Non-Coding RNA Search

Ss1.1-Ova1-OVR010047C12.5

Sequence:


               
               ATTTTCGAGTGAAGGACCCGGAGCCGAAACACCAGTAGACGCGGGGGGGTTATACAACCG
TTTCCAGCCTTGGTCTGAGTGGACTGTCCCGCAGCGACCATGCCCCGTAAGGGCACCCAG
CCCTCCACTGCCCGGCGCAGAGAGGAAGGGCCGCCGCAGTCCCCGGACCGCACCAGCAGC
GATGCGCAGCCGGAGTCGCCGCCCGGCTGCTCGGAGAGCCGGGCGCCTGCCACCGCAGAG
ACTCCAAGTGAGGAAATTGATAATAGAAGTTTAGAAGAGATTTTGAGTAGCATCCCTCCG
CCGCCGCCTCCAGCAATGACCAATGAAGCTGGAGCTCCTCGGCTTATGATAACTCATATT
GTAAACCAGAACTTCAAATCCTATGCTGGGGAAAAAATTCTAGGACCTTTTCATAAGCGC
TTTTCCTGTATTATTGGTCCAAATGGCAGTGGCAAATCCAATGTTATTGATTCAATGCTT
TTTGTGTTTGGCTATAGAGCACAAAAAATCAGATCTAAAAAACTCTCAGTACTAATACAC
AATTCTGATGAACACAAGGATATTCAGAGTTGTACTGTAGAAGTTCATTTTCAAAAGATA
ATTGATAAGGAAGGGAATGATTATGAAGTTGTTCCTAACAGTAACTTCTATGTATCCAGA
ACAGCCTATAGAGATAATACTTCTGTTTATCACATAAGTGGGAAGAAGAAGACATTTAAG
GATGTTGGAAATCTTCTTCGAAGCCATGGAATTGACTTGGACCATAATAGATTTTTAATC
TTGCAGGGTGAAGTTGAGCAGATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTCGAGTGAAGGACCCGGAGCCGAAACACCAGTAGACGCGGGGGGGTTATACAACCG
TTTCCAGCCTTGGTCTGAGTGGACTGTCCCGCAGCGACCATGCCCCGTAAGGGCACCCAG
CCCTCCACTGCCCGGCGCAGAGAGGAAGGGCCGCCGCAGTCCCCGGACCGCACCAGCAGC
GATGCGCAGCCGGAGTCGCCGCCCGGCTGCTCGGAGAGCCGGGCGCCTGCCACCGCAGAG
ACTCCAAGTGAGGAAATTGATAATAGAAGTTTAGAAGAGATTTTGAGTAGCATCCCTCCG
CCGCCGCCTCCAGCAATGACCAATGAAGCTGGAGCTCCTCGGCTTATGATAACTCATATT
GTAAACCAGAACTTCAAATCCTATGCTGGGGAAAAAATTCTAGGACCTTTTCATAAGCGC
TTTTCCTGTATTATTGGTCCAAATGGCAGTGGCAAATCCAATGTTATTGATTCAATGCTT
TTTGTGTTTGGCTATAGAGCACAAAAAATCAGATCTAAAAAACTCTCAGTACTAATACAC
AATTCTGATGAACACAAGGATATTCAGAGTTGTACTGTAGAAGTTCATTTTCAAAAGATA
ATTGATAAGGAAGGGAATGATTATGAAGTTGTTCCTAACAGTAACTTCTATGTATCCAGA
ACAGCCTATAGAGATAATACTTCTGTTTATCACATAAGTGGGAAGAAGAAGACATTTAAG
GATGTTGGAAATCTTCTTCGAAGCCATGGAATTGACTTGGACCATAATAGATTTTTAATC
TTGCAGGGTGAAGTTGAGCAGATT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55621402|ref|XP_516850.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55621402|ref|XP_516850.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               407-524, + strand, RNAz p=0.69646

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               407-524, + strand, RNAz p=0.69646

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               92-238, gnl|bosTau2|chr1 (70879696-70879842)
               

               
               92-238, gnl|canFam2|chr34 (29466130-29466635)
               

               
               92-238, gnl|dasNov1|scaffold_3568 (72443-71918)
               

               
               92-238, gnl|hg17|chr3 (161601252-161601772)
               

               
               92-238, gnl|Hg17|chr3 (161601309-161601455)
               

               
               92-238, gnl|mm7|chr3 (69107024-69107470)
               

               
               92-238, gnl|Mm7|chr3 (69107079-69107219)
               

               
               92-238, gnl|oryCun1|scaffold_197721 (10345-9830)
               

               
               92-238, gnl|panTro1|chr2 (164779950-164780471)
               

               
               92-238, gnl|rheMac2|chr2 (127285178-127284689)
               

               
               92-238, gnl|rn3|chr2 (158938456-158938892)
               


               
               407-616, gnl|bosTau2|chr1 (70881292-70881503)
               

               
               407-616, gnl|Hg17|chr3 (161603154-161603365)
               

               
               407-616, gnl|Mm7|chr3 (69108923-69109132)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               92-238, gnl|bosTau2|chr1 (70879696-70879842)
               

               
               92-238, gnl|canFam2|chr34 (29466130-29466635)
               

               
               92-238, gnl|dasNov1|scaffold_3568 (72443-71918)
               

               
               92-238, gnl|hg17|chr3 (161601252-161601772)
               

               
               92-238, gnl|Hg17|chr3 (161601309-161601455)
               

               
               92-238, gnl|mm7|chr3 (69107024-69107470)
               

               
               92-238, gnl|Mm7|chr3 (69107079-69107219)
               

               
               92-238, gnl|oryCun1|scaffold_197721 (10345-9830)
               

               
               92-238, gnl|panTro1|chr2 (164779950-164780471)
               

               
               92-238, gnl|rheMac2|chr2 (127285178-127284689)
               

               
               92-238, gnl|rn3|chr2 (158938456-158938892)
               


               
               407-616, gnl|bosTau2|chr1 (70881292-70881503)
               

               
               407-616, gnl|Hg17|chr3 (161603154-161603365)
               

               
               407-616, gnl|Mm7|chr3 (69108923-69109132)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               mcp (0.170648)
               

               
               lin (0.145603)
               

               
               pla (0.133672)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)
               

               
               lin (0.145603)
               

               
               pla (0.133672)

	92-238, gnl\|bosTau2\|chr1 (70879696-70879842)
	92-238, gnl\|canFam2\|chr34 (29466130-29466635)
	92-238, gnl\|dasNov1\|scaffold_3568 (72443-71918)
	92-238, gnl\|hg17\|chr3 (161601252-161601772)
	92-238, gnl\|Hg17\|chr3 (161601309-161601455)
	92-238, gnl\|mm7\|chr3 (69107024-69107470)
	92-238, gnl\|Mm7\|chr3 (69107079-69107219)
	92-238, gnl\|oryCun1\|scaffold_197721 (10345-9830)
	92-238, gnl\|panTro1\|chr2 (164779950-164780471)
	92-238, gnl\|rheMac2\|chr2 (127285178-127284689)
	92-238, gnl\|rn3\|chr2 (158938456-158938892)

	407-616, gnl\|bosTau2\|chr1 (70881292-70881503)
	407-616, gnl\|Hg17\|chr3 (161603154-161603365)
	407-616, gnl\|Mm7\|chr3 (69108923-69109132)