Non-Coding RNA Search

Ss1.1-Ova1-OVR010047D10.5

Sequence:


               
               AACCAGGCCGAGATGAAGCAGCGCGAAAACTGTAAGATCCGCATCCAGCGCCAGCTGGAG
ATCATGGGCAAGGATGTCTCGAGCAACCAGATAGAGGACATGTTCGAACAAGGCAAATGG
GACGTGTTCTCCGAGAACCTGCTGGCTGATGTGAAGGGCGCGCGGGCGGCCCTCAATGAG
ATCGAGAACCGCCACCGCGAGATGCTGCGGCTGGAGAGCCGCATCCGCGACCTGCATGAC
CTCTTCCTGCAGATGGCCATGCTGGTGGAGCAGCAGGCTGACACCTTGGACGTCATCGAG
TTCAACGTGCAGAAGACCCTTGACTACACCGGCCAGGCCAAGGTGCAGGTGCGCAAGGCG
GTGCAGTACAAAAAGAAGAATCCCTGCCGGACCATCTGCTGCTTCTGCTGCCCCTGCCTG
AACTAGCAGGCCTGCAACACCCGATCCCAGACCTGAAAGGGCTAGTAAGCACCCTGGGAA
AGATGTTGAGGCCATTTGCACTGGGATGAGTTGCTCTAATGCCTATGGACCTCGCTCTTT
AGAGAAAGAAAACACTCAAGGTCCAAGAATTCCAGCCCAGCTCGAACTTGGAAAGAGGGT
ACATGTCACCCCATTGTTTCTTCAGTAAGGACAGATACCTCCTGAAATTTTGTGAGATCA
TTATATGGCACATAAACACCCTCGCCTCTTAACGGAAGCCAAATGAGGAACTGACATTGT
AGTGTACTCTACGGTAAATGTCCAAGGCACGTTTGCTCATGAACCTCTAGGAGGAAGTCA
AATTGTGCATCAGCCCATTGTGTAAGGACTGGTTATTAAAACTTCAATTCATTTACCCTG
TCCTGAAAGTACCTTGGTTCTATTCATTTTCGAGTGAAATTGACCTTGGGAAAAACTGCA
CATCTTCCTTTTCTTACTCTTTATCTGGTTTATGCTATGTGATTCCCACATGGATGTGTA
TCTTCTTTCTGCTCACCTCCTCTACTTGTTTAAATCACAAGTATCACTGTTTCCTCAACT
CTTTATATTCTATCAGAATATATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACCAGGCCGAGATGAAGCAGCGCGAAAACTGTAAGATCCGCATCCAGCGCCAGCTGGAG
ATCATGGGCAAGGATGTCTCGAGCAACCAGATAGAGGACATGTTCGAACAAGGCAAATGG
GACGTGTTCTCCGAGAACCTGCTGGCTGATGTGAAGGGCGCGCGGGCGGCCCTCAATGAG
ATCGAGAACCGCCACCGCGAGATGCTGCGGCTGGAGAGCCGCATCCGCGACCTGCATGAC
CTCTTCCTGCAGATGGCCATGCTGGTGGAGCAGCAGGCTGACACCTTGGACGTCATCGAG
TTCAACGTGCAGAAGACCCTTGACTACACCGGCCAGGCCAAGGTGCAGGTGCGCAAGGCG
GTGCAGTACAAAAAGAAGAATCCCTGCCGGACCATCTGCTGCTTCTGCTGCCCCTGCCTG
AACTAGCAGGCCTGCAACACCCGATCCCAGACCTGAAAGGGCTAGTAAGCACCCTGGGAA
AGATGTTGAGGCCATTTGCACTGGGATGAGTTGCTCTAATGCCTATGGACCTCGCTCTTT
AGAGAAAGAAAACACTCAAGGTCCAAGAATTCCAGCCCAGCTCGAACTTGGAAAGAGGGT
ACATGTCACCCCATTGTTTCTTCAGTAAGGACAGATACCTCCTGAAATTTTGTGAGATCA
TTATATGGCACATAAACACCCTCGCCTCTTAACGGAAGCCAAATGAGGAACTGACATTGT
AGTGTACTCTACGGTAAATGTCCAAGGCACGTTTGCTCATGAACCTCTAGGAGGAAGTCA
AATTGTGCATCAGCCCATTGTGTAAGGACTGGTTATTAAAACTTCAATTCATTTACCCTG
TCCTGAAAGTACCTTGGTTCTATTCATTTTCGAGTGAAATTGACCTTGGGAAAAACTGCA
CATCTTCCTTTTCTTACTCTTTATCTGGTTTATGCTATGTGATTCCCACATGGATGTGTA
TCTTCTTTCTGCTCACCTCCTCTACTTGTTTAAATCACAAGTATCACTGTTTCCTCAACT
CTTTATATTCTATCAGAATATATT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               7-1030, gnl|bosTau2|chr9 (47573458-47572421)
               

               
               7-1030, gnl|Hg17|chr6 (144549902-144550931)
               

               
               7-1030, gnl|Mm7|chr10 (12641889-12640871)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-1030, gnl|bosTau2|chr9 (47573458-47572421)
               

               
               7-1030, gnl|Hg17|chr6 (144549902-144550931)
               

               
               7-1030, gnl|Mm7|chr10 (12641889-12640871)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

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               isp (0.300752)
               

               
               cbl (0.229595)
               

               
               lun (0.150489)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               med (0.116252)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (0.300752)
               

               
               cbl (0.229595)
               

               
               lun (0.150489)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               med (0.116252)

	7-1030, gnl\|bosTau2\|chr9 (47573458-47572421)
	7-1030, gnl\|Hg17\|chr6 (144549902-144550931)
	7-1030, gnl\|Mm7\|chr10 (12641889-12640871)

	isp (0.300752)
	cbl (0.229595)
	lun (0.150489)
	liv (0.146284)
	csk (0.140746)
	med (0.116252)