Non-Coding RNA Search

Ss1.1-Ova1-OVR010047A02.5

Sequence:


               
               GCGCTGGTGCAGCTCGGCCAGCCATGTGACTGCCTCCCTCCCCTGCGGGCAGCAGCAGAG
CAGCTCCGACAGAAGGATCTGAGGATTTCCCAGCTGCAAGCCGATCTCCGTCGCCCACCC
CCTGCCCCTGCCCAGCCCCCTGAACCTGAGGCTCTGCCTACTATCTATGTTGTTACCCCC
ACCTATGCCAGGCTGGTGCAGAAGGCAGAGCTGGTGCGGCTGTCCCAGACCCTGAGCCTG
GTGCCCCGGCTGCACTGGCTGCTGGTGGAGGACGCTGAGGGCCCCACCCCATTGGTCTCA
GGGCTGCTGGCTGCCTCTGGCCTCCTCTTCACACATCTGGCGGTCCTCACCCCCAAGGCC
CAGCGGCTCCGGGAGGGCGAGCCAGGCTGGGTTCGCCCCCGAGGTGTAGAGCAACGGAAC
AGAGCCCTGGACTGGCTCCGCAGTGGAGGGGGCGCTGTGGGGGGAGAGAAAGACCCACCC
CCACCAGGGACCCGGGGAGTCGTGTATTTTGCTGACGATGACAACACCTACAGCCGGGAG
CTCTTTGAGGAGATGCGCTGGACCCGTGGAGTCTCGGTGTGGCCCGTCGGGCTGGTGGGC
GGCCTGCGATTCGAGGGCCCTCGGGTGCAGGATGGCCGGGTTGTGGGCTTCCACACGGCG
TGGGAGCCCAACAGGCCCTTCCCGGTGGATATGGCGGGATTTGCTGTCGCTCTGCCCTTG
CTGTTGGCTAAGCCCAGTGCCCGCTTTGATGCTGCTGCTCCTCGGGGCCACCTGGAGAGC
AGCCTCCTCAGCCACCTCGTAGATCCCAAGGACCTGGAGCCCCGCGCTGCCAACTGCACT
CGGGTTCTGGTGTGGCACACAAGGACAGAGAAGCCCAAGATGAAGCAGGAGGAGCAGCTA
CAGCGGCAGGGCCGAGGCTCAGACCCAGCTGTTGAGGTGTAACGGTGGTCCTGCCCTGCC
CACCACCTCATCAGGCACAGACCCTTGGGACTGGGTCCCCAGCCTGGCTAGGATGTGATT
TTTTCCAAGTCCTGACCCCTCAGAGCCAGGAACAGGCCCTCTGTCCCTTTAGCCCCAGGG
CGGGGCCCGGCTGCTTCTCCCCTCCCCCAGCCTGCCATGTGGCACTACCCACAGGCTAGG
GACAAGCGGCCCTTGTGTTGAGCCAGACGGGCCCTCTCTGGGGCGGAGCAGATGGACAGA
CAGACTCAGGAGGGAGGGCTGCTGAGTAACTGGGTAACTTATTGGGGCTGGGCATGCACT
GGGGGGCTGGAGGAGCTGGGCTGGACCCTCCCTGCCTGAGCATGCTGACCCCCCTCCTAC
CTCCAGAATAAAAACTCTCAACCTAAAAAAAAAAAAAAAAAAAAAAAAGAGAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGCTGGTGCAGCTCGGCCAGCCATGTGACTGCCTCCCTCCCCTGCGGGCAGCAGCAGAG
CAGCTCCGACAGAAGGATCTGAGGATTTCCCAGCTGCAAGCCGATCTCCGTCGCCCACCC
CCTGCCCCTGCCCAGCCCCCTGAACCTGAGGCTCTGCCTACTATCTATGTTGTTACCCCC
ACCTATGCCAGGCTGGTGCAGAAGGCAGAGCTGGTGCGGCTGTCCCAGACCCTGAGCCTG
GTGCCCCGGCTGCACTGGCTGCTGGTGGAGGACGCTGAGGGCCCCACCCCATTGGTCTCA
GGGCTGCTGGCTGCCTCTGGCCTCCTCTTCACACATCTGGCGGTCCTCACCCCCAAGGCC
CAGCGGCTCCGGGAGGGCGAGCCAGGCTGGGTTCGCCCCCGAGGTGTAGAGCAACGGAAC
AGAGCCCTGGACTGGCTCCGCAGTGGAGGGGGCGCTGTGGGGGGAGAGAAAGACCCACCC
CCACCAGGGACCCGGGGAGTCGTGTATTTTGCTGACGATGACAACACCTACAGCCGGGAG
CTCTTTGAGGAGATGCGCTGGACCCGTGGAGTCTCGGTGTGGCCCGTCGGGCTGGTGGGC
GGCCTGCGATTCGAGGGCCCTCGGGTGCAGGATGGCCGGGTTGTGGGCTTCCACACGGCG
TGGGAGCCCAACAGGCCCTTCCCGGTGGATATGGCGGGATTTGCTGTCGCTCTGCCCTTG
CTGTTGGCTAAGCCCAGTGCCCGCTTTGATGCTGCTGCTCCTCGGGGCCACCTGGAGAGC
AGCCTCCTCAGCCACCTCGTAGATCCCAAGGACCTGGAGCCCCGCGCTGCCAACTGCACT
CGGGTTCTGGTGTGGCACACAAGGACAGAGAAGCCCAAGATGAAGCAGGAGGAGCAGCTA
CAGCGGCAGGGCCGAGGCTCAGACCCAGCTGTTGAGGTGTAACGGTGGTCCTGCCCTGCC
CACCACCTCATCAGGCACAGACCCTTGGGACTGGGTCCCCAGCCTGGCTAGGATGTGATT
TTTTCCAAGTCCTGACCCCTCAGAGCCAGGAACAGGCCCTCTGTCCCTTTAGCCCCAGGG
CGGGGCCCGGCTGCTTCTCCCCTCCCCCAGCCTGCCATGTGGCACTACCCACAGGCTAGG
GACAAGCGGCCCTTGTGTTGAGCCAGACGGGCCCTCTCTGGGGCGGAGCAGATGGACAGA
CAGACTCAGGAGGGAGGGCTGCTGAGTAACTGGGTAACTTATTGGGGCTGGGCATGCACT
GGGGGGCTGGAGGAGCTGGGCTGGACCCTCCCTGCCTGAGCATGCTGACCCCCCTCCTAC
CTCCAGAATAAAAACTCTCAACCTAAAAAAAAAAAAAAAAAAAAAAAAGAGAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q7YRG4_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q7YRG4_PIG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               385-1306, - strand, RNAz p=0.964608

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               385-1306, - strand, RNAz p=0.964608

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               146-557, gnl|bosTau2|chr15 (53602230-53601813)
               

               
               146-557, gnl|Hg17|chr11 (133759166-133758779)
               

               
               146-557, gnl|Mm7|chr9 (26638695-26639081)
               


               
               1061-1337, gnl|bosTau2|chr29 (32064148-32063866)
               

               
               1061-1337, gnl|Hg17|chr11 (62139658-62139352)
               

               
               1061-1337, gnl|Mm7|chr19 (8607092-8607390)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               146-557, gnl|bosTau2|chr15 (53602230-53601813)
               

               
               146-557, gnl|Hg17|chr11 (133759166-133758779)
               

               
               146-557, gnl|Mm7|chr9 (26638695-26639081)
               


               
               1061-1337, gnl|bosTau2|chr29 (32064148-32063866)
               

               
               1061-1337, gnl|Hg17|chr11 (62139658-62139352)
               

               
               1061-1337, gnl|Mm7|chr19 (8607092-8607390)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               sme (0.305437)
               

               
               pla (0.267344)
               

               
               eru (0.240096)
               

               
               jca (0.22792)
               

               
               nlu (0.191681)
               

               
               fbs (0.175346)
               

               
               cag (0.151194)
               

               
               pgl (0.118483)
               

               
               jej (0.0989218)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)
               

               
               pla (0.267344)
               

               
               eru (0.240096)
               

               
               jca (0.22792)
               

               
               nlu (0.191681)
               

               
               fbs (0.175346)
               

               
               cag (0.151194)
               

               
               pgl (0.118483)
               

               
               jej (0.0989218)

	146-557, gnl\|bosTau2\|chr15 (53602230-53601813)
	146-557, gnl\|Hg17\|chr11 (133759166-133758779)
	146-557, gnl\|Mm7\|chr9 (26638695-26639081)

	1061-1337, gnl\|bosTau2\|chr29 (32064148-32063866)
	1061-1337, gnl\|Hg17\|chr11 (62139658-62139352)
	1061-1337, gnl\|Mm7\|chr19 (8607092-8607390)

	sme (0.305437)
	pla (0.267344)
	eru (0.240096)
	jca (0.22792)
	nlu (0.191681)
	fbs (0.175346)
	cag (0.151194)
	pgl (0.118483)
	jej (0.0989218)