770773) | |
| 672-852, gnl|hg17|chr2 (238031075-238031834) | |
| 672-852, gnl|Hg17|chr2 (238031794-238031614) | |
| 672-852, gnl|loxAfr1|scaffold_12620 (27603-26845) | |
| 672-852, gnl|mm7|chr1 (90682748-90683507) | |
| 672-852, gnl|Mm7|chr1 (90683467-90683287) | |
| 672-852, gnl|monDom2|scaffold_161 (179670-178951) | |
| 672-852, gnl|oryCun1|scaffold_123039 (9259-10011) | |
| 672-852, gnl|panTro1|chr13 (128971145-128971904) | |
| 672-852, gnl|rheMac2|chr12 (101196262-101197021) | |
| 672-852, gnl|rn3|chr9 (90182396-90183152) | |
| 672-852, gnl|tetNig1|chr2 (18607883-18607168) | |
| 672-852, gnl|xenTro1|scaffold_49 (2383107-2383828) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 81-578, gnl|bosTau2|chr3 (83860776-83860279) | |
| 81-578, gnl|canFam2|chr25 (51014863-51015351) | |
| 81-578, gnl|danRer3|chr16 (20283339-20282851) | |
| 81-578, gnl|dasNov1|scaffold_2040 (29092-29580) | |
| 81-578, gnl|echTel1|scaffold_325286 (4974-5462) | |
| 81-578, gnl|fr1|chrUn (228859679-228859191) | |
| 81-578, gnl|galGal2|chr7 (4769411-4768923) | |
| 81-578, gnl|hg17|chr2 (238034992-238035480) | |
| 81-578, gnl|Hg17|chr2 (238035487-238034990) | |
| 81-578, gnl|loxAfr1|scaffold_12620 (23324-22836) | |
| 81-578, gnl|mm7|chr1 (90685646-90686134) | |
| 81-578, gnl|Mm7|chr1 (90686141-90685644) | |
| 81-578, gnl|monDom2|scaffold_161 (176325-175837) | |
| 81-578, gnl|oryCun1|scaffold_123039 (11936-12424) | |
| 81-578, gnl|panTro1|chr13 (128975005-128975493) | |
| 81-578, gnl|rheMac2|chr12 (101200030-101200518) | |
| 81-578, gnl|rn3|chr9 (90185181-90185669) | |
| 81-578, gnl|tetNig1|chr2 (18606871-18606383) | |
| 81-578, gnl|xenTro1|scaffold_49 (2385708-2386196) | |
| 672-852, gnl|bosTau2|chr3 (83857412-83857232) | |
| 672-852, gnl|canFam2|chr25 (51011718-51012478) | |
| 672-852, gnl|danRer3|chr16 (20284698-20283977) | |
| 672-852, gnl|dasNov1|scaffold_2040 (25842-26601) | |
| 672-852, gnl|echTel1|scaffold_325286 (236-987) | |
| 672-852, gnl|fr1|chrUn (228860707-228859950) | |
| 672-852, gnl|galGal2|chr7 (4771512-4770773) | |
| 672-852, gnl|hg17|chr2 (238031075-238031834) | |
| 672-852, gnl|Hg17|chr2 (238031794-238031614) | |
| 672-852, gnl|loxAfr1|scaffold_12620 (27603-26845) | |
| 672-852, gnl|mm7|chr1 (90682748-90683507) | |
| 672-852, gnl|Mm7|chr1 (90683467-90683287) | |
| 672-852, gnl|monDom2|scaffold_161 (179670-178951) | |
| 672-852, gnl|oryCun1|scaffold_123039 (9259-10011) | |
| 672-852, gnl|panTro1|chr13 (128971145-128971904) | |
| 672-852, gnl|rheMac2|chr12 (101196262-101197021) | |
| 672-852, gnl|rn3|chr9 (90182396-90183152) | |
| 672-852, gnl|tetNig1|chr2 (18607883-18607168) | |
| 672-852, gnl|xenTro1|scaffold_49 (2383107-2383828) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.36785) | |
| jca (0.22792) |